default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDTomás Vinar
Person information
- affiliation: Comenius University, Bratislava, Slovakia
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
[j21]Brona Brejová, Travis Gagie, Eva Herencsárová, Tomás Vinar:
Maximum-scoring path sets on pangenome graphs of constant treewidth. Frontiers Bioinform. 4 (2024)- [j20]Tomás Vinar:
RECOMB Satellite Conference on Comparative Genomics(RECOMB-CG 2023). J. Comput. Biol. 31(4): 275-276 (2024) - [c43]Askar Gafurov, Tomás Vinar, Paul Medvedev, Brona Brejová:
Efficient Analysis of Annotation Colocalization Accounting for Genomic Contexts. RECOMB 2024: 38-53 - [c42]Tomás Vinar:
Bioinformatics of Pathogens (Invited Talk). WABI 2024: 1:1-1:2 - 2023
- [j19]Aniket C. Mane, Mahsa Faizrahnemoon, Tomás Vinar, Brona Brejová
, Cédric Chauve:
PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning. Bioinform. 39(Supplement-1): 288-296 (2023) - [c41]Vladimír Boza, Eduard Batmendijn, Peter Peresíni, Viktória Hodorová, Hana Lichancová, Rastislav Rabatin, Brona Brejová, Jozef Nosek, Tomás Vinar:
Precise Nanopore Signal Modeling Improves Unsupervised Single-Molecule Methylation Detection. ITAT 2023: 223-231 - [e3]Katharina Jahn, Tomás Vinar:
Comparative Genomics - 20th International Conference, RECOMB-CG 2023, Istanbul, Turkey, April 14-15, 2023, Proceedings. Lecture Notes in Computer Science 13883, Springer 2023, ISBN 978-3-031-36910-0 [contents] - 2022
- [j18]Askar Gafurov, Andrej Baláz, Fabian Amman, Kristína Borsová, Viktória Cabanová, Boris Klempa, Andreas Bergthaler, Tomás Vinar, Brona Brejová:
VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples. BMC Bioinform. 23(1): 551 (2022) - [j17]Vladimír Boza, Peter Peresíni, Brona Brejová, Tomás Vinar:
Dynamic Pooling Improves Nanopore Base Calling Accuracy. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3416-3424 (2022) - 2021
- [j16]Peter Peresíni, Vladimír Boza, Brona Brejová, Tomás Vinar:
Nanopore base calling on the edge. Bioinform. 37(24): 4661-4667 (2021) - [c40]Askar Gafurov, Tomás Vinar, Brona Brejová:
Probabilistic Models of k-mer Frequencies (Extended Abstract). CiE 2021: 227-236 - [c39]Brona Brejová, Viktória Hodorová, Kristína Borsová, Viktória Cabanová, Tomás Szemes, Matej Misík, Boris Klempa, Jozef Nosek, Tomás Vinar:
Sequencing SARS-CoV-2 in Slovakia: An Unofficial Genomic Surveillance Report. ITAT 2021: 229-239 - [c38]Katarína Bodová, Vladimír Boza, Brona Brejová, Richard Kollár, Katarína Mikusová, Tomás Vinar:
Time-adjusted Analysis Shows Weak Associations Between BCG Vaccination Policy and COVID-19 Disease Progression. ITAT 2021: 255-262 - [c37]Adrian Goga, Miroslav Böhmer, Rastislav Hekel, Werner Krampl, Bronislava Brejová, Tomás Vinar, Jaroslav Budis, Tomás Szemes:
SnakeLines Workflow for SARS-CoV-2 Variant Detection from Next-Generation Sequencing Reads. ITAT 2021: 293-300 - [c36]Askar Gafurov, Andrej Baláz, Tomás Vinar, Brona Brejová:
Estimation of Proportions of SARS-CoV-2 Variants in a Mixed Sequencing Sample. ITAT 2021: 301-307 - [c35]Vladimír Boza, Matej Fedor, Kristína Borsová, Viktória Cabanová, Jana Cerníková, Viktória Hodorová, Peter Peresíni, Klára Sládecková, Boris Klempa, Jozef Nosek, Brona Brejová, Tomás Vinar:
Alternative Base Callers Aid Real-time Analysis of SARS-CoV-2 Sequencing Runs. ITAT 2021: 308-313 - [e2]Brona Brejová, Lucie Ciencialová, Martin Holena, Frantisek Mráz, Dana Pardubská, Martin Plátek, Tomás Vinar:
Proceedings of the 21st Conference Information Technologies - Applications and Theory (ITAT 2021), Hotel Heľpa, Nízke Tatry and Muránska planina, Slovakia, September 24-28, 2021. CEUR Workshop Proceedings 2962, CEUR-WS.org 2021 [contents] - [i7]Vladimír Boza, Peter Peresíni, Brona Brejová, Tomás Vinar:
Dynamic Pooling Improves Nanopore Base Calling Accuracy. CoRR abs/2105.07520 (2021) - 2020
- [j15]Vladimír Boza, Peter Peresíni, Brona Brejová, Tomás Vinar:
DeepNano-blitz: a fast base caller for MinION nanopore sequencers. Bioinform. 36(14): 4191-4192 (2020) - [i6]Peter Peresíni, Vladimír Boza, Brona Brejová, Tomás Vinar:
Nanopore Base Calling on the Edge. CoRR abs/2011.04312 (2020)
2010 – 2019
- 2017
- [j14]Brona Brejová, Askar Gafurov, Dana Pardubská, Michal Sabo, Tomás Vinar:
Isometric gene tree reconciliation revisited. Algorithms Mol. Biol. 12(1): 17:1-17:16 (2017) - [c34]Mário Lipovský, Tomás Vinar, Brona Brejová:
Approximate Abundance Histograms and Their Use for Genome Size Estimation. ITAT 2017: 27-34 - [c33]Rastislav Rabatin, Brona Brejová, Tomás Vinar:
Using Sequence Ensembles for Seeding Alignments of MinION Sequencing Data. ITAT 2017: 48-54 - 2016
- [j13]Ladislav Rampásek, Randi M. Jimenez, Andrej Lupták, Tomás Vinar, Brona Brejová:
RNA motif search with data-driven element ordering. BMC Bioinform. 17: 216 (2016) - [c32]Martin Macko, Martin Králik, Brona Brejová, Tomás Vinar:
OB-Fold Recognition Combining Sequence and Structural Motifs. ITAT 2016: 18-25 - [c31]Brona Brejová, Askar Gafurov, Dana Pardubská, Michal Sabo, Tomás Vinar:
Isometric Gene Tree Reconciliation Revisited. WABI 2016: 40-51 - [i5]Rastislav Rabatin, Brona Brejová, Tomás Vinar:
Using Sequence Ensembles for Seeding Alignments of MinION Sequencing Data. CoRR abs/1606.08719 (2016) - 2015
- [j12]Vladimír Boza, Brona Brejová, Tomás Vinar:
GAML: genome assembly by maximum likelihood. Algorithms Mol. Biol. 10: 18 (2015) - [j11]Michal Nánási, Tomás Vinar, Brona Brejová:
Sequence annotation with HMMs: New problems and their complexity. Inf. Process. Lett. 115(6-8): 635-639 (2015) - [c30]Vladimír Boza, Jakub Jursa, Brona Brejová, Tomás Vinar:
Fishing in Read Collections: Memory Efficient Indexing for Sequence Assembly. SPIRE 2015: 188-198 - [c29]Michal Hozza, Tomás Vinar, Brona Brejová:
How Big is that Genome? Estimating Genome Size and Coverage from k-mer Abundance Spectra. SPIRE 2015: 199-209 - 2014
- [j10]Michal Nánási, Tomás Vinar, Brona Brejová:
Probabilistic approaches to alignment with tandem repeats. Algorithms Mol. Biol. 9: 3 (2014) - [c28]Vladimír Boza, Brona Brejová, Tomás Vinar:
GAML: Genome Assembly by Maximum Likelihood. WABI 2014: 122-134 - 2013
- [j9]Brona Brejová, Stefan Dobrev, Rastislav Královic, Tomás Vinar:
Efficient routing in carrier-based mobile networks. Theor. Comput. Sci. 509: 113-121 (2013) - [c27]Martina Visnovská, Tomás Vinar, Brona Brejová:
DNA Sequence Segmentation Based on Local Similarity. ITAT 2013: 36-43 - [c26]Martin Kravec, Martin Bobák, Brona Brejová, Tomás Vinar:
Variants of Genes from the Next Generation Sequencing Data. ITAT 2013: 44-51 - [c25]Michal Nánási, Tomás Vinar, Brona Brejová:
Probabilistic Approaches to Alignment with Tandem Repeats. WABI 2013: 287-299 - [e1]Tomás Vinar:
Proceedings of the Conference on Information Technologies - Applications and Theory, Donovaly, Slovakia, September 11-15, 2013. CEUR Workshop Proceedings 1003, CEUR-WS.org 2013 [contents] - 2012
- [c24]Peter Kovác, Brona Brejová, Tomás Vinar:
Aligning sequences with repetitive motifs. ITAT 2012: 41-48 - [i4]Michal Nánási, Tomás Vinar, Brona Brejová:
Sequence Annotation with HMMs: New Problems and Their Complexity. CoRR abs/1210.2587 (2012) - 2011
- [c23]Bronislava Brejová, Stefan Dobrev, Rastislav Královic, Tomás Vinar:
Routing in Carrier-Based Mobile Networks. SIROCCO 2011: 222-233 - [c22]Brona Brejová, Gad M. Landau, Tomás Vinar:
Fast Computation of a String Duplication History under No-Breakpoint-Reuse - (Extended Abstract). SPIRE 2011: 144-155 - [c21]Brona Brejová, Michal Burger, Tomás Vinar:
Automated Segmentation of DNA Sequences with Complex Evolutionary Histories. WABI 2011: 1-13 - [c20]Jakub Kovác, Brona Brejová, Tomás Vinar:
A Practical Algorithm for Ancestral Rearrangement Reconstruction. WABI 2011: 163-174 - 2010
- [j8]Giltae Song, Louxin Zhang, Tomás Vinar, Webb Miller:
CAGE: Combinatorial Analysis of Gene-Cluster Evolution. J. Comput. Biol. 17(9): 1227-1242 (2010) - [j7]Tomás Vinar, Brona Brejová, Giltae Song, Adam C. Siepel:
Reconstructing Histories of Complex Gene Clusters on a Phylogeny. J. Comput. Biol. 17(9): 1267-1279 (2010) - [c19]Michal Nánási, Tomás Vinar, Brona Brejová:
The Highest Expected Reward Decoding for HMMs with Application to Recombination Detection. CPM 2010: 164-176 - [c18]Martina Visnovská, Michal Nánási, Tomás Vinar, Brona Brejová:
Estimating effective DNA database size via compression. ITAT 2010: 63-70 - [i3]Michal Nánási, Tomás Vinar, Brona Brejová:
The Highest Expected Reward Decoding for HMMs with Application to Recombination Detection. CoRR abs/1001.4499 (2010)
2000 – 2009
- 2009
- [j6]Yu Zhang, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller:
Evolutionary History Reconstruction for Mammalian Complex Gene Clusters. J. Comput. Biol. 16(8): 1051-1070 (2009) - [c17]Giltae Song, Louxin Zhang, Tomás Vinar, Webb Miller:
Inferring the Recent Duplication History of a Gene Cluster. RECOMB-CG 2009: 111-125 - [c16]Tomás Vinar, Brona Brejová, Giltae Song, Adam C. Siepel:
Reconstructing Histories of Complex Gene Clusters on a Phylogeny. RECOMB-CG 2009: 150-163 - [c15]Jakub Kovác, Tomás Vinar, Brona Brejová:
Predicting Gene Structures from Multiple RT-PCR Tests. WABI 2009: 181-193 - [i2]Tomás Vinar, Brona Brejová, Giltae Song, Adam C. Siepel:
Bayesian History Reconstruction of Complex Human Gene Clusters on a Phylogeny. CoRR abs/0906.2635 (2009) - 2008
- [c14]Yu Zhang, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller:
Reconstructing the Evolutionary History of Complex Human Gene Clusters. RECOMB 2008: 29-49 - 2007
- [j5]Brona Brejová, Daniel G. Brown, Tomás Vinar:
The most probable annotation problem in HMMs and its application to bioinformatics. J. Comput. Syst. Sci. 73(7): 1060-1077 (2007) - [c13]Xuefeng Cui, Tomás Vinar, Brona Brejová, Dennis E. Shasha, Ming Li:
Homology search for genes. ISMB/ECCB (Supplement of Bioinformatics) 2007: 97-103 - [c12]Rastislav Srámek, Brona Brejová, Tomás Vinar:
On-Line Viterbi Algorithm for Analysis of Long Biological Sequences. WABI 2007: 240-251 - [i1]Rastislav Srámek, Brona Brejová, Tomás Vinar:
On-line Viterbi Algorithm and Its Relationship to Random Walks. CoRR abs/0704.0062 (2007) - 2006
- [c11]Brona Brejová, Daniel G. Brown, Ian M. Harrower, Tomás Vinar:
New Bounds for Motif Finding in Strong Instances. CPM 2006: 94-105 - 2005
- [b1]Tomás Vinar:
Enhancements to Hidden Markov Models for Gene Finding and Other Biological Applications. University of Waterloo, Ontario, Canada, 2005 - [j4]Brona Brejová, Daniel G. Brown, Tomás Vinar:
Vector seeds: An extension to spaced seeds. J. Comput. Syst. Sci. 70(3): 364-380 (2005) - [c10]Brona Brejová, Daniel G. Brown, Ian M. Harrower, Alejandro López-Ortiz, Tomás Vinar:
Sharper Upper and Lower Bounds for an Approximation Scheme for Consensus-Pattern. CPM 2005: 1-10 - [c9]Brona Brejová, Daniel G. Brown, Ming Li, Tomás Vinar:
ExonHunter: a comprehensive approach to gene finding. ISMB (Supplement of Bioinformatics) 2005: 57-65 - 2004
- [j3]Brona Brejová, Daniel G. Brown, Tomás Vinar:
Optimal Spaced Seeds for Homologous Coding Regions. J. Bioinform. Comput. Biol. 1(4): 595-610 (2004) - [j2]Therese Biedl, Brona Brejová, Erik D. Demaine, Angèle M. Hamel, Alejandro López-Ortiz, Tomás Vinar:
Finding hidden independent sets in interval graphs. Theor. Comput. Sci. 310(1-3): 287-307 (2004) - [c8]Brona Brejová, Daniel G. Brown, Tomás Vinar:
The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics. WABI 2004: 426-437 - 2003
- [j1]Therese Biedl, Jonathan F. Buss, Erik D. Demaine, Martin L. Demaine, Mohammad Taghi Hajiaghayi, Tomás Vinar:
Palindrome recognition using a multidimensional tape. Theor. Comput. Sci. 302(1-3): 475-480 (2003) - [c7]Therese Biedl, Brona Brejová, Erik D. Demaine, Angèle M. Hamel, Alejandro López-Ortiz, Tomás Vinar:
Finding Hidden Independent Sets in Interval Graphs. COCOON 2003: 182-191 - [c6]Brona Brejová, Daniel G. Brown, Tomás Vinar:
Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions. CPM 2003: 42-54 - [c5]Brona Brejová, Daniel G. Brown, Tomás Vinar:
Vector Seeds: An Extension to Spaced Seeds Allows Substantial Improvements in Sensitivity and Specifity. WABI 2003: 39-54 - [c4]Brona Brejová, Daniel G. Brown, Tomás Vinar:
Optimal DNA Signal Recognition Models with a Fixed Amount of Intrasignal Dependency. WABI 2003: 78-94 - 2002
- [c3]Therese Biedl, Masud Hasan, Joseph Douglas Horton, Alejandro López-Ortiz, Tomás Vinar:
Searching for the center of a circle. CCCG 2002: 137-141 - [c2]Brona Brejová, Tomás Vinar:
A Better Method for Length Distribution Modeling in HMMs and Its Application to Gene Finding. CPM 2002: 190-202 - 2000
- [c1]Therese C. Biedl, Brona Brejová, Tomás Vinar:
Simplifying Flow Networks. MFCS 2000: 192-201
Coauthor Index
aka: Bronislava Brejová
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 21:23 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
