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2020 – today
- 2023
[j15]Pietro Pinoli
, Arif Canakoglu, Stefano Ceri, Matteo Chiara, Erika Ferrandi, Luca Minotti, Anna Bernasconi:
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants. Database J. Biol. Databases Curation 2023 (2023)- [e2]Irena Koprinska, Paolo Mignone, Riccardo Guidotti, Szymon Jaroszewicz, Holger Fröning, Francesco Gullo, Pedro M. Ferreira, Damian Roqueiro, Gaia Ceddia, Slawomir Nowaczyk, João Gama, Rita P. Ribeiro, Ricard Gavaldà, Elio Masciari, Zbigniew W. Ras, Ettore Ritacco, Francesca Naretto, Andreas Theissler, Przemyslaw Biecek, Wouter Verbeke, Gregor Schiele, Franz Pernkopf, Michaela Blott, Ilaria Bordino, Ivan Luciano Danesi, Giovanni Ponti, Lorenzo Severini, Annalisa Appice, Giuseppina Andresini, Ibéria Medeiros, Guilherme Graça, Lee A. D. Cooper, Naghmeh Ghazaleh, Jonas Richiardi, Diego Saldana Miranda, Konstantinos Sechidis, Arif Canakoglu, Sara Pidò, Pietro Pinoli, Albert Bifet, Sepideh Pashami:
Machine Learning and Principles and Practice of Knowledge Discovery in Databases - International Workshops of ECML PKDD 2022, Grenoble, France, September 19-23, 2022, Proceedings, Part I. Communications in Computer and Information Science 1752, Springer 2023, ISBN 978-3-031-23617-4 [contents] - [e1]Irena Koprinska, Paolo Mignone, Riccardo Guidotti, Szymon Jaroszewicz, Holger Fröning, Francesco Gullo, Pedro M. Ferreira, Damian Roqueiro, Gaia Ceddia, Slawomir Nowaczyk, João Gama, Rita P. Ribeiro, Ricard Gavaldà, Elio Masciari, Zbigniew W. Ras, Ettore Ritacco, Francesca Naretto, Andreas Theissler, Przemyslaw Biecek, Wouter Verbeke, Gregor Schiele, Franz Pernkopf, Michaela Blott, Ilaria Bordino, Ivan Luciano Danesi, Giovanni Ponti, Lorenzo Severini, Annalisa Appice, Giuseppina Andresini, Ibéria Medeiros, Guilherme Graça, Lee A. D. Cooper, Naghmeh Ghazaleh, Jonas Richiardi, Diego Saldana Miranda, Konstantinos Sechidis, Arif Canakoglu, Sara Pidò, Pietro Pinoli, Albert Bifet, Sepideh Pashami:
Machine Learning and Principles and Practice of Knowledge Discovery in Databases - International Workshops of ECML PKDD 2022, Grenoble, France, September 19-23, 2022, Proceedings, Part II. Communications in Computer and Information Science 1753, Springer 2023, ISBN 978-3-031-23632-7 [contents] - 2022
- [j14]Luca Cilibrasi, Pietro Pinoli, Anna Bernasconi, Arif Canakoglu, Matteo Chiara, Stefano Ceri:
ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time. Bioinform. 38(7): 1988-1994 (2022) - [j13]Tommaso Alfonsi, Anna Bernasconi, Arif Canakoglu, Marco Masseroli:
Genomic data integration and user-defined sample-set extraction for population variant analysis. BMC Bioinform. 23(1): 401 (2022) - [j12]Pietro Crovari, Sara Pidò, Pietro Pinoli, Anna Bernasconi, Arif Canakoglu, Franca Garzotto, Stefano Ceri:
GeCoAgent: A Conversational Agent for Empowering Genomic Data Extraction and Analysis. ACM Trans. Comput. Heal. 3(1): 3:1-3:29 (2022) - [j11]Francisco Cristovao, Silvia Cascianelli, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli:
Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer and Multi-Omic Data. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 121-134 (2022) - [j10]Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Stefano Ceri:
META-BASE: A Novel Architecture for Large-Scale Genomic Metadata Integration. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 543-557 (2022) - 2021
- [j9]Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Stefano Ceri:
The road towards data integration in human genomics: players, steps and interactions. Briefings Bioinform. 22(1): 30-44 (2021) - [j8]Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Pietro Pinoli, Stefano Ceri:
A review on viral data sources and search systems for perspective mitigation of COVID-19. Briefings Bioinform. 22(2): 664-675 (2021) - [j7]Arif Canakoglu, Pietro Pinoli, Andrea Gulino, Luca Nanni, Marco Masseroli, Stefano Ceri:
Federated sharing and processing of genomic datasets for tertiary data analysis. Briefings Bioinform. 22(3) (2021) - [j6]Anna Bernasconi, Luca Cilibrasi, Ruba Al Khalaf, Tommaso Alfonsi, Stefano Ceri, Pietro Pinoli, Arif Canakoglu:
EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species. Database J. Biol. Databases Curation 2021 (2021) - [j5]Arif Canakoglu, Pietro Pinoli, Anna Bernasconi, Tommaso Alfonsi, Damianos P. Melidis, Stefano Ceri:
ViruSurf: an integrated database to investigate viral sequences. Nucleic Acids Res. 49(Database-Issue): D817-D824 (2021) - [c19]Amirreza Rouhi, Luca Nanni, Arif Canakoglu, Pietro Pinoli, Stefano Ceri:
