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ORCIDJaewoon Jung
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2020 – today
- 2023
[j10]Jaewoon Jung
, Chigusa Kobayashi, Yuji Sugita:
Acceleration of generalized replica exchange with solute tempering simulations of large biological systems on massively parallel supercomputer. J. Comput. Chem. 44(20): 1740-1749 (2023)- 2022
- [j9]Cheng Tan, Jaewoon Jung, Chigusa Kobayashi, Diego Ugarte La Torre, Shoji Takada, Yuji Sugita:
Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations. PLoS Comput. Biol. 18(4) (2022) - 2021
- [j8]Jaewoon Jung, Chigusa Kobayashi, Kento Kasahara, Cheng Tan, Akiyoshi Kuroda, Kazuo Minami, Shigeru Ishiduki, Tatsuo Nishiki, Hikaru Inoue, Yutaka Ishikawa, Michael Feig, Yuji Sugita:
New parallel computing algorithm of molecular dynamics for extremely huge scale biological systems. J. Comput. Chem. 42(4): 231-241 (2021)
2010 – 2019
- 2019
- [j7]Jaewoon Jung, Wataru Nishima, Marcus Daniels, Gavin Bascom, Chigusa Kobayashi, Adetokunbo Adedoyin, Michael E. Wall, Anna Lappala, Dominic Phillips, William Fischer, Chang-Shung Tung, Tamar Schlick, Yuji Sugita, Karissa Y. Sanbonmatsu:
Scaling molecular dynamics beyond 100, 000 processor cores for large-scale biophysical simulations. J. Comput. Chem. 40(21): 1919-1930 (2019) - 2017
- [j6]Jaewoon Jung, Yuji Sugita:
Multiple program/multiple data molecular dynamics method with multiple time step integrator for large biological systems. J. Comput. Chem. 38(16): 1410-1418 (2017) - [j5]Chigusa Kobayashi, Jaewoon Jung, Yasuhiro Matsunaga, Takaharu Mori, Tadashi Ando, Koichi Tamura, Motoshi Kamiya, Yuji Sugita:
GENESIS 1.1: A hybrid-parallel molecular dynamics simulator with enhanced sampling algorithms on multiple computational platforms. J. Comput. Chem. 38(25): 2193-2206 (2017) - 2016
- [j4]Jaewoon Jung, Chigusa Kobayashi, Toshiyuki Imamura, Yuji Sugita:
Parallel implementation of 3D FFT with volumetric decomposition schemes for efficient molecular dynamics simulations. Comput. Phys. Commun. 200: 57-65 (2016) - 2014
- [j3]Jaewoon Jung, Takaharu Mori, Yuji Sugita:
Midpoint cell method for hybrid (MPI+OpenMP) parallelization of molecular dynamics simulations. J. Comput. Chem. 35(14): 1064-1072 (2014) - 2013
- [j2]Jaewoon Jung, Takaharu Mori, Yuji Sugita:
Efficient lookup table using a linear function of inverse distance squared. J. Comput. Chem. 34(28): 2412-2420 (2013) - 2011
- [j1]Suyong Re, Takashi Imai, Jaewoon Jung, Seiichiro Ten-no, Yuji Sugita:
Geometrically associative yet electronically dissociative character in the transition state of enzymatic reversible phosphorylation. J. Comput. Chem. 32(2): 260-270 (2011)
Coauthor Index
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