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2020 – today
- 2024
[j17]Robert F. Lario
, Richard Soley, Stephen White, John Butler, Guilherme Del Fiol, Karen Eilbeck, Stanley M. Huff, Kensaku Kawamoto:
The Business Process Management for Healthcare (BPM+ Health) Consortium: motivation, methodology, and deliverables for enabling clinical knowledge interoperability (CKI). J. Am. Medical Informatics Assoc. 31(4): 797-808 (2024)- 2023
- [j16]Robert F. Lario, Kensaku Kawamoto, Davide Sottara, Karen Eilbeck, Stanley M. Huff, Guilherme Del Fiol, Richard Soley, Blackford Middleton:
A method for structuring complex clinical knowledge and its representational formalisms to support composite knowledge interoperability in healthcare. J. Biomed. Informatics 137: 104251 (2023) - [c18]Thomas Engelsma, Carolin Anders, Susan J. Oudbier, Karen Eilbeck, Petra Knaup, Linda W. Peute, Matthias Ganzinger:
Proposing a Novel Hybrid Short-Term Exchange Program in Biomedical and Health Informatics Education. MIE 2023: 498-499 - 2022
- [c17]Michael T. Watkins, Wendy Kohlmann, Therese Berry, Neetha Sama, Cathryn Koptiuch, Shawn Rynearson, Karen Eilbeck:
LocalVar: a local variant collection manager to asynchronously detect synonyms, HGVS expression changes, and variant interpretation changes from ClinVar. AMIA 2022 - 2020
- [j15]Thomas Desvignes, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese, Bastian Fromm, Jason Sydes, Ernesto Aparicio-Puerta, Víctor Barrera, Roderic Espín, Florian Thibord, Xavier Bofill-De Ros, Eric Londin, Aristeidis G. Telonis, Elisa Ficarra, Marc R. Friedländer, John H. Postlethwait, Isidore Rigoutsos, Michael Hackenberg, Ioannis S. Vlachos, Marc K. Halushka, Lorena Pantano:
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. Bioinform. 36(3): 698-703 (2020) - [c16]Robert F. Lario, Steve Hasely, Stephen White, Karen Eilbeck, Richard Soley, Stan Huff, Kensaku Kawamoto:
Utilization of BPM+ Health for the Representation of Clinical Knowledge: A Framework for the Expression and Assessment of Clinical Practice Guidelines (CPG) Utilizing Existing and Emerging Object Management Group (OMG) Standards. AMIA 2020
2010 – 2019
- 2019
- [c15]Amber Kiser, Devin Horton, Karen Eilbeck, Samir E. AbdelRahman:
Continuous Predictive Modelling for Sepsis, Organ Failure, and In-hospital Mortality in the Intensive Care Unit. AMIA 2019 - [c14]Michael T. Watkins, Shawn Rynearson, Alex Henrie, Karen Eilbeck:
Implementing the VMC specification to reduce ambiguity in genomic variant representation. AMIA 2019 - 2018
- [j14]Steven Flygare, Edgar Javier Hernandez, Lon Phan, Barry Moore, Man Li, Anthony Fejes, Hao Hu, Karen Eilbeck, Chad D. Huff, Lynn Jorde, Martin G. Reese, Mark Yandell:
The VAAST Variant Prioritizer (VVP): ultrafast, easy to use whole genome variant prioritization tool. BMC Bioinform. 19(1): 57:1-57:13 (2018) - 2017
- [c13]Jingshan Huang, Dejing Dou, Ming Tan, Glen M. Borchert, Karen Eilbeck, Alan Ruttenberg, Ping Yang:
Semantics-oriented data science and computational life sciences: Innovative application of semantic technologies in microRNA and lncRNA research. ICCABS 2017: 1 - 2016
- [j13]Jingshan Huang, Karen Eilbeck, Barry Smith, Judith A. Blake, Dejing Dou, Weili Huang, Darren A. Natale, Alan Ruttenberg, Jun Huan, Michael T. Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Harrison J. Strachan, Yongqun He, Shaojie Zhang, Xiaowei Wang, Zixing Liu, Glen M. Borchert, Ming Tan:
The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology. J. Biomed. Semant. 7: 24 (2016) - [j12]Jingshan Huang, Fernando Gutierrez, Harrison J. Strachan, Dejing Dou, Weili Huang, Barry Smith, Judith A. Blake, Karen Eilbeck, Darren A. Natale, Yu Lin, Bin Wu, Nisansa de Silva, Xiaowei Wang, Zixing Liu, Glen M. Borchert, Ming Tan, Alan Ruttenberg:
OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data. J. Biomed. Semant. 7: 25 (2016) - [j11]Jingshan Huang, Karen Eilbeck, Barry Smith, Judith A. Blake, Dejing Dou, Weili Huang, Darren A. Natale, Alan Ruttenberg, Jun Huan, Michael T. Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Harrison J. Strachan, Nisansa de Silva, Mohan Vamsi Kasukurthi, Vikash Kumar Jha, Yongqun He, Shaojie Zhang, Xiaowei Wang, Zixing Liu, Glen M. Borchert, Ming Tan:
The development of non-coding RNA ontology. Int. J. Data Min. Bioinform. 15(3): 214-232 (2016) - [j10]Ayesha Aziz, Kensaku Kawamoto, Karen Eilbeck, Marc S. Williams, Robert R. Freimuth, Mark A. Hoffman, Luke V. Rasmussen, Casey Lynnette Overby, Brian H. Shirts, James M. Hoffman, Brandon M. Welch:
The genomic CDS sandbox: An assessment among domain experts. J. Biomed. Informatics 60: 84-94 (2016) - 2015
