Computer Methods and Programs in Biomedicine, Volume 240

Volume 240, October 2023

Section II: Biomedical signal and image processing methods

• 
  Fang Chen, Lingyu Chen, Tianze Xu, Haoran Ye, Hongen Liao, Daoqiang Zhang:
  Precise angle estimation of capsule robot in ultrasound using heatmap guided two-stage network. 107605
• 
  Supriya Suman, Anil Kumar Tiwari, Kuldeep Singh:
  Computer-aided diagnostic system for hypertensive retinopathy: A review. 107627

Section V: Others

• 
  Joaquín Flores Gerónimo, Jordi Alastruey, Alireza Keramat:
  Signatures of obstructions and expansions in the arterial frequency response. 107628

Section II: Biomedical signal and image processing methods

• 
  Kevin Barrera, José Rodellar, Santiago Alférez, Anna Merino:
  Automatic normalized digital color staining in the recognition of abnormal blood cells using generative adversarial networks. 107629
• 
  Avinash Bansal, Sumit Kaushik, Temesgen Bihonegn, Jan Slovak:
  Automatic tractography and segmentation using finsler geometry based on higher-order tensor fields. 107630
• 
  Tianqiao Zhang, Qiaoqian Wei, Zhenzhen Li, Wenjing Meng, Mengjiao Zhang, Zhengwei Zhang:
  Segmentation of paracentral acute middle maculopathy lesions in spectral-domain optical coherence tomography images through weakly supervised deep convolutional networks. 107632

Section III: Modelling & Simulation

• 
  Balázs Benyó, Béla Paláncz, Ákos Szlávecz, Bálint Szabó, Katalin Kovács, J. Geoffrey Chase:
  Classification-based deep neural network vs mixture density network models for insulin sensitivity prediction problem. 107633

Section II: Biomedical signal and image processing methods

• 
  Weifeng Ma, Chuanlai Wang, Xiaoyong Sun, Xuefen Lin, Lei Niu, Yuchen Wang:
  MBGA-Net: A multi-branch graph adaptive network for individualized motor imagery EEG classification. 107641
• 
  Lingyu Chen, Hongen Liao, Wentao Kong, Daoqiang Zhang, Fang Chen:
  Anatomy preserving GAN for realistic simulation of intraoperative liver ultrasound images. 107642

Section IV: Classification and interpretation

• 
  Kyungsu Kim, Ju Hwan Lee, Seong Je Oh, Myung Jin Chung:
  AI-based computer-aided diagnostic system of chest digital tomography synthesis: Demonstrating comparative advantage with X-ray-based AI systems. 107643

Diagnostics and Decision Support

• 
  Yoonseok Choi, Mohammed A. Al-masni, Kyu-Jin Jung, Roh-Eul Yoo, Seong-Yeong Lee, Dong-Hyun Kim:
  A single stage knowledge distillation network for brain tumor segmentation on limited MR image modalities. 107644

Section IV: Classification and interpretation

• 
  Binh Nguyen, Andrei B. B. Torres, Caroline W. Espinola, Walter Sim, Deborah Kenny, Douglas M. Campbell, Wendy Lou, Bill Kapralos, Lindsay Beavers, Elizabeth Peter, Adam Dubrowski, Sridhar Krishnan, Venkat Bhat:
  Development of a data-driven digital phenotype profile of distress experience of healthcare workers during COVID-19 pandemic. 107645

Section III: Modelling & Simulation

• 
  Zhiwei Wu, Jinhui Zhang, Siyi Wei, Duanduan Chen:
  Kirchhoff rod-based three-dimensional dynamical model and real-time simulation for medical-magnetic guidewires. 107646

Section II: Biomedical signal and image processing methods

• 
  Georg Hille, Shubham Agrawal, Pavan Tummala, Christian Wybranski, Maciej Pech, Alexey Surov, Sylvia Saalfeld:
  Joint liver and hepatic lesion segmentation in MRI using a hybrid CNN with transformer layers. 107647
• 
  Wanni Xu, You-Lei Fu, Dongmei Zhu:
  ResNet and its application to medical image processing: Research progress and challenges. 107660
• 
  Geun-Hyeong Kim, Jae-Woo Kim, Ka-Hyun Kim, Hyeran Kang, Jae Young Moon, Yoon Mi Shin, Seung Park:
  FT-GAT: Graph neural network for predicting spontaneous breathing trial success in patients with mechanical ventilation. 107673

