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ORCIDBioData Mining, Volume 5
Volume 5, 2012
- Theodoros G. Soldatos
, Seán I. O'Donoghue, Venkata P. Satagopam, Adriano Barbosa-Silva, Georgios A. Pavlopoulos, Ana Carolina Wanderley-Nogueira, Nina da Mota Soares-Cavalcanti, Reinhard Schneider:
Caipirini: using gene sets to rank literature. 1 - Johannes Tuikkala, Heidi Vähämaa, Pekka Salmela, Olli Nevalainen, Tero Aittokallio:
A multilevel layout algorithm for visualizing physical and genetic interaction networks, with emphasis on their modular organization. 2 - Hongying Dai, Madhusudan Bhandary, Mara Becker, J. Steven Leeder, Roger Gaedigk, Alison A. Motsinger-Reif:
Global tests of P-values for multifactor dimensionality reduction models in selection of optimal number of target genes. 3 - Jiang Gui, Tor D. Tosteson, Mark E. Borsuk:
Weighted multiple testing procedures for genomic studies. 4 - Sarah A. Pendergrass, Scott M. Dudek, Dana C. Crawford, Marylyn D. Ritchie:
Visually integrating and exploring high throughput Phenome-Wide Association Study (PheWAS) results using PheWAS-View. 5 - Xiaoqing Yu, Kishore Guda, Joseph Willis, Martina Veigl, Zhenghe Wang, Sanford Markowitz, Mark D. Adams, Shuying Sun:
How do alignment programs perform on sequencing data with varying qualities and from repetitive regions? 6 - Lorenz Bülow, Julio C. Bolívar, Jonas Ruhe, Yuri Brill, Reinhard Hehl:
'MicroRNA Targets', a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana. 7 - Li Li, Yang Guo, Wenwu Wu, Youyi Shi, Jian Cheng, Shiheng Tao:
A comparison and evaluation of five biclustering algorithms by quantifying goodness of biclusters for gene expression data. 8 - Nora Kim, Peter C. Andrews, Folkert W. Asselbergs, H. Robert Frost, Scott M. Williams, Brent T. Harris, Cynthia Read, Kathleen D. Askland, Jason H. Moore:
Gene ontology analysis of pairwise genetic associations in two genome-wide studies of sporadic ALS. 9 - Raul Cruz-Cano, Mei-Ling Ting Lee, Ming-Ying Leung:
Logic minimization and rule extraction for identification of functional sites in molecular sequences. 10 - Sameh Magdeldin, Yutaka Yoshida, Huiping Li, Yoshitaka Maeda, Munesuke Yokoyama, Shymaa Enany, Ying Zhang, Bo Xu, Hidehiko Fujinaka, Eishin Yaoita, Sei Sasaki, Tadashi Yamamoto:
Murine colon proteome and characterization of the protein pathways. 11 - Nicolas Turenne, Evgeny S. Tiys, Vladimir A. Ivanisenko, Nikolay Yudin, Elena Ignatieva, Damien Valour, Séverine A. Degrelle, Isabelle Hue:
Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development. 12 - Vida Abedi, Ramin Zand, Mohammed Yeasin, Fazle Faisal:
An automated framework for hypotheses generation using literature. 13 - Miguel A. Andrade-Navarro, Gareth A. Palidwor, Carolina Perez-Iratxeta:
Peer2ref: a peer-reviewer finding web tool that uses author disambiguation. 14 - Ryan J. Urbanowicz, Jeff Kiralis, Jonathan M. Fisher, Jason H. Moore:
Predicting the difficulty of pure, strict, epistatic models: metrics for simulated model selection. 15 - Ryan J. Urbanowicz, Jeff Kiralis, Nicholas A. Sinnott-Armstrong, Tamra Heberling, Jonathan M. Fisher, Jason H. Moore:
GAMETES: a fast, direct algorithm for generating pure, strict, epistatic models with random architectures. 16 - Jun-ichi Satoh:
Molecular network analysis of human microRNA targetome: from cancers to Alzheimer's disease. 17 - Henry Wirth, Martin von Bergen, Hans Binder:
Mining SOM expression portraits: feature selection and integrating concepts of molecular function. 18 - Ignacio González, Kim-Anh Lê Cao, Melissa J. Davis, Sébastien Déjean:
Visualising associations between paired 'omics' data sets. 19 - Matthew E. Stokes, Shyam Visweswaran:
Application of a spatially-weighted Relief algorithm for ranking genetic predictors of disease. 20 - Chad C. Brown, Tammy M. Havener, Marisa Wong Medina, Ronald M. Krauss, Howard L. McLeod, Alison A. Motsinger-Reif:
Multivariate methods and software for association mapping in dose-response genome-wide association studies. 21
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