- [j9]Fiona Cunningham, Barry Moore, Nicole Ruiz-Schultz, Graham R. S. Ritchie, Karen Eilbeck:
Improving the Sequence Ontology terminology for genomic variant annotation. J. Biomed. Semant. 6: 32 (2015) - [j8]Jeffrey Duncan, Scott P. Narus, Stephen Clyde, Karen Eilbeck, Sidney N. Thornton, Catherine J. Staes:
Birth of identity: understanding changes to birth certificates and their value for identity resolution. J. Am. Medical Informatics Assoc. 22(e1): e120-e129 (2015) - [c12]Jingshan Huang, Karen Eilbeck, Judith A. Blake, Dejing Dou, Darren A. Natale, Alan Ruttenberg, Barry Smith, Michael T. Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Yongqun He, Shaojie Zhang, Xiaowei Wang, He Zhang, Zixing Liu, Ming Tan:
A domain ontology for the Non-Coding RNA field. BIBM 2015: 621-624 - [c11]Jingshan Huang, Fernando Gutierrez, Dejing Dou, Judith A. Blake, Karen Eilbeck, Darren A. Natale, Barry Smith, Yu Lin, Xiaowei Wang, Zixing Liu, Ming Tan, Alan Ruttenberg:
A semantic approach for knowledge capture of MIcroRNA-Target gene interactions. BIBM 2015: 975-982 - 2014
- [j7]Brandon M. Welch, Karen Eilbeck, Guilherme Del Fiol, Laurence J. Meyer, Kensaku Kawamoto:
Technical desiderata for the integration of genomic data with clinical decision support. J. Biomed. Informatics 51: 3-7 (2014) - [c10]Karen Eilbeck, Julie Lipstein, Sunanda R. McGarvey, Catherine J. Staes:
Evaluation of need for ontologies to manage domain content for the Reportable Conditions Knowledge Management System. AMIA 2014 - [c9]Brandon M. Welch, Salvador Loya, Karen Eilbeck, Kensaku Kawamoto:
Clinical Decision Support for Whole Genome Sequence Information Leveraging a Service-Oriented Architecture: a Prototype. AMIA 2014 - 2013
- [c8]Jeffrey Duncan, Karen Eilbeck, Catherine J. Staes, Scott P. Narus, Stephen Clyde:
Using KaOS Ontologies to Model Policy Requirements for a Statewide Master Person Index. AMIA 2013 - [c7]Karen Eilbeck, Jason R. Jacobs, Catherine J. Staes:
Optimize Querying of LOINC® with an Ontology: Give Me the Chlamydia Tests the Epidemiologists Want Me to Use! HICSS 2013: 2398-2407 - [c6]Karen Eilbeck, Jason R. Jacobs, Sunanda R. McGarvey, Cynthia Vinion, Catherine J. Staes:
Exploring the use of ontologies and automated reasoning to manage selection of reportable condition lab tests from LOINC. ICBO 2013: 12-15 - 2012
- [c5]Barry Moore, Shawn Rynearson, Fiona Cunningham, Graham R. S. Ritchie, Karen Eilbeck:
Using GVF for Clinical Annotation of Personal Genomes. AIMM 2012 - [c4]Michael Bada, Karen Eilbeck:
Efforts toward a More Consistent and Interoperable Sequence Ontology. ICBO 2012 - 2011
- [j6]Robert Hoehndorf, Colin R. Batchelor, Thomas Bittner, Michel Dumontier, Karen Eilbeck, Rob Knight, Chris Mungall, Jane S. Richardson, Jesse Stombaugh, Eric Westhof, Craig L. Zirbel, Neocles Leontis:
The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data. Appl. Ontology 6(1): 53-89 (2011) - [j5]Christopher J. Mungall, Colin R. Batchelor, Karen Eilbeck:
Evolution of the Sequence Ontology terms and relationships. J. Biomed. Informatics 44(1): 87-93 (2011) - 2010
- [j4]Barry Moore, Guozhen Fan, Karen Eilbeck:
SOBA: sequence ontology bioinformatics analysis. Nucleic Acids Res. 38(Web-Server-Issue): 161-164 (2010)
2000 – 2009
- 2009
- [j3]Karen Eilbeck, Barry Moore, Carson Holt, Mark Yandell:
Quantitative measures for the management and comparison of annotated genomes. BMC Bioinform. 10 (2009) - 2008
- [j2]Gabrielle A. Reeves, Karen Eilbeck, Michele Magrane, Claire O'Donovan, Luisa Montecchi-Palazzi, Midori A. Harris, Sandra E. Orchard, Rafael C. Jiménez, Andreas Prlic, Tim J. P. Hubbard, Henning Hermjakob, Janet M. Thornton:
The Protein Feature Ontology: a tool for the unification of protein feature annotations. Bioinform. 24(23): 2767-2772 (2008) - 2001
- [c3]Mike Cornell, Norman W. Paton, Shengli Wu, Carole A. Goble, Crispin J. Miller, Paul Kirby, Karen Eilbeck, Andy Brass, Andrew Hayes, Stephen G. Oliver:
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data. BIBE 2001: 15-22 - 2000
- [j1]Norman W. Paton, Shakeel A. Khan, Andrew Hayes, Fouzia Moussouni, Andy Brass, Karen Eilbeck, Carole A. Goble, Simon J. Hubbard, Stephen G. Oliver:
Conceptual modelling of genomic information. Bioinform. 16(6): 548-557 (2000)
1990 – 1999
- 1999
- [c2]Wojciech Basalaj, Karen Eilbeck:
Straight-Line Drawings of Protein Interactions. GD 1999: 259-266 - [c1]Karen Eilbeck, Andy Brass, Norman W. Paton, Charlie Hodgman:
INTERACT: An Object Oriented Protein-Protein Interaction Database. ISMB 1999: 87-94
Coauthor Index
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