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2020 – today
- 2024
[j17]Miguel Reboiro-Jato, Daniel Pérez-Rodríguez, Miguel José Da Silva, David Vila-Fernández, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández:
SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines. BMC Bioinform. 25(1): 200 (2024)- [j16]Kale Weichman
, Kyle G. Miller, B. Malaca, Warren B. Mori, J. R. Pierce, D. Ramsey, Jorge Vieira, Marija Vranic, John P. Palastro:
Analytic pulse technique for computational electromagnetics. Comput. Phys. Commun. 298: 109096 (2024) - [j15]Daniel Glez-Peña, Hugo López-Fernández, Pedro Duque, Cristina P. Vieira, Jorge Vieira:
Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information. J. Integr. Bioinform. 21(2) (2024) - [j14]Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira:
Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites. J. Integr. Bioinform. 21(2) (2024) - 2023
- [j13]Miguel L. Pardal, A. Sainte-Marie, A. Reboul-Salze, Ricardo A. Fonseca, Jorge Vieira:
RaDiO: An efficient spatiotemporal radiation diagnostic for particle-in-cell codes. Comput. Phys. Commun. 285: 108634 (2023) - [j12]André D. Sousa, Sara Rocha, Jorge Vieira, Miguel Reboiro-Jato, Hugo López-Fernández, Cristina P. Vieira:
On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3. J. Integr. Bioinform. 20(2) (2023) - [c17]Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira:
Auto-phylo: A Pipeline Maker for Phylogenetic Studies. PACBB 2023: 24-33 - 2022
- [j11]José Tito Mendonça, Camilla Willim, Jorge Vieira:
Twisted Waves near a Plasma Cutoff. Symmetry 14(1): 146 (2022) - [j10]Edda Gschwendtner, Konstantin Lotov, Patric Muggli, Matthew Wing, Riccardo Agnello, Claudia Christina Ahdida, Maria Carolina Amoedo Goncalves, Yanis Andrebe, Oznur Apsimon, Robert Apsimon, Jordan Matias Arnesano, Anna-Maria Bachmann, Diego Barrientos, Fabian Batsch, Vittorio Bencini, Michele Bergamaschi, Patrick Blanchard, Philip Nicholas Burrows, Birger Buttenschön, Allen Caldwell, James Chappell, Eric Chevallay, Moses Chung, David Andrew Cooke, Heiko Damerau, Can Davut, Gábor Demeter, Amos Christopher Dexter, Steffen Doebert, Francesa Ann Elverson, John Farmer, Ambrogio Fasoli, Valentin Fedosseev, Ricardo Fonseca, Ivo Furno, Spencer Gessner, Aleksandr Gorn, Eduardo Granados, Marcel Granetzny, Tim Graubner, Olaf Grulke, Eloise Daria Guran, Vasyl Hafych, Anthony Hartin, James Henderson, Mathias Hüther, Miklos Kedves, Fearghus Keeble, Vadim Khudiakov, Seong-Yeol Kim, Florian Kraus, Michel Krupa, Thibaut Lefevre, Linbo Liang, Shengli Liu, Nelson Lopes, Miguel Martinez Calderon, Stefano Mazzoni, David Medina Godoy, Joshua Moody, Kookjin Moon, Pablo Israel Morales Guzmán, Mariana Moreira, Tatiana Nechaeva, Elzbieta Nowak, Collette Pakuza, Harsha Panuganti, Ans Pardons, Kevin Pepitone, Aravinda Perera, Jan Pucek, Alexander Pukhov, Rebecca Louise Ramjiawan, Stephane Rey, Adam Scaachi, Oliver Schmitz, Eugenio Senes, J. Fernando A. da Silva, Luis Silva, Christine Stollberg, Alban Sublet, Catherine Swain, Athanasios Topaloudis, Nuno Torrado, Petr Tuev, Marlene Turner, Francesco Velotti, Livio Verra, Victor Verzilov, Jorge Vieira, Helmut Vincke, Martin Weidl, Carsten P. Welsch, Manfred Wendt, Peerawan Wiwattananon, Joseph Wolfenden, Benjamin Woolley, Samuel Wyler, Guoxing Xia, Vlada Yarygova, Michael Zepp, Giovanni Zevi Della Porta:
The AWAKE Run 2 Programme and Beyond. Symmetry 14(8): 1680 (2022) - [j9]Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira:
SEDA: A Desktop Tool Suite for FASTA Files Processing. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1850-1860 (2022) - [c16]Miguel Reboiro-Jato, Jorge Vieira, Sara Rocha, André D. Sousa, Hugo López-Fernández, Cristina P. Vieira:
EvoPPI 2: A Web and Local Platform for the Comparison of Protein-Protein Interaction Data from Multiple Sources from the Same and Distinct Species. PACBB 2022: 101-110 - 2021
- [c15]Hugo López-Fernández, Pedro Ferreira, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira:
The pegi3s Bioinformatics Docker Images Project. PACBB 2021: 31-40 - 2020
- [c14]Hugo López-Fernández, Cristina P. Vieira, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Jorge Vieira:
Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen. PACBB 2020: 42-50
2010 – 2019
- 2019
- [c13]Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira:
Inferring Positive Selection in Large Viral Datasets. PACBB 2019: 61-69 - 2018
- [c12]Hugo López-Fernández, Pedro Duque, Sílvia Henriques, Noé Vázquez, Florentino Fdez-Riverola, Cristina P. Vieira, Miguel Reboiro-Jato, Jorge Vieira:
