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2020 – today
- 2024
[j11]Michele Gentili, Kimberly Glass, Enrico Maiorino, Brian D. Hobbs, Zhonghui Xu, Peter J. Castaldi, Michael H. Cho, Craig P. Hersh, Dandi Qiao, Jarrett D. Morrow, Vincent J. Carey, John Platig, Edwin K. Silverman:
Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. PLoS Comput. Biol. 20(10): 1011079 (2024)- [c5]Enakshi Saha, Viola Fanfani, Panagiotis Mandros, Marouen Ben Guebila, Jonas Fischer, Katherine H. Shutta, Kimberly Glass, Dawn L. DeMeo, Camila Miranda Lopes-Ramos, John Quackenbush:
BONOBO: Bayesian Optimized Sample-Specific Networks Obtained by Omics Data. RECOMB 2024: 328-331 - 2023
- [j10]Ping-Han Hsieh, Camila Miranda Lopes-Ramos, Manuela Zucknick
, Geir Kjetil Sandve, Kimberly Glass, Marieke L. Kuijjer:
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data. Bioinform. 39(10) (2023) - 2022
- [j9]Marouen Ben Guebila, Camila Miranda Lopes-Ramos, Deborah A. Weighill, Abhijeet Rajendra Sonawane, Rebekka Burkholz, Behrouz Shamsaei, John Platig, Kimberly Glass, Marieke L. Kuijjer, John Quackenbush:
GRAND: a database of gene regulatory network models across human conditions. Nucleic Acids Res. 50(D1): 610-621 (2022) - 2021
- [c4]Deborah A. Weighill, Marouen Ben Guebila, Camila Miranda Lopes-Ramos, Kimberly Glass, John Quackenbush, John Platig, Rebekka Burkholz:
Gene Regulatory Network Inference as Relaxed Graph Matching. AAAI 2021: 10263-10272 - 2020
- [j8]Marieke L. Kuijjer, Maud Fagny, Alessandro Marin, John Quackenbush, Kimberly Glass:
PUMA: PANDA Using MicroRNA Associations. Bioinform. 36(18): 4765-4773 (2020)
2010 – 2019
- 2019
- [c3]Arlene E. Chung, Kimberly Glass, Jacob Leisey-Bartsch, Lucas Mentch, Nils Gehlenborg, David Gotz:
Precision VISSTA: Bring-Your-Own-Device (BYOD) mHealth Data for Precision Health. AMIA 2019 - [c2]Tim Coleman, Lucas Mentch, Kimberly Glass, David Gotz, Nils Gehlenborg, Arlene E. Chung:
Precision VISSTA: Machine Learning Prediction and Inference for Bring-Your-Own-Device (BYOD) mHealth Data. AMIA 2019 - 2017
- [j7]Daniel Schlauch, Joseph N. Paulson, Albert Young, Kimberly Glass, John Quackenbush:
Estimating gene regulatory networks with pandaR. Bioinform. 33(14): 2232-2234 (2017) - [j6]Reiko Nishihara, Kimberly Glass, Kosuke Mima, Tsuyoshi Hamada, Jonathan A. Nowak, Zhi Rong Qian, Peter Kraft, Edward L. Giovannucci, Charles S. Fuchs, Andrew T. Chan, John Quackenbush, Shuji Ogino, Jukka-Pekka Onnela:
Biomarker correlation network in colorectal carcinoma by tumor anatomic location. BMC Bioinform. 18(1): 304 (2017) - [j5]Joseph N. Paulson, Cho-Yi Chen, Camila Miranda Lopes-Ramos, Marieke L. Kuijjer, John Platig, Abhijeet R. Sonawane, Maud Fagny, Kimberly Glass, John Quackenbush:
Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. BMC Bioinform. 18(1): 437:1-437:10 (2017) - 2016
- [j4]David G. P. van IJzendoorn, Kimberly Glass, John Quackenbush, Marieke L. Kuijjer:
PyPanda: a Python package for gene regulatory network reconstruction. Bioinform. 32(21): 3363-3365 (2016) - 2015
- [j3]Kimberly Glass, John Quackenbush, Dimitrios Spentzos, Benjamin Haibe-Kains, Guo-Cheng Yuan:
A network model for angiogenesis in ovarian cancer. BMC Bioinform. 16: 115:1-115:17 (2015) - [j2]Kimberly Glass, Michelle Girvan:
Finding New Order in Biological Functions from the Network Structure of Gene Annotations. PLoS Comput. Biol. 11(11) (2015) - [c1]Kimberly Glass, John Quackenbush, Jeremy Kepner:
High performance computing of gene regulatory networks using a message-passing model. HPEC 2015: 1-6 - 2014
- [j1]Kimberly Glass, John Quackenbush, Edwin K. Silverman, Bartolome Celli, Stephen I. Rennard, Guo-Cheng Yuan, Dawn L. DeMeo:
Sexually-dimorphic targeting of functionally-related genes in COPD. BMC Syst. Biol. 8: 118 (2014)
Coauthor Index
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