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ORCIDF1000Research, Volume 10
Volume 10, 2021
- Antti Väänänen, Keijo Haataja, Katri Vehviläinen-Julkunen
, Pekka J. Toivanen:
AI in healthcare: A narrative review. 6 - Jonathan Shimwell, John Billingsley, Rémi Delaporte-Mathurin, Declan Morbey, Matthew Bluteau, Patrick C. Shriwise, Andrew Davis:
The Paramak: automated parametric geometry construction for fusion reactor designs. 27 - Alexis Robert, Sebastian Funk, Adam J. Kucharski:
o2geosocial: Reconstructing who-infected-whom from routinely collected surveillance data. 31 - Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher Tomkins-Tinch, Vanessa V. Sochat, Jan Forster, Soohyun Lee, Sven Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster:
Sustainable data analysis with Snakemake. 33 - Evgeny S. Zhvansky, Anatoly A. Sorokin, Denis S. Zavorotnyuk, Vsevolod Shurkhay, Vasiliy A. Eliferov, Denis S. Bormotov, Daniil G. Ivanov, Alexander A. Potapov:
Comparison of different machine learning methods and dimensionality reduction for classification astrocytoma and glioblastoma tissues by mass spectra. 39 - Nigel Robb:
Attitudes and habits regarding brain training applications and games among Japanese consumers: a cross-sectional study. 45 - Christian Olaf Häusler, Michael Hanke:
A studyforrest extension, an annotation of spoken language in the German dubbed movie "Forrest Gump" and its audio-description. 54 - Stephan Heunis, Marcel Breeuwer, César Caballero-Gaudes, Lydia Hellrung, Willem Huijbers, Jacobus F. A. Jansen, Rolf Lamerichs, Svitlana Zinger, Albert P. Aldenkamp:
rt-me-fMRI: a task and resting state dataset for real-time, multi-echo fMRI methods development and validation. 70 - Lauren Maxwell, Regina Gilyan, Sayali Arvind Chavan, Laura Merson, Abha Saxena, Rob Terry:
Guidance for ensuring fair and ethical broad consent for future use. A scoping review protocol. 102 - Subina P. Mehta, Marie Crane, Emma Leith, Bérénice Batut, Saskia D. Hiltemann, Magnus Ø. Arntzen, Benoît Josef Kunath, Francesco Delogu, Ray Sajulga, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik D. Jagtap:
ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework. 103 - Sajid Hussain, Muhammad Daniyal, Roseline Oluwaseun Ogundokun, Muhammad Yousaf Shad, Zafar Iqbal, Rashid Ahmed:
Cloning data with unchanged estimates of estimable non-linear functions of parameters. 106 - Nicholas Bacci, Joshua Davimes, Maryna Steyn, Nanette Briers:
Development of the Wits Face Database: an African database of high-resolution facial photographs and multimodal closed-circuit television (CCTV) recordings. 131 - Wei Ouyang, Trang Le, Hao Xu, Emma Lundberg:
Interactive biomedical segmentation tool powered by deep learning and ImJoy. 142 - Travis L. Jensen, William F. Hooper, Sami R. Cherikh, Johannes B. Goll:
RP-REP Ribosomal Profiling Reports: an open-source cloud-enabled framework for reproducible ribosomal