A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees. PACBB 2018: 88-96 - [c11]Noé Vázquez, Sara Rocha, Hugo López-Fernández, André Torres, Rui Camacho, Florentino Fdez-Riverola, Jorge Vieira, Cristina P. Vieira, Miguel Reboiro-Jato:
EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species. PACBB 2018: 149-156 - 2017
- [c10]Noé Vázquez, Cristina P. Vieira, Bárbara S. R. Amorim, André Torres, Hugo López-Fernández, Florentino Fdez-Riverola, José L. R. Sousa, Miguel Reboiro-Jato, Jorge Vieira:
Automated Collection and Sharing of Adaptive Amino Acid Changes Data. PACBB 2017: 18-25 - 2016
- [j8]Peicheng Yu, Xinlu Xu, Asher Davidson, Adam Tableman, Thamine Dalichaouch, Fei Li, Michael D. Meyers, Weiming An, Frank S. Tsung, Viktor K. Decyk, Frederico Fiuza, Jorge Vieira, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori:
Enabling Lorentz boosted frame particle-in-cell simulations of laser wakefield acceleration in quasi-3D geometry. J. Comput. Phys. 316: 747-759 (2016) - 2015
- [j7]Peicheng Yu, Xinlu Xu, Viktor K. Decyk, Frederico Fiuza, Jorge Vieira, Frank S. Tsung, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori:
Elimination of the numerical Cerenkov instability for spectral EM-PIC codes. Comput. Phys. Commun. 192: 32-47 (2015) - [j6]Peicheng Yu, Xinlu Xu, Adam Tableman, Viktor K. Decyk, Frank S. Tsung, Frederico Fiuza, Asher Davidson, Jorge Vieira, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori:
Mitigation of numerical Cerenkov radiation and instability using a hybrid finite difference-FFT Maxwell solver and a local charge conserving current deposit. Comput. Phys. Commun. 197: 144-152 (2015) - [j5]Adam Davidson, Adam Tableman, Weiming An, Frank S. Tsung, Wei Lu, Jorge Vieira, Ricardo A. Fonseca, Luís O. Silva, Warren B. Mori:
Implementation of a hybrid particle code with a PIC description in r-z and a gridless description in ϕ into OSIRIS. J. Comput. Phys. 281: 1063-1077 (2015) - [c9]Alexandra Ribeiro, Jorge Vieira, Vitor Sousa, Alberto Cardoso:
Demonstration of GIS web-based platform for experimentation supported by geosensors in a WSN. exp.at 2015: 137-138 - 2014
- [j4]Peicheng Yu, Xinlu Xu, Viktor K. Decyk, Weiming An, Jorge Vieira, Frank S. Tsung, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori:
Modeling of laser wakefield acceleration in Lorentz boosted frame using EM-PIC code with spectral solver. J. Comput. Phys. 266: 124-138 (2014) - 2013
- [j3]Xinlu Xu, Peicheng Yu, Samuel F. Martins, Frank S. Tsung, Viktor K. Decyk, Jorge Vieira, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori:
Numerical instability due to relativistic plasma drift in EM-PIC simulations. Comput. Phys. Commun. 184(11): 2503-2514 (2013) - [j2]Tiago Loureiro, Rui Camacho, Jorge Vieira, Nuno A. Fonseca:
Improving the performance of Transposable Elements detection tools. J. Integr. Bioinform. 10(3) (2013) - [c8]Tiago Loureiro, Rui Camacho, Jorge Vieira, Nuno A. Fonseca:
Boosting the Detection of Transposable Elements Using Machine Learning. PACBB 2013: 85-91 - 2012
- [j1]David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Cristina P. Vieira, Nuno A. Fonseca, Jorge Vieira:
ADOPS - Automatic Detection Of Positively Selected Sites. J. Integr. Bioinform. 9(3) (2012) - [c7]David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Nuno A. Fonseca, Jorge Vieira:
On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites. PACBB 2012: 225-229
2000 – 2009
- 2009
- [c6]Nuno A. Fonseca, Vítor Santos Costa, Rui Camacho, Cristina P. Vieira, Jorge Vieira:
Partitional Clustering of Protein Sequences - An Inductive Logic Programming Approach. IWANN (2) 2009: 1001-1004 - 2008
- [c5]Jorge Vieira, Marco Vieira, Marco Costa, Henrique Madeira:
Redundant Array of Inexpensive Nodes for DWS. DASFAA 2008: 580-587 - [c4]Jorge Vieira, Marco Vieira, Marco Costa, Henrique Madeira:
RAIN: Always on Data Warehousing. DASFAA 2008: 678-681 - [c3]Raquel Almeida, Jorge Vieira, Marco Vieira, Henrique Madeira, Jorge Bernardino:
Efficient Data Distribution for DWS. DaWaK 2008: 75-86 - 2005
- [c2]Jorge Vieira, Jorge Bernardino, Henrique Madeira:
Efficient Compression of Text Attributes of Data Warehouse Dimensions. DaWaK 2005: 356-367 - 2003
- [c1]Marco Costa, Jorge Vieira, Jorge Bernardino, Pedro Furtado, Henrique Madeira:
A middle layer for distributed data warehouses using the DWS-AQA technique. JISBD 2003: 775-778
Coauthor Index
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