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2020 – today
- 2024
[j18]Ananthan Nambiar, Chao Pan, Vishal Rana, Mahdi Cheraghchi, João Ribeiro, Sergei Maslov, Olgica Milenkovic:
Semi-quantitative group testing for efficient and accurate qPCR screening of pathogens with a wide range of loads. BMC Bioinform. 25(1): 195 (2024)- 2023
- [j17]Ananthan Nambiar
, Simon Liu, Maeve Heflin, John Malcolm Forsyth, Sergei Maslov, Mark Hopkins, Anna M. Ritz:
Transformer Neural Networks for Protein Family and Interaction Prediction Tasks. J. Comput. Biol. 30(1): 95-111 (2023) - [j16]Tong Wang, Xu-Wen Wang, Kathleen A. Lee-Sarwar, Augusto A. Litonjua, Scott T. Weiss, Yizhou Sun, Sergei Maslov, Yang-Yu Liu:
Predicting metabolomic profiles from microbial composition through neural ordinary differential equations. Nat. Mac. Intell. 5(3): 284-293 (2023) - [j15]Ananthan Nambiar, Veronika Dubinkina, Simon Liu, Sergei Maslov:
FUN-PROSE: A deep learning approach to predict condition-specific gene expression in fungi. PLoS Comput. Biol. 19(11) (2023) - [i4]Anantham Nambiar, Chao Pan, Vishal Rana, Mahdi Cheraghchi, João Ribeiro, Sergei Maslov, Olgica Milenkovic:
Semi-Quantitative Group Testing for Efficient and Accurate qPCR Screening of Pathogens with a Wide Range of Loads. CoRR abs/2307.16352 (2023) - 2022
- [j14]Fangfang Xia, Jonathan E. Allen, Prasanna Balaprakash, Thomas S. Brettin, Cristina Garcia-Cardona, Austin Clyde, Judith D. Cohn, James H. Doroshow, Xiaotian Duan, Veronika Dubinkina, Yvonne A. Evrard, Ya Ju Fan, Jason Gans, Stewart He, Pinyi Lu, Sergei Maslov, Alexander Partin, Maulik Shukla, Eric A. Stahlberg, Justin M. Wozniak, Hyun Seung Yoo, George F. Zaki, Yitan Zhu, Rick Stevens:
A cross-study analysis of drug response prediction in cancer cell lines. Briefings Bioinform. 23(1) (2022) - [j13]Yulia Fridman, Zihan Wang, Sergei Maslov, Akshit Goyal:
Fine-scale diversity of microbial communities due to satellite niches in boom and bust environments. PLoS Comput. Biol. 18(12): 1010244 (2022) - 2020
- [j12]Chen Liao, Tong Wang, Sergei Maslov, João B. Xavier:
Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence. PLoS Comput. Biol. 16(8) (2020) - [c2]Ananthan Nambiar, Maeve Heflin, Simon Liu, Sergei Maslov, Mark Hopkins, Anna M. Ritz:
Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks. BCB 2020: 5:1-5:8
2010 – 2019
- 2019
- [j11]Tong Wang, Akshit Goyal, Veronika Dubinkina, Sergei Maslov:
Evidence for a multi-level trophic organization of the human gut microbiome. PLoS Comput. Biol. 15(12) (2019) - [i3]Veronika Dubinkina, Yulia Fridman, Parth Pratim Pandey, Sergei Maslov:
Multistability and regime shifts in microbial communities explained by competition for essential nutrients. CoRR abs/1907.01380 (2019) - 2018
- [j10]Fangfang Xia, Maulik Shukla, Thomas S. Brettin, Cristina Garcia-Cardona, Judith D. Cohn, Jonathan E. Allen, Sergei Maslov, Susan L. Holbeck, James H. Doroshow, Yvonne A. Evrard, Eric A. Stahlberg, Rick L. Stevens:
Predicting tumor cell line response to drug pairs with deep learning. BMC Bioinform. 19-S(18): 71-79 (2018) - 2017
- [i2]Akshit Goyal, Veronika Dubinkina, Sergei Maslov:
Microbial community structure predicted by the stable marriage problem. CoRR abs/1712.06042 (2017) - 2016
- [j9]Daifeng Wang, Fei He, Sergei Maslov, Mark Gerstein:
DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks. PLoS Comput. Biol. 12(10) (2016) - 2015
- [j8]Sergei Maslov, Kim Sneppen:
Diversity Waves in Collapse-Driven Population Dynamics. PLoS Comput. Biol. 11(9) (2015) - 2013
- [j7]Purushottam D. Dixit, Sergei Maslov:
Evolutionary Capacitance and Control of Protein Stability in Protein-Protein Interaction Networks. PLoS Comput. Biol. 9(4) (2013) - [j6]Tin Yau Pang, Sergei Maslov:
Universal distribution of component frequencies in biological and technological systems. Proc. Natl. Acad. Sci. USA 110(15): 6235-6239 (2013) - [c1]Daifeng Wang, Eric Pan, Gang Fang, Sunita Kumari, Fei He, Doreen Ware, Sergei Maslov, Mark Gerstein:
Comparative network analysis of gene co-expression networks reveals the conserved and species-specific functions of cell-wall related genes between Arabidopsis and Poplar. BCB 2013: 689 - 2011
- [j5]Tin Yau Pang, Sergei Maslov:
A Toolbox Model of Evolution of Metabolic Pathways on Networks of Arbitrary Topology. PLoS Comput. Biol. 7(5) (2011)
2000 – 2009
- 2008
- [j4]Iaroslav Ispolatov, Sergei Maslov:
Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks. BMC Bioinform. 9 (2008) - [p1]Sergei Maslov:
Topological and Dynamical Properties of Protein Interaction Networks. Protein-protein Interactions and Networks 2008: 115-137 - 2007
- [j3]P. Chen, H. Xie, Sergei Maslov, Sidney Redner:
Finding scientific gems with Google's PageRank algorithm. J. Informetrics 1(1): 8-15 (2007) - [j2]Sandeep Krishna, Sergei Maslov, Kim Sneppen:
UV-Induced Mutagenesis in Escherichia coli SOS Response: A Quantitative Model. PLoS Comput. Biol. 3(3) (2007) - 2006
- [j1]Anton Yuryev, Zufar Mulyukov, Ekaterina Kotelnikova, Sergei Maslov, Sergei Egorov, Alexander Nikitin, Nikolai Daraselia, Ilya Mazo:
Automatic pathway building in biological association networks. BMC Bioinform. 7: 171 (2006) - [i1]Dylan Walker, Huafeng Xie, Koon-Kiu Yan, Sergei Maslov:
Ranking Scientific Publications Using a Simple Model of Network Traffic. CoRR abs/physics/0612122 (2006)
Coauthor Index
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