Section III: Modelling & Simulation

• 
  Jianjun Yan, Shiyu Cai, Xianglei Cai, Guangyao Zhu, Wei Zhou, Rui Guo, Haixia Yan, Yiqin Wang:
  Uncertainty quantification of microcirculatory characteristic parameters for recognition of cardiovascular diseases. 107674
• 
  Jort A. Groen, Johannes Crezee, Hanneke W. M. van Laarhoven, Maarten F. Bijlsma, H. Petra Kok:
  Quantification of tissue property and perfusion uncertainties in hyperthermia treatment planning: Multianalysis using polynomial chaos expansion. 107675

Section II: Biomedical signal and image processing methods

• 
  Yadan Zhang, Liang Jian, Wu Jian, Yifu Li, Li Haiying, Li Hairui:
  An expert review of the inverse problem in electrocardiographic imaging for the non-invasive identification of atrial fibrillation drivers. 107676

Section IV: Classification and interpretation

• 
  Kelvin KL Wong, Muhammad Ayoub, Zaijie Cao, Cang Chen, Weimin Chen, Dhanjoo N. Ghista, Chris W. J. Zhang:
  The synergy of cybernetical intelligence with medical image analysis for deep medicine: A methodological perspective. 107677

Section II: Biomedical signal and image processing methods

• 
  Jee Sook Ra, Tianning Li, Yan Li:
  A novel epileptic seizure prediction method based on synchroextracting transform and 1-dimensional convolutional neural network. 107678
• 
  Huaifei Hu, Ning Pan, Alejandro F. Frangi:
  Fully Automatic initialization and segmentation of left and right ventricles for large-scale cardiac MRI using a deeply supervised network and 3D-ASM. 107679

Section IV: Classification and interpretation

• 
  Prashant Mani Tripathi, Ashish Kumar, Manjeet Kumar, Rama S. Komaragiri:
  Automatic seizure detection and classification using super-resolution superlet transform and deep neural network -A preprocessing-less method. 107680

Section III: Modelling & Simulation

• 
  Anna Procopio, Giuseppe Cesarelli, Leandro Donisi, Alessio Merola, Francesco Amato, Carlo Cosentino:
  Combined mechanistic modeling and machine-learning approaches in systems biology - A systematic literature review. 107681

Section I: Biocybernetics and Big Data

• 
  Afifa Tanweer, Mutayyabah Zia, Kainat Riaz, Hina Mushtaq, Momel Siddique, Samra Imran, Ayesha Humayun, Zaib-un-nisa Hussain:
  Comparing the web-based and traditional self-reported 24-hour dietary recall data in the PakNutriStudy. 107682

Section IV: Classification and interpretation

• 
  Mohsen Parsa, Habib Yousefi Rad, Hadi Vaezi, Gholam-Ali Hossein-Zadeh, Seyed Kamaledin Setarehdan, Reza Rostami, Hana Rostami, Abdol-Hossein Vahabie:
  EEG-based classification of individuals with neuropsychiatric disorders using deep neural networks: A systematic review of current status and future directions. 107683

Section V: Others

• 
  Marek Socha, Wojciech Prazuch, Aleksandra Suwalska, Pawel Foszner, Joanna Tobiasz, Jerzy Jaroszewicz, Katarzyna Gruszczynska, Magdalena Sliwinska, Mateusz Nowak, Barbara Gizycka, Gabriela Zapolska, Tadeusz Popiela, Grzegorz Przybylski, Piotr Fiedor, Malgorzata Pawlowska, Robert Flisiak, Krzysztof Simon, Jerzy Walecki, Andrzej Cieszanowski, Edyta Szurowska, Michal Marczyk, Joanna Polanska:
  Pathological changes or technical artefacts? The problem of the heterogenous databases in COVID-19 CXR image analysis. 107684

Section II: Biomedical signal and image processing methods

• 
  Yanbin Liu, Girish Dwivedi, Farid Boussaïd, Frank M. Sanfilippo, Makoto Yamada, Mohammed Bennamoun:
  Inflating 2D convolution weights for efficient generation of 3D medical images. 107685

Section III: Modelling & Simulation

• 
  Xiaolin Ni, Hanqing Zhao, Rongqiao Li, Huabin Su, Juan Jiao, Ze Yang, Yuan Lv, Guofang Pang, Meiqi Sun, Caiyou Hu, Huiping Yuan:
  Development of a model for the prediction of biological age. 107686

Section IV: Classification and interpretation

• 
  Linhai Ma, Liang Liang:
  Increasing-Margin Adversarial (IMA) training to improve adversarial robustness of neural networks. 107687

