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2020 – today
- 2021
[j22]Da Kuang
, Rebecca Truty, Jochen Weile, Britt Johnson, Keith Nykamp, Carlos Araya, Robert L. Nussbaum, Frederick P. Roth:
Prioritizing genes for systematic variant effect mapping. Bioinform. 36(22-23): 5448-5455 (2021)- [j21]Da Kuang, Jochen Weile, Nishka Kishore, Maria Nguyen, Alan F. Rubin, Stanley Fields, Douglas M. Fowler, Frederick P. Roth:
MaveRegistry: a collaboration platform for multiplexed assays of variant effect. Bioinform. 37(19): 3382-3383 (2021) - 2020
- [j20]Da Kuang, Jochen Weile, Roujia Li, Tom W. Ouellette, Jarry A. Barber, Frederick P. Roth:
MaveQuest: a web resource for planning experimental tests of human variant effects. Bioinform. 36(12): 3938-3940 (2020) - [j19]Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoît Charloteaux, Dong-Sic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood:
A reference map of the human binary protein interactome. Nat. 580(7803): 402-408 (2020)
2010 – 2019
- 2019
- [j18]Yingzhou Wu, Jochen Weile, Atina G. Coté, Song Sun, Jennifer J. Knapp, Marta Verby, Frederick P. Roth:
A web application and service for imputing and visualizing missense variant effect maps. Bioinform. 35(17): 3191-3193 (2019) - 2017
- [j17]Matthew J. Betts, Oliver Wichmann, Mathias Utz, Timon Andre, Evangelia Petsalaki, Pablo Minguez, Luca Parca, Frederick P. Roth, Anne-Claude Gavin, Peer Bork, Robert B. Russell:
Systematic identification of phosphorylation-mediated protein interaction switches. PLoS Comput. Biol. 13(3) (2017) - 2015
- [j16]Evangelia Petsalaki, Andreas O. Helbig, Anjali Gopal, Adrian Pasculescu, Frederick P. Roth, Tony Pawson:
SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets. Nucleic Acids Res. 43(Webserver-Issue): W276-W282 (2015) - [j15]Fan Yang, Evangelia Petsalaki, Thomas Rolland, David E. Hill, Marc Vidal, Frederick P. Roth:
Protein Domain-Level Landscape of Cancer-Type-Specific Somatic Mutations. PLoS Comput. Biol. 11(3) (2015) - 2014
- [j14]Kaan Yilancioglu, Zohar B. Weinstein, Cem Meydan, Azat Akhmetov, Isil Toprak, Arda Durmaz, Ivan Iossifov, Hilal Kazan, Frederick P. Roth, Murat Cokol:
Target-Independent Prediction of Drug Synergies Using Only Drug Lipophilicity. J. Chem. Inf. Model. 54(8): 2286-2293 (2014) - 2013
- [j13]Theodore R. Pak, Frederick P. Roth:
ChromoZoom: a flexible, fluid, web-based genome browser. Bioinform. 29(3): 384-386 (2013) - 2012
- [j12]Natali Gulbahce, Han Yan, Amélie Dricot, Megha Padi, Danielle Byrdsong, Rachel Franchi, Deok-Sun Lee, Orit Rozenblatt-Rosen, Jessica Cara Mar, Michael A. Calderwood, Amy Baldwin, Bo Zhao, Balaji Santhanam, Pascal Braun, Nicolas Simonis, Kyung-Won Huh, Karin Hellner, Miranda Grace, Alyce Chen, Renee Rubio, Jarrod A. Marto, Nicholas A. Christakis, Elliott Kieff, Frederick P. Roth, Jennifer Roecklein-Canfield, James A. DeCaprio, Michael E. Cusick, John Quackenbush, David E. Hill, Karl Münger, Marc Vidal, Albert-László Barabási:
Viral Perturbations of Host Networks Reflect Disease Etiology. PLoS Comput. Biol. 8(6) (2012) - [c3]Oliver Stegle, Frederick P. Roth, Quaid Morris, Jennifer Listgarten:
Session introduction. Pacific Symposium on Biocomputing 2012: 323-326 - 2010
- [j11]John E. Beaver, Murat Tasan, Francis D. Gibbons, Weidong Tian, Timothy R. Hughes, Frederick P. Roth:
FuncBase : a resource for quantitative gene function annotation. Bioinform. 26(14): 1806-1807 (2010) - [j10]Rahul C. Deo, Luke Hunter, Gregory D. Lewis, Guillaume Pare, Ramachandran S. Vasan, Daniel Chasman, Thomas J. Wang, Robert E. Gerszten, Frederick P. Roth:
Interpreting Metabolomic Profiles using Unbiased Pathway Models. PLoS Comput. Biol. 6(2) (2010)
2000 – 2009
- 2009
- [j9]Gabriel F. Berriz, John E. Beaver, Can Cenik, Murat Tasan, Frederick P. Roth:
Next generation software for functional trend analysis. Bioinform. 25(22): 3043-3044 (2009) - [r1]Lan V. Zhang, Frederick P. Roth:
Biomolecular Network Structure and Function. Encyclopedia of Complexity and Systems Science 2009: 570-589 - 2008
- [j8]Gabriel F. Berriz, Frederick P. Roth:
The Synergizer service for translating gene, protein and other biological identifiers. Bioinform. 24(19): 2272-2273 (2008) - [j7]Justin Klekota, Frederick P. Roth:
Chemical substructures that enrich for biological activity. Bioinform. 24(21): 2518-2525 (2008) - 2006
- [j6]Justin Klekota, Frederick P. Roth, Stuart L. Schreiber:
Query Chem: a Google-powered web search combining text and chemical structures. Bioinform. 22(13): 1670-1673 (2006) - [j5]Justin Klekota, Erik Brauner, Frederick P. Roth, Stuart L. Schreiber:
Using High-Throughput Screening Data To Discriminate Compounds with Single-Target Effects from Those with Side Effects. J. Chem. Inf. Model. 46(4): 1549-1562 (2006) - [c2]Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader:
Probabilistic Paths for Protein Complex Inference. Systems Biology and Computational Proteomics 2006: 14-28 - 2004
- [j4]Yonatan H. Grad, Frederick P. Roth, Marc S. Halfon, George M. Church:
Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura. Bioinform. 20(16): 2738-2750 (2004) - [j3]Lan V. Zhang, Sharyl L. Wong, Oliver D. King, Frederick P. Roth:
Predicting co-complexed protein pairs using genomic and proteomic data integration. BMC Bioinform. 5: 38 (2004) - 2003
- [j2]Gabriel F. Berriz, James V. White, Oliver D. King, Frederick P. Roth:
GoFish finds genes with combinations of Gene Ontology attributes. Bioinform. 19(6): 788-789 (2003) - [j1]Gabriel F. Berriz, Oliver D. King, Barbara Bryant, Chris Sander, Frederick P. Roth:
Characterizing gene sets with FuncAssociate. Bioinform. 19(18): 2502-2504 (2003) - [c1]Oliver D. King, Jeffrey C. Lee, Aimée M. Dudley, Daniel M. Janse, George M. Church, Frederick P. Roth:
Predicting phenotype from patterns of annotation. ISMB (Supplement of Bioinformatics) 2003: 183-189
Coauthor Index
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