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ORCIDClaus Lundegaard
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2010 – 2019
- 2012
[j14]Yohan Kim, Julia V. Ponomarenko
, Zhanyang Zhu, Dorjee Tamang, Peng Wang, Jason Greenbaum, Claus Lundegaard, Alessandro Sette, Ole Lund, Philip E. Bourne, Morten Nielsen, Bjoern Peters:
Immune epitope database analysis resource. Nucleic Acids Res. 40(Web-Server-Issue): 525-530 (2012)- [j13]Jens Vindahl Kringelum, Claus Lundegaard, Ole Lund, Morten Nielsen:
Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking. PLoS Comput. Biol. 8(12) (2012) - 2010
- [j12]Morten Nielsen, Claus Lundegaard, Ole Lund, Thomas Nordahl Petersen:
CPHmodels-3.0 - remote homology modeling using structure-guided sequence profiles. Nucleic Acids Res. 38(Web-Server-Issue): 576-581 (2010) - [c3]Claus Lundegaard, M. Buggert, A. C. Karlsson, Ole Lund, Carina Perez, Morten Nielsen:
PopCover: a method for selecting of peptides with optimal population and pathogen coverage. BCB 2010: 658-659
2000 – 2009
- 2009
- [j11]Hao Zhang, Claus Lundegaard, Morten Nielsen:
Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods. Bioinform. 25(1): 83-89 (2009) - 2008
- [j10]Claus Lundegaard, Ole Lund, Morten Nielsen:
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers. Bioinform. 24(11): 1397-1398 (2008) - [j9]Claus Lundegaard, Kasper Lamberth, Mikkel Harndahl, Søren Buus, Ole Lund, Morten Nielsen:
NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11. Nucleic Acids Res. 36(Web-Server-Issue): 509-512 (2008) - [j8]Qing Zhang, Peng Wang, Yohan Kim, Pernille Haste-Andersen, John E. Beaver, Philip E. Bourne, Huynh-Hoa Bui, Søren Buus, Sune Frankild, Jason Greenbaum, Ole Lund, Claus Lundegaard, Morten Nielsen, Julia V. Ponomarenko, Alessandro Sette, Zhanyang Zhu, Björn Peters:
Immune epitope database analysis resource (IEDB-AR). Nucleic Acids Res. 36(Web-Server-Issue): 513-518 (2008) - [j7]Morten Nielsen, Claus Lundegaard, Thomas Blicher, Bjoern Peters, Alessandro Sette, Sune Justesen, Søren Buus, Ole Lund:
Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan. PLoS Comput. Biol. 4(7) (2008) - 2007
- [j6]Claus Lundegaard, Ole Lund, Can Kesmir, Søren Brunak, Morten Nielsen:
Modeling the adaptive immune system: predictions and simulations. Bioinform. 23(24): 3265-3275 (2007) - [j5]Mette V. Larsen, Claus Lundegaard, Kasper Lamberth, Søren Buus, Ole Lund, Morten Nielsen:
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. BMC Bioinform. 8 (2007) - [j4]Morten Nielsen, Claus Lundegaard, Ole Lund:
Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method. BMC Bioinform. 8 (2007) - 2006
- [j3]Bjoern Peters, Huynh-Hoa Bui, Sune Frankild, Morten Nielsen, Claus Lundegaard, Emrah Kostem, Derek Basch, Kasper Lamberth, Mikkel Harndahl, Ward Fleri, Stephen S. Wilson, John Sidney, Ole Lund, Søren Buus, Alessandro Sette:
A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules. PLoS Comput. Biol. 2(6) (2006) - 2005
- [b1]Ole Lund, Morten Nielsen, Claus Lundegaard, Can Kesmir, Søren Brunak:
Immunological bioinformatics. Computational molecular biology, AAAI Press 2005, ISBN 978-0-262-12280-1, pp. I-XII, 1-296 - 2004
- [j2]Morten Nielsen, Claus Lundegaard, Peder Worning, Christina Sylvester-Hvid, Kasper Lamberth, Søren Buus, Søren Brunak, Ole Lund:
Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach. Bioinform. 20(9): 1388-1397 (2004) - [c2]Claus Lundegaard, Morten Nielsen, Kasper Lamberth, Peder Worning, Christina Sylvester-Hvid, Søren Buus, Søren Brunak, Ole Lund:
MHC Class I Epitope Binding Prediction Trained on Small Data Sets. ICARIS 2004: 217-225 - 2003
- [j1]Jens Kaae Christensen, Kasper Lamberth, Morten Nielsen, Claus Lundegaard, Peder Worning, Sanne Lise Lauemøller, Søren Buus, Søren Brunak, Ole Lund:
Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach. Neural Comput. 15(12): 2931-2942 (2003) - [c1]Claus Lundegaard, Thomas Nordahl Petersen, Morten Nielsen, Henrik Bohr, Jakob Bohr, Søren Brunak, Garry Gippert, Ole Lund:
Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks. Mathematical Methods for Protein Structure Analysis and Design 2003: 117-122
Coauthor Index
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