


default search action
Journal of Cheminformatics, Volume 5
Volume 5, 2013
- Sunghwan Kim
, Evan Bolton
, Stephen H. Bryant:
PubChem3D: conformer ensemble accuracy. 1 - Abhik Seal, Perumal Yogeeswari, Dharmaranjan Sriram, David J. Wild:
Enhanced ranking of PknB Inhibitors using data fusion methods. 2 - Jon Chambers, Mark Davies
, Anna Gaulton
, Anne Hersey
, Sameer Velankar
, Robert Petryszak
, Janna Hastings
, Louisa J. Bellis
, Shaun McGlinchey, John P. Overington
:
UniChem: a unified chemical structure cross-referencing and identifier tracking system. 3 - Ioana Oprisiu, Sergii Novotarskyi, Igor V. Tetko
:
Modeling of non-additive mixture properties using the Online CHEmical database and Modeling environment (OCHEM). 4 - Sheng Tian
, Youyong Li
, Junmei Wang
, Xiaojie Xu, Lei Xu, Xiaohong Wang, Lei Chen, Tingjun Hou:
Drug-likeness analysis of traditional Chinese medicines: 2. Characterization of scaffold architectures for drug-like compounds, non-drug-like compounds, and natural compounds from traditional Chinese medicines. 5 - Henry S. Rzepa
:
Chemical datuments as scientific enablers. 6 - Stephen R. Heller, Alan McNaught, Stephen Stein, Dmitrii Tchekhovskoi, Igor V. Pletnev
:
InChI - the worldwide chemical structure identifier standard. 7 - Hwanho Choi, Hongsuk Kang, Hwangseo Park:
New solvation free energy function comprising intermolecular solvation and intramolecular self-solvation terms. 8 - Ana L. Teixeira, João Paulo Leal
, André O. Falcão:
Random forests for feature selection in QSPR Models - an application for predicting standard enthalpy of formation of hydrocarbons. 9 - Christopher Southan
:
InChI in the wild: An Assessment of InChIKey searching in Google. 10 - Sunil Sagar, Mandeep Kaur
, Aleksandar Radovanovic
, Vladimir B. Bajic
:
Dragon exploration system on marine sponge compounds interactions. 11 - Kerstin Scheubert, Franziska Hufsky
, Sebastian Böcker
:
Computational mass spectrometry for small molecules. 12 - Sean Ekins, Alex M. Clark
, Malabika Sarker:
TB mobile: a mobile app for anti-tuberculosis molecules with known targets. 13 - Ola Spjuth
, Arvid Berg, Samuel E. Adams
, Egon L. Willighagen
:
Applications of the InChI in cheminformatics with the CDK and Bioclipse. 14 - Naoto Takada, Norihito Ohmori, Takashi Okada:
Mining basic active structures from a large-scale database. 15 - Anna Palczewska, Daniel Neagu
, Mick J. Ridley:
Using Pareto points for model identification in predictive toxicology. 16 - Sabina Smusz
, Rafal Kurczab
, Andrzej J. Bojarski
:
The influence of the inactives subset generation on the performance of machine learning methods. 17 - Radka Svobodová Vareková
, Stanislav Geidl, Crina-Maria Ionescu, Ondrej Skrehota, Tomás Bouchal, David Sehnal
, Ruben Abagyan, Jaroslav Koca
:
Predicting pKa values from EEM atomic charges. 18 - Melvin J. Yu:
Druggable chemical space and enumerative combinatorics. 19 - Christopher Southan
, Andras Stracz:
Extracting and connecting chemical structures from text sources using chemicalize.org. 20 - Ying-Ting Lin:
A tandem regression-outlier analysis of a ligand cellular system for key structural modifications around ligand binding. 21 - Effirul Ikhwan Ramlan
, Klaus-Peter Zauner:
In-silico design of computational nucleic acids for molecular information processing. 22 - Egon L. Willighagen
, Andra Waagmeester
, Ola Spjuth
, Peter Ansell, Antony J. Williams
, Valery Tkachenko, Janna Hastings
, Bin Chen, David J. Wild:
The ChEMBL database as linked open data. 23 - Bruno Bienfait, Peter Ertl
:
JSME: a free molecule editor in JavaScript. 24:1-24:6 - Wibe A. de Jong
, Andrew M. Walker
, Marcus D. Hanwell
:
From data to analysis: linking NWChem and Avogadro with the syntax and semantics of Chemical Markup Language. 25 - Sereina Riniker
, Gregory A. Landrum
:
Open-source platform to benchmark fingerprints for ligand-based virtual screening. 26 - Faizan Sahigara, Davide Ballabio
, Roberto Todeschini
, Viviana Consonni
:
Defining a novel k-nearest neighbours approach to assess the applicability domain of a QSAR model for reliable predictions. 27 - Hong Kang, Kailin Tang
, Qi Liu, Yi Sun, Qi Huang, Ruixin Zhu
, Jun Gao, Duanfeng Zhang, Chenggang Huang, Zhiwei Cao:
HIM-herbal ingredients in-vivo metabolism database. 28 - Christoph Steinbeck:
Review of "Contemporary computer-assisted approaches to molecular structure elucidation (new developments in NMR)" by Mikhail E Elyashberg, Antony Williams and Kirill Blinov. 29 - Francesco Napolitano
, Yan Zhao, Vania M. Moreira, Roberto Tagliaferri
, Juha Kere
, Mauro D'Amato
, Dario Greco
:
Drug Repositioning: A Machine-Learning Approach through Data Integration. 30 - Lazaros Mavridis
, John B. O. Mitchell
:
Predicting the protein targets for athletic performance-enhancing substances. 31 - David J. Wild:
Cheminformatics for the masses: a chance to increase educational opportunities for the next generation of cheminformaticians. 32 - Lars Rosenbaum, Alexander Dörr, Matthias R. Bauer
, Frank M. Boeckler
, Andreas Zell:
Inferring multi-target QSAR models with taxonomy-based multi-task learning. 33 - Xiaohui Qu, Diogo A. R. S. Latino, João Aires-de-Sousa
:
A big data approach to the ultra-fast prediction of DFT-calculated bond energies. 34 - Robert Smith, Ryan Williamson, Dan Ventura, John T. Prince
:
Rubabel: Wrapping OpenBabel with Ruby. 35 - Adrià Cereto-Massagué
, María José Ojeda
, Robbie P. Joosten
, Cristina Valls
, Miquel Mulero
, M. Josepa Salvado
, Anna Arola-Arnal
, Lluís Arola
, Santiago Garcia-Vallvé
, Gerard Pujadas
:
The good, the bad and the dubious: VHELIBS, a validation helper for ligands and binding sites. 36 - Hamse Y. Mussa, John B. O. Mitchell, Robert C. Glen:
Full "Laplacianised" posterior naive Bayesian algorithm. 37 - Matthias Hilbig, Sascha Urbaczek, Inken Groth, Stefan Heuser, Matthias Rarey:
MONA - Interactive manipulation of molecule collections. 38 - David Sehnal, Radka Svobodová Vareková, Karel Berka, Lukás Pravda, Veronika Navrátilová, Pavel Banás, Crina-Maria Ionescu, Michal Otyepka, Jaroslav Koca:
MOLE 2.0: advanced approach for analysis of biomacromolecular channels. 39 - Ségolène Caboche:
LeView: automatic and interactive generation of 2D diagrams for biomacromolecule/ligand interactions. 40 - Gerard J. P. van Westen, Remco F. Swier, Jörg K. Wegner
, Adriaan P. IJzerman
, Herman W. T. van Vlijmen, Andreas Bender:
Benchmarking of protein descriptor sets in proteochemometric modeling (part 1): comparative study of 13 amino acid descriptor sets. 41 - Gerard J. P. van Westen
, Remco F. Swier, Isidro Cortes-Ciriano
, Jörg K. Wegner
, John P. Overington, Adriaan P. IJzerman
, Herman W. T. van Vlijmen, Andreas Bender:
Benchmarking of protein descriptor sets in proteochemometric modeling (part 2): modeling performance of 13 amino acid descriptor sets. 42 - Sereina Riniker
, Gregory A. Landrum:
Similarity maps - a visualization strategy for molecular fingerprints and machine-learning methods. 43 - Gus R. Rosania, Kerby Shedden, Nan Zheng, Xinyuan Zhang
:
Visualizing chemical structure-subcellular localization relationships using fluorescent small molecules as probes of cellular transport. 44 - Guenter Grethe, Jonathan M. Goodman
, Chad H. G. Allen:
International chemical identifier for reactions (RInChI). 45 - Clarke W. Earley:
CH5M3D: an HTML5 program for creating 3D molecular structures. 46 - Svetoslav H. Slavov, Bruce A. Pearce, Dan A. Buzatu, Jon G. Wilkes, Richard D. Beger:
Complementary PLS and KNN algorithms for improved 3D-QSDAR consensus modeling of AhR binding. 47 - Joos Kiener:
Molecule database framework: a framework for creating database applications with chemical structure search capability. 48 - Shardul Paricharak, Tom Klenka, Martin Augustin, Umesh A. Patel, Andreas Bender:
Are phylogenetic trees suitable for chemogenomics analyses of bioactivity data sets: the importance of shared active compounds and choosing a suitable data embedding method, as exemplified on Kinases. 49 - Tobias Girschick, Lucia Puchbauer, Stefan Kramer:
Improving structural similarity based virtual screening using background knowledge. 50 - Jiangyong Gu, Yuanshen Gui, Lirong Chen, Gu Yuan, Xiaojie Xu:
CVDHD: a cardiovascular disease herbal database for drug discovery and network pharmacology. 51 - Simon J. Coles
, Jeremy G. Frey
, Colin L. Bird, Richard J. Whitby, Aileen E. Day:
First steps towards semantic descriptions of electronic laboratory notebook records. 52

manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