Section II: Biomedical signal and image processing methods

• 
  Ronghao Pei, Kang Yao, Xiaobin Xu, Xin Zhang, Xiaodong Yang, Weiwei Fu, Yang Zhang:
  TransFusion-net for multifocus microscopic biomedical image fusion. 107688
• 
  Connor Elkhill, Jiawei Liu, Marius George Linguraru, Scott LeBeau, David Khechoyan, Brooke French, Antonio R. Porras:
  Geometric learning and statistical modeling for surgical outcomes evaluation in craniosynostosis using 3D photogrammetry. 107689

Section III: Modelling & Simulation

• 
  Chon Lok Lei, Michael Clerx, David J. Gavaghan, Gary R. Mirams:
  Model-driven optimal experimental design for calibrating cardiac electrophysiology models. 107690

Diagnostics and Decision Support

• 
  Bong-Il Song, Jinny Lee, Won-Ho Jung, Bum Soo Kim:
  Pure uric acid stone prediction model using the variant coefficient of stone density measured by thresholding 3D segmentation-based methods: A multicenter study. 107691

Section II: Biomedical signal and image processing methods

• 
  Ahmed Alksas, Ahmed Shaffie, Mohammed Ghazal, Fatma Taher, Adel Khelifi, Maha Yaghi, Ahmed Soliman, Eric Van Bogaert, Ayman El-Baz:
  A novel higher order appearance texture analysis to diagnose lung cancer based on a modified local ternary pattern. 107692

Section IV: Classification and interpretation

• 
  Antoine Simoulin, Nicolas Thiebaut, Karl Neuberger, Issam Ibnouhsein, Nicolas J.-B. Brunel, Raphaël Viné, Nicolas Bousquet, Jules Latapy, Nathalie Reix, Sébastien Molière, Massimo Lodi, Carole Mathelin:
  From free-text electronic health records to structured cohorts: Onconum, an innovative methodology for real-world data mining in breast cancer. 107693

Section III: Modelling & Simulation

• 
  Min Hyuk Lim, Sungwan Kim:
  A practical approach based on learning-based model predictive control with minimal prior knowledge of patients for artificial pancreas. 107694

Section II: Biomedical signal and image processing methods

• 
  Alejandro Golfe, Rocío del Amor, Adrián Colomer, María Á. Sales, Liria Terradez, Valery Naranjo:
  ProGleason-GAN: Conditional progressive growing GAN for prostatic cancer Gleason grade patch synthesis. 107695

Section I: Biocybernetics and Big Data

• 
  Shuo-Chen Chien, Hsuan-Chia Yang, Chun-You Chen, Chia-Hui Chien, Chun-Kung Hsu, Po-Han Chien, Yu-Chuan (Jack) Li:
  Using alert dwell time to filter universal clinical alerts: A machine learning approach. 107696

Diagnostics and Decision Support

• 
  Axel Fürstberger, Nensi Ikonomi, Angelika M. R. Kestler, Ralf Marienfeld, Julian D. Schwab, Peter Kuhn, Thomas Seufferlein, Hans A. Kestler:
  AMBAR - Interactive Alteration annotations for molecular tumor boards. 107697

Section IV: Classification and interpretation

• 
  Jingjing Dong, Kang Wang, Jingquan He, Qi Guo, Haodi Min, Donge Tang, Zeyu Zhang, Cantong Zhang, Fengping Zheng, Yixi Li, Huixuan Xu, Gang Wang, Shaodong Luan, Lianghong Yin, Xinzhou Zhang, Yong Dai:
  Machine learning-based intradialytic hypotension prediction of patients undergoing hemodialysis: A multicenter retrospective study. 107698

Section III: Modelling & Simulation

• 
  Martina Vettoretti, Martina Drecogna, Simone Del Favero, Andrea Facchinetti, Giovanni Sparacino:
  A Markov Model of Gap Occurrence in Continuous Glucose Monitoring Data for Realistic in Silico Clinical Trials. 107700

Section II: Biomedical signal and image processing methods

• 
  Qingjun Cao, Hongzan Sun, Hua Wang, Xueyan Liu, Yu Lu, Liang Huo:
  Comparative study of neonatal brain injury fetuses using machine learning methods for perinatal data. 107701

Section IV: Classification and interpretation

• 
  Hui Zhang, Hong Wang, Shu Han, Wei Li, Luhe Zhuang:
  Detecting depression tendency with multimodal features. 107702

Section II: Biomedical signal and image processing methods

• 
  Yu Liu, Ang Li, Ran Cheng, Bingxuan Li, Qingguo Xie, Xiaoping Wang, Bensheng Qiu, Xun Chen, Peng Xiao:
  A depth-of-interaction rebinning method based on both geometric and activity weights. 107703

Section III: Modelling & Simulation

• 
  (Withdrawn) Research on individualized distribution approach of coronary resting blood flow for noninvasive calculation of fractional flow reserve. 107704

Section IV: Classification and interpretation

• 
  Liang Sun, Yunling Zhang, Tang Liu, Hongwei Ge, Juan Tian, Xin Qi, Jian Sun, Yiping Zhao:
  A collaborative multi-task learning method for BI-RADS category 4 breast lesion segmentation and classification of MRI images. 107705

Section II: Biomedical signal and image processing methods

• 
  Isaac Shiri, Behrooz Razeghi, Alireza Vafaei Sadr, Mehdi Amini, Yazdan Salimi, Sohrab Ferdowsi, Peter Boor, Deniz Gündüz, Slava Voloshynovskiy, Habib Zaidi:
  Multi-institutional PET/CT image segmentation using federated deep transformer learning. 107706

Section III: Modelling & Simulation

• 
  Chao Shi, Qing Yang, Xiangrui Zhao, Shuchang Shi, Sutuke Yibulayimu, Jixuan Liu, Yu Wang, Chunpeng Zhao:
  Fast and precise collision detection for detailed and complex physiological structures. 107707

Section II: Biomedical signal and image processing methods

• 
  Kyungsu Kim, Chae Yeon Lim, Joong Bo Shin, Myung Jin Chung, Yong Gi Jung:
  Enhanced artificial intelligence-based diagnosis using CBCT with internal denoising: Clinical validation for discrimination of fungal ball, sinusitis, and normal cases in the maxillary sinus. 107708

Section III: Modelling & Simulation

• 
  Guangming Xu, Ziyang Liang, Tengfei Tian, Qingnan Meng, Komera Musoni Bertin, Fuhao Mo:
  Development of a finite element full spine model with active muscles for quantitatively analyzing sarcopenia effects on lumbar load. 107709

Corrigenda

• 
  Carlos Cueto, Oscar Bates, George Strong, Javier Cudeiro, Thomas Caradoc Robins, Fabio Luporini, Oscar Calderon Agudo, Gerard Gorman, Lluís Guasch, Meng-Xing Tang:
  Corrigendum to Stride: A flexible software platform for high-performance ultrasound computed tomography Computer Methods and Programs in Biomedicine 221 (2022) 106855. 107710

Section II: Biomedical signal and image processing methods

• 
  Xiao Wei, Hongbo Guo, Jingjing Yu, Yanqiu Liu, Yingcheng Zhao, Xiaowei He:
  Multi-target reconstruction based on subspace decision optimization for bioluminescence tomography. 107711
• 
  Silvio Zanoli, Giovanni Ansaloni, Tomás Teijeiro, David Atienza:
  Event-based sampled ECG morphology reconstruction through self-similarity. 107712
• 
  Guilherme C. Oliveira, Quoc Cuong Ngo, Leandro A. Passos, João P. Papa, Danilo S. Jodas, Dinesh K. Kumar:
  Tabular data augmentation for video-based detection of hypomimia in Parkinson's disease. 107713
• 
  Mohammad R. Salmanpour, Mahdi Hosseinzadeh, Seyed Masoud Rezaeijo, Arman Rahmim:
  Fusion-based tensor radiomics using reproducible features: Application to survival prediction in head and neck cancer. 107714

Diagnostics and Decision Support

• 
  Benoît Bossavit, Inmaculada Arnedillo Sánchez:
  Motion-based technology to support motor skills screening in developing children: A scoping review. 107715

Section II: Biomedical signal and image processing methods

• 
  Pankaj, Ashish Kumar, Rama Komaragiri, Manjeet Kumar:
  A novel CS-NET architecture based on the unification of CNN, SVM and super-resolution spectrogram to monitor and classify blood pressure using photoplethysmography. 107716

Diagnostics and Decision Support

• 
  Juan Lu, Jonathon Stewart, Mohammed Bennamoun, Adrian Goudie, Jason Eshraghian, Abdul Ihdayhid, Frank M. Sanfilippo, Gary R. Small, Benjamin J. W. Chow, Girish Dwivedi:
  Deep learning model to predict exercise stress test results: Optimizing the diagnostic test selection strategy and reduce wastage in suspected coronary artery disease patients. 107717

Section II: Biomedical signal and image processing methods

• 
  Anwar Khan, Seunghyeon Han, Naveed Ilyas, Yong-Moon Lee, Boreom Lee:
  CervixFormer: A Multi-scale swin transformer-Based cervical pap-Smear WSI classification framework. 107718

Diagnostics and Decision Support

• 
  Alberto Ramírez-Mena, Eduardo Andrés León, Maria Jesus Alvarez-Cubero, Augusto Anguita-Ruiz, Luis Javier Martinez-Gonzalez, Jesús Alcalá-Fdez:
  Explainable artificial intelligence to predict and identify prostate cancer tissue by gene expression. 107719
• 
  Diogo Pessoa, Bruno Moraes Rocha, Claas Strodthoff, Maria Gomes, Guilherme Silva Rodrigues, Georgios Petmezas, Grigorios-Aris Cheimariotis, Vassilis Kilintzis, Evangelos Kaimakamis, Nicos Maglaveras, Alda Marques, Inéz Frerichs, Paulo de Carvalho, Rui Pedro Paiva:
  BRACETS: Bimodal repository of auscultation coupled with electrical impedance thoracic signals. 107720

Section II: Biomedical signal and image processing methods

• 
  Chenglong Zhang, Zhimin Zhang, Dexin Yu, Qiyuan Cheng, Shihao Shan, Mengjiao Li, Lichao Mou, Xiaoli Yang, Xiaopeng Ma:
  Unsupervised band selection of medical hyperspectral images guided by data gravitation and weak correlation. 107721

Section III: Modelling & Simulation

• 
  Kunichika Tsumoto, Takao Shimamoto, Yuma Aoji, Yukiko Himeno, Yuhichi Kuda, Mamoru Tanida, Akira Amano, Yasutaka Kurata:
  Theoretical prediction of early afterdepolarization-evoked triggered activity formation initiating ventricular reentrant arrhythmias. 107722

Diagnostics and Decision Support

• 
  Ting Zhu, Xiaofei Liu, Junren Wang, Ran Kou, Yao Hu, Minlan Yuan, Cui Yuan, Li Luo, Wei Zhang:
  Explainable machine-learning algorithms to differentiate bipolar disorder from major depressive disorder using self-reported symptoms, vital signs, and blood-based markers. 107723

Section II: Biomedical signal and image processing methods

• 
  Hongmin Gao, Meiling Wang, Xinyu Sun, Xueying Cao, Chenming Li, Qin Liu, Peipei Xu:
  Unsupervised dimensionality reduction of medical hyperspectral imagery in tensor space. 107724

Section III: Modelling & Simulation

• 
  Alan David Hutson, Han Yu:
  Exact inference around ordinal measures of association is often not exact. 107725

Section V: Others

• 
  Antria Filippou, Andreas Georgiou, Anastasia Nikolaou, Nikolas Evripidou, Christakis Damianou:
  Advanced software for MRgFUS treatment planning. 107726

Section III: Modelling & Simulation

• 
  Alessandra Aldieri, Cristina Curreli, Julia Aleksandra Szyszko, Antonino Amedeo La Mattina, Marco Viceconti:
  Credibility assessment of computational models according to ASME V&V40: Application to the Bologna Biomechanical Computed Tomography solution. 107727
• 
  Christopher Yew Shuen Ang, Yeong Shiong Chiew, Xin Wang, Ean Hin Ooi, Mohd Basri Mat Nor, Matthew E. Cove, J. Geoffrey Chase:
  Virtual patient with temporal evolution for mechanical ventilation trial studies: A stochastic model approach. 107728

Section II: Biomedical signal and image processing methods

• 
  Runze Wang, Qin Zhou, Guoyan Zheng:
  EDRL: Entropy-guided disentangled representation learning for unsupervised domain adaptation in semantic segmentation. 107729

Section III: Modelling & Simulation

• 
  Mehrdad Khamooshi, Marjan Azimi, Shaun D. Gregory:
  Computational analysis of thrombosis risk with variations in left ventricular assist device inflow cannula design in a multi-patient model. 107730
• 
  Adrián Arias-Blanco, Miguel Marco, Eugenio Giner, Ricardo Larraínzar-Garijo, Maria Henar Miguelez:
  Experimental and numerical analysis of the influence of intramedullary nail position on the cut-out phenomenon. 107734

Section II: Biomedical signal and image processing methods

• 
  Edoardo Spairani, Giulio Steyde, Salvatore Tagliaferri, Maria G. Signorini, Giovanni Magenes:
  Fetal states identification in cardiotocographic tracings through discrete emissions multivariate hidden Markov models. 107736

Section III: Modelling & Simulation

• 
  Donghyuk Kim, Hyunjung Kim:
  Numerical study on optimization of quantitative treatment conditions for skin cancer photothermal therapy considering multiple blood vessels. 107738