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ORCIDDamion M. Dooley
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- affiliation: Simon Fraser University, Burnaby, BC, Canada
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2020 – today
- 2024
[j12]William D. Duncan, Matthew Diller, Damion M. Dooley, William R. Hogan, John Beverley
:
Concretizing plan specifications as realizables within the OBO foundry. J. Biomed. Semant. 15(1): 15 (2024)- [j11]Sabrina Toro, Anna V. Anagnostopoulos, Susan M. Bello, Kai Blumberg, Rhiannon Cameron, Leigh Carmody, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Petra Fey, Pascale Gaudet, Nomi L. Harris, Marcin P. Joachimiak, Leila Kiani, Tiago Lubiana, Monica C. Munoz-Torres, Shawn T. O'Neil, David Osumi-Sutherland, Aleix Puig-Barbe, Justin T. Reese, Leonore Reiser, Sofia M. C. Robb, Troy Ruemping, James Seager, Eric Sid, Raymund Stefancsik, Magalie Weber, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall:
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). J. Biomed. Semant. 15(1): 19 (2024) - [j10]Damion M. Dooley, Magalie Weber, Liliana Ibanescu, Matthew Lange, Lauren E. Chan, Larisa N. Soldatova, Chen Yang, Robert Warren, Cogan Shimizu, Hande McGinty, William Hsiao:
Food process ontology requirements. Semantic Web 15(4): 1133-1164 (2024) - [j9]Katherine Thornton, Kenneth Seals-Nutt, Mika Matsuzaki, Damion M. Dooley:
Reuse of the FoodOn ontology in a knowledge base of food composition data. Semantic Web 15(4): 1195-1206 (2024) - [j8]Damion M. Dooley, Liliana Andrés-Hernández, Georgeta Bordea, Leigh Carmody, Duccio Cavalieri, Lauren E. Chan, Pol Castellano-Escuder, Carl Lachat, Fleur Mougin, Francesco Vitali, Chen Yang, Magalie Weber, Hande Küçük-McGinty, Matthew Lange:
OBO Foundry food ontology interconnectivity. Semantic Web 15(4): 1239-1258 (2024) - 2023
- [j7]Damion M. Dooley, Tarini Naravane:
Ontological how and why: action and objective of planned processes in the food domain. Frontiers Artif. Intell. 6 (2023) - [j6]Brian P. Alcock, William Huynh, Romeo Chalil, Keaton W. Smith, Amogelang R. Raphenya, Mateusz A. Wlodarski, Arman Edalatmand, Aaron J. Petkau, Sohaib A. Syed, Kara K. Tsang, Sheridan J. C. Baker, Mugdha Dave, Madeline C. McCarthy, Karyn M. Mukiri, Jalees A. Nasir, Bahar Golbon, Hamna Imtiaz, Xingjian Jiang, Komal Kaur, Megan Kwong, Zi Cheng Liang, Keyu C. Niu, Prabakar Shan, Jasmine Y. J. Yang, Kristen L. Gray, Gemma Hoad, Baofeng Jia, Timsy Bhando, Lindsey A. Carfrae, Maya A. Farha, Shawn French, Rodion Gordzevich, Kenneth Rachwalski, Megan M. Tu, Emily Bordeleau, Damion M. Dooley, Emma J. Griffiths, Haley L. Zubyk, Eric D. Brown, Finlay Maguire, Robert G. Beiko, William W. L. Hsiao, Fiona S. L. Brinkman, Gary H. Van Domselaar, Andrew G. McArthur:
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Res. 51(D1): 690-699 (2023) - [c15]Damion M. Dooley, Magalie Weber, Liliana Ibanescu, Matthew Lange, Lauren E. Chan, Larisa N. Soldatova, Chen Yang, Robert Warren, Cogan Shimizu, Hande McGinty, William Hsiao:
Besoins ontologiques pour la transformation des aliments. IC 2023: 40-47 - [c14]Madeline Iseminger, Muhammad Zohaib Anwar, Rhiannon Cameron, Damion M. Dooley, Paul Gordon, Emma J. Griffiths, Anoosha Sehar, Khushi Vora, William Hsiao:
Tracking the Functional Effects of SARS-CoV-2 Genomic Variants: an Ontology-Driven Approach. ICBO 2023: 182-183 - [c13]John Beverley, Sam Smith, Matthew Diller, William D. Duncan, Jie Zheng, John W. Judkins, William R. Hogan, Robin McGill, Damion M. Dooley, Yongqun He:
The Occupation Ontology (OccO): Building a Bridge between Global Occupational Standards. JOWO 2023 - [e3]Fumiaki Toyoshima, Megan Katsumi, Guendalina Righetti, Stefano De Giorgis, Maria M. Hedblom, Oliver Kutz, Boyan Brodaric, Michael Grüninger, Torsten Hahmann, Damion Dooley Simon, Matthew Lange, Hande Küçük-McGinty, Anoosha Sehar Simon, Rhiannon Cameron, Bart Gajderowicz, Daniela Rosu, Janna Hastings, Davide Audrito, Luigi Di Caro, Francesca Grasso, Roberto Nai, Emilio Sulis, Loris Bozzato, Cogan Shimizu, Antoine Zimmermann, Riccardo Baratella, Stefano Borgo, Sergio de Cesare, Tiago Prince Sales:
Proceedings of the Joint Ontology Workshops 2023 Episode IX: The Quebec Summer of Ontology co-located with the 13th International Conference on Formal Ontology in Information Systems (FOIS 2023), Sherbrooke, Québec, Canada, July 19-20, 2023. CEUR Workshop Proceedings 3637, CEUR-WS.org 2023 [contents] - [i1]Sabrina Toro, Anna V. Anagnostopoulos, Sue Bello, Kai Blumberg, Rhiannon Cameron, Leigh Carmody, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Petra Fey, Pascale Gaudet, Nomi L. Harris, Marcin P. Joachimiak, Leila Kiani, Tiago Lubiana, Monica C. Munoz-Torres, Shawn T. O'Neil, David Osumi-Sutherland, Aleix Puig, Justin P. Reese, Leonore Reiser, Sofia M. C. Robb, Troy Ruemping, James Seager, Eric Sid, Raymund Stefancsik, Magalie Weber, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall:
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). CoRR abs/2312.10904 (2023) - 2022
- [j5]Abderahman Rejeb, John G. Keogh, Wayne Martindale, Damion M. Dooley, Edward Smart, Steven Simske, Samuel Fosso Wamba, John G. Breslin, Kosala Yapa Bandara, Subhasis Thakur, Kelly Liu, Bridgette Crowley, Sowmya Desaraju, Angela Ospina, Horia Bradau:
Charting Past, Present, and Future Research in the Semantic Web and Interoperability. Future Internet 14(6): 161 (2022) - [c12]Sam Smith, Damion M. Dooley, Eric Merrell, John Beverley, Yongqun He:
Toward an Occupation Ontology, OccO. ICBO 2022: 1 - [c11]Yongqun He, Samuel Smith, Damion M. Dooley:
Foundational Development of an Occupation Ontology. JOWO 2022 - [e2]Tiago Prince Sales, Maria M. Hedblom, He Tan, Guendalina Righetti, Oliver Kutz, Martin Glauer, Janna Hastings, Till Mossakowski, Fabian Neuhaus, Lucía Gómez Álvarez, Rafael Peñaloza, Srdjan Vesic, Claudenir Morais Fonseca, Jona Thai, Stefano Borgo, Damion M. Dooley, Rhiannon Cameron, Lauren E. Chan, Duccio Cavalieri, Robert Warren, Hande Küçük-McGinty, Matthew Lange, Fernanda Forea, Francesco Vitali, Bart Gajderowicz, Daniela Rosu, Aldo Gangemi, Robert Porzel, Daniel Beßler, Mihai Pomarlan, Mohammed Diab, Alberto Olivares Alarcos:
Proceedings of the Joint Ontology Workshops 2022 Episode VIII: The Svear Sommar of Ontology, Jönköping, Sweden, August 15-19, 2022. CEUR Workshop Proceedings 3249, CEUR-WS.org 2022 [contents] - 2021
- [j4]Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters:
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation 2021 (2021) - [j3]Randi Vita, Jie Zheng, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr.:
Standardization of assay representation in the Ontology for Biomedical Investigations. Database J. Biol. Databases Curation 2021 (2021) - [c10]Damion M. Dooley, Liliana Andrés-Hernández, Georgeta Bordea, Leigh Carmody, Duccio Cavalieri, Lauren E. Chan, Pol Castellano-Escuder, Carl Lachat, Fleur Mougin, Francesco Vitali, Chen Yang, Magalie Weber, Matthew Lange:
OBO Foundry Food Ontology Interconnectivity. JOWO 2021 - [c9]Anoosha Sehar, Damion M. Dooley, Amanda Windsor, William L. Hsiao:
Streamlining FoodOn Seafood Nomenclature using a Semi-automated ROBOT Template-driven Approach. JOWO 2021 - [e1]Emilio M. Sanfilippo, Oliver Kutz, Nicolas Troquard, Torsten Hahmann, Claudio Masolo, Robert Hoehndorf, Randi Vita, Maria M. Hedblom, Guendalina Righetti, Dusan Sormaz, Walter Terkaj, Tiago Prince Sales, Sergio de Cesare, Frederik Gailly, Giancarlo Guizzardi, Mark Lycett, Chris Partridge, Oscar Pastor, Daniel Beßler, Stefano Borgo, Mohammed Diab, Aldo Gangemi, Alberto Olivares Alarcos, Mihai Pomarlan, Robert Porzel, Ludger Jansen, Mathias Brochhausen, Daniele Porello, Pawel Garbacz, Selja Seppälä, Michael Grüninger, Amanda Vizedom, Damion M. Dooley, Robert Warren, Hande Küçük-McGinty, Matthew Lange, Alsayed Algergawy, Naouel Karam, Friederike Klan, Franck Michel, Ilaria Rosati:
Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), and the 12th International Conference on Biomedical Ontologies (ICBO 2021), Bolzano, Italy, September 11-18, 2021. CEUR Workshop Proceedings 2969, CEUR-WS.org 2021 [contents] - 2020
- [j2]Brian P. Alcock, Amogelang R. Raphenya, Tammy T. Y. Lau, Kara K. Tsang, Mégane Bouchard, Arman Edalatmand, William Huynh, Anna-Lisa V. Nguyen, Annie A. Cheng, Sihan Liu, Sally Y. Min, Anatoly Miroshnichenko, Hiu-Ki Tran, Rafik E. Werfalli, Jalees A. Nasir, Martins Oloni, David J. Speicher, Alexandra Florescu, Bhavya Singh, Mateusz Faltyn, Anastasia Hernández-Koutoucheva, Arjun N. Sharma, Emily Bordeleau, Andrew C. Pawlowski, Haley L. Zubyk, Damion M. Dooley, Emma J. Griffiths, Finlay Maguire, Geoffrey L. Winsor, Robert G. Beiko, Fiona S. L. Brinkman, William W. L. Hsiao, Gary H. Van Domselaar, Andrew G. McArthur:
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic Acids Res. 48(Database-Issue): D517-D525 (2020)
2010 – 2019
- 2019
- [c8]Dalia A. Alghamdi, Damion M. Dooley, Gurinder Gosal, Emma J. Griffiths, William W. L. Hsiao:
NGBO: Introducing -omics Data into Biobanking Ontology. ICBO 2019: 1 - [c7]Damion M. Dooley, Ivan S. Gill, Emma J. Griffiths, William L. Hsiao:
An Ontology-Driven Web Platform for Publishing Data Specifications to Support Data Sharing. ICBO 2019: 1 - [c6]Damion M. Dooley, William W. L. Hsiao:
3D Visualization of Application Ontology Class Hierarchies. JOWO 2019 - 2018
- [c5]Dalia A. Alghamdi, Damion M. Dooley, Emma J. Griffiths, Gurinder Pal Gosal, William W. L. Hsiao:
NGBO: The Introduction of -omics Data to Biobanking Ontology. ISWC (P&D/Industry/BlueSky) 2018 - 2017
- [c4]Dalia A. Alghamdi, Damion M. Dooley, Gurinder Gosal, Emma J. Griffiths, Fiona S. L. Brinkman, William W. L. Hsiao:
FoodOn: A Semantic Ontology Approach for Mapping Foodborne Disease Metadata. ICBO 2017 - [c3]Damion M. Dooley, Emma J. Griffiths, Gurinder Gosal, Fiona S. L. Brinkman, William W. L. Hsiao:
The Genomic Epidemiology Ontology and GEEM Ontology Reusability Platform. JOWO 2017 - 2016
- [j1]Damion M. Dooley, Aaron J. Petkau, Gary H. Van Domselaar, William W. L. Hsiao:
Sequence database versioning for command line and Galaxy bioinformatics servers. Bioinform. 32(8): 1275-1277 (2016) - [c2]Damion M. Dooley, Emma J. Griffiths, Fiona S. L. Brinkman, William W. L. Hsiao:
An OBI Ontology Datum Proof Sheet. ICBO/BioCreative 2016 - [c1]Emma J. Griffiths, Damion M. Dooley, Pier Luigi Buttigieg, Robert Hoehndorf, Fiona S. L. Brinkman, William W. L. Hsiao:
FoodON: A Global Farm-to-Fork Food Ontology. ICBO/BioCreative 2016
Coauthor Index
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