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2010 – 2019
- 2019
[j16]Marco Moretto, Paolo Sonego
, Ana B. Villaseñor-Altamirano, Kristof Engelen:
First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_. BMC Bioinform. 20(1): 54 (2019)- 2018
- [j15]Francesco Asnicar, Luca Masera, Emanuela Coller, Caterina Gallo, Nadir Sella, Thomas Tolio, Paolo Morettin, Luca Erculiani, Francesca Galante, Stanislau Semeniuta, Giulia Malacarne, Kristof Engelen, Andrea Argentini, Valter Cavecchia, Claudio Moser, Enrico Blanzieri:
NES2RA. Int. J. High Perform. Comput. Appl. 32(3): 380-392 (2018) - 2016
- [j14]Marco Moretto, Paolo Sonego, Nicolas Dierckxsens, Matteo Brilli, Luca Bianco, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Marco Galardini, Chiara Romualdi, Kris Laukens, Julio Collado-Vides, Pieter Meysman, Kristof Engelen:
COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses. Nucleic Acids Res. 44(Database-Issue): 620-623 (2016) - 2015
- [j13]Marco Galardini, Matteo Brilli, Giulia Spini, Matteo Rossi, Bianca Roncaglia, Alessia Bani, Manuela Chiancianesi, Marco Moretto, Kristof Engelen, Giovanni Bacci, Francesco Pini, Emanuele G. Biondi, Marco Bazzicalupo, Alessio Mengoni:
Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome. PLoS Comput. Biol. 11(9) (2015) - [c4]Francesco Asnicar, Luca Erculiani, Francesca Galante, Caterina Gallo, Luca Masera, Paolo Morettin, Nadir Sella, Stanislau Semeniuta, Thomas Tolio, Giulia Malacarne, Kristof Engelen, Andrea Argentini, Valter Cavecchia, Claudio Moser, Enrico Blanzieri:
Discovering Candidates for Gene Network Expansion by Distributed Volunteer Computing. TrustCom/BigDataSE/ISPA (3) 2015: 248-253 - 2014
- [j12]Qiang Fu, Ana Carolina Fierro, Pieter Meysman, Aminael Sánchez-Rodríguez, Klaas Vandepoele, Kathleen Marchal, Kristof Engelen:
MAGIC: access portal to a cross-platform gene expression compendium for maize. Bioinform. 30(9): 1316-1318 (2014) - [j11]Pieter Meysman, Paolo Sonego, Luca Bianco, Qiang Fu, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Veerle Liebens, Jan Michiels, Kris Laukens, Kathleen Marchal, Julio Collado-Vides, Kristof Engelen:
COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia. Nucleic Acids Res. 42(Database-Issue): 649-653 (2014) - 2013
- [j10]Pushpike Jayantha Thilakarathne, Geert Verbeke, Kristof Engelen, Kathleen Marchal, Dan Lin:
Identifying differentially expressed genes in the absence of replication. Int. J. Bioinform. Res. Appl. 9(1): 71-90 (2013) - 2011
- [j9]Hui Zhao, Lore Cloots, Tim Van den Bulcke, Yan Wu, Riet De Smet, Valerie Storms, Pieter Meysman, Kristof Engelen, Kathleen Marchal:
Query-based biclustering of gene expression data using Probabilistic Relational Models. BMC Bioinform. 12(S-1): S37 (2011) - [j8]Pieter Meysman, Thanh Hai Dang, Kris Laukens, Riet De Smet, Yan Wu, Kathleen Marchal, Kristof Engelen:
Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli. Nucleic Acids Res. 39(2): 6 (2011)
2000 – 2009
- 2009
- [j7]Hong Sun, Karen Lemmens, Tim Van den Bulcke, Kristof Engelen, Bart De Moor, Kathleen Marchal:
ViTraM: visualization of transcriptional modules. Bioinform. 25(18): 2450-2451 (2009) - [c3]Pushpike Jayantha Thilakarathne, Geert Verbeke, Kristof Engelen, Kathleen Marchal:
The Use of Mixed Models to Identify Differentially Expressed Genes when a Single Replicate per Biological Condition is Present. BIOCOMP 2009: 186-190 - [c2]Hong Sun, Tim Van den Bulcke, Bart De Moor, Karen Lemmens, Kristof Engelen, Kathleen Marchal:
Layout and Post-Processing of Transcriptional Modules. IJCBS 2009: 116-121 - 2008
- [j6]Ana Carolina Fierro, Raphael Thuret, Kristof Engelen, Gilles Bernot, Kathleen Marchal, Nicolas Pollet:
Evaluation of time profile reconstruction from complex two-color microarray designs. BMC Bioinform. 9 (2008) - 2007
- [j5]Hui Zhao, Kristof Engelen, Bart De Moor, Kathleen Marchal:
CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data. Bioinform. 23(13): 1700-1701 (2007) - [j4]Katrijn Van Deun, Kathleen Marchal, Willem J. Heiser, Kristof Engelen, Iven Van Mechelen:
Joint mapping of genes and conditions via multidimensional unfolding analysis. BMC Bioinform. 8 (2007) - 2006
- [j3]Kristof Engelen, Bart Naudts, Bart De Moor, Kathleen Marchal:
A calibration method for estimating absolute expression levels from microarray data. Bioinform. 22(10): 1251-1258 (2006) - 2005
- [c1]Tijl De Bie, Patrick Monsieurs, Kristof Engelen, Bart De Moor, Nello Cristianini, Kathleen Marchal:
Discovering Transcriptional Modules from Motif, Chip-Chip and Microarray Data. Pacific Symposium on Biocomputing 2005 - 2003
- [j2]Kristof Engelen, Bert Coessens, Kathleen Marchal, Bart De Moor:
MARAN: Normalizing Micro-array Data. Bioinform. 19(7): 893-894 (2003) - [j1]Bert Coessens, Gert Thijs, Stein Aerts, Kathleen Marchal, Frank De Smet, Kristof Engelen, Patrick Glenisson, Yves Moreau, Janick Mathys, Bart De Moor:
INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis. Nucleic Acids Res. 31(13): 3468-3470 (2003)
Coauthor Index
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