Ensemble Feature Selection for Single Cell Chromatin Conformation Analysis. ICBBT 2021: 209-216 - 2020
- [c18]Anna Bernasconi, Arif Canakoglu, Pietro Pinoli, Stefano Ceri:
Empowering Virus Sequence Research Through Conceptual Modeling. ER 2020: 388-402 - [c17]Andrea Gulino, Arif Canakoglu, Stefano Ceri, Danilo Ardagna:
Performance Prediction for Data-driven Workflows on Apache Spark. MASCOTS 2020: 1-8 - [c16]Giuseppe Cannizzaro, Michele Leone, Anna Bernasconi, Arif Canakoglu, Mark J. Carman:
Automated Integration of Genomic Metadata with Sequence-to-Sequence Models. ECML/PKDD (5) 2020: 187-203 - [d1]Fabio Cumbo, Eleonora Cappelli, Anna Bernasconi, Arif Canakoglu, Stefano Ceri, Marco Masseroli, Emanuel Weitschek:
OpenGDC. Zenodo, 2020
2010 – 2019
- 2019
- [j4]Arif Canakoglu, Anna Bernasconi, Andrea Colombo, Marco Masseroli, Stefano Ceri:
GenoSurf: metadata driven semantic search system for integrated genomic datasets. Database J. Biol. Databases Curation 2019: baz132 (2019) - [j3]Marco Masseroli, Arif Canakoglu, Pietro Pinoli, Abdulrahman Kaitoua, Andrea Gulino, Olha Horlova, Luca Nanni, Anna Bernasconi, Stefano Perna, Eirini Stamoulakatou, Stefano Ceri:
Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data. Bioinform. 35(5): 729-736 (2019) - [j2]Luca Nanni, Pietro Pinoli, Arif Canakoglu, Stefano Ceri:
PyGMQL: scalable data extraction and analysis for heterogeneous genomic datasets. BMC Bioinform. 20(1): 560:1-560:11 (2019) - [c15]Andrea Gulino, Eirini Stamoulakatou, Arif Canakoglu, Pietro Pinoli:
Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types. BIBM 2019: 652-655 - [c14]Silvia Cascianelli, Francisco Cristovao, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli:
Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping. CIBB 2019: 232-244 - [c13]Anna Bernasconi, Arif Canakoglu, Stefano Ceri:
Exploiting Conceptual Modeling for Searching Genomic Metadata: A Quantitative and Qualitative Empirical Study. ER Workshops 2019: 83-94 - [c12]Anna Bernasconi, Arif Canakoglu, Stefano Ceri:
From a Conceptual Model to a Knowledge Graph for Genomic Datasets. ER 2019: 352-360 - 2018
- [c11]Arif Canakoglu, Luca Nanni, Artur Sokolovsky, Stefano Ceri:
Designing and Evaluating Deep Learning Models for Cancer Detection on Gene Expression Data. CIBB 2018: 249-261 - [c10]Stefano Ceri, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli:
Demonstration of GenoMetric Query Language. CIKM 2018: 1887-1890 - [c9]Guray Golcuk, Mustafa Anil Tuncel, Arif Canakoglu:
Exploiting Ladder Networks for Gene Expression Classification. IWBBIO (1) 2018: 270-278 - [c8]Luca Nanni, Pietro Pinoli, Arif Canakoglu, Stefano Ceri:
Exploring Genomic Datasets: from Batch to Interactive and Back. ExploreDB@SIGMOD/PODS 2018: 3:1-3:6 - [c7]Anna Bernasconi, Arif Canakoglu, Andrea Colombo, Stefano Ceri:
Ontology-driven metadata enrichment for genomic datasets. SWAT4LS 2018 - 2017
- [c6]Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli:
Experiences in the Development of a Data Management System for Genomics. DATA (Revised Selected Papers) 2017: 197-212 - [c5]Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli:
Data-Driven Genomic Computing: Making sense of Signals from the Genome. DAMDID/RCDL 2017: 1-2 - [c4]Stefano Ceri, Anna Bernasconi, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli:
Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome. DAMDID/RCDL (Selected Papers) 2017: 46-57 - 2016
- [b1]Arif Canakoglu:
Modular schema based data warehousing of evolving, redundant and incomplete data: application to biomolecular knowledge data integration and inference. Polytechnic University of Milan, Italy, 2016 - [j1]Marco Masseroli, Arif Canakoglu, Stefano Ceri:
Integration and Querying of Genomic and Proteomic Semantic Annotations for Biomedical Knowledge Extraction. IEEE ACM Trans. Comput. Biol. Bioinform. 13(2): 209-219 (2016) - [c3]Arif Canakoglu, Stefano Ceri, Marco Masseroli:
Biomolecular Annotation Integration and Querying to Help Unveiling New Biomedical Knowledge. IWBBIO 2016: 802-813 - 2013
- [c2]Arif Canakoglu, Marco Masseroli, Stefano Ceri, Luca Tettamanti, Giorgio Ghisalberti, Alessandro Campi:
Integrative warehousing of biomolecular information to support complex multi-topic queries for biomedical knowledge discovery. BIBE 2013: 1-4 - 2011
- [c1]Arif Canakoglu, Giorgio Ghisalberti, Marco Masseroli:
Integration of Biomolecular Interaction Data in a Genomic and Proteomic Data Warehouse to Support Biomedical Knowledge Discovery. CIBB 2011: 112-126
Coauthor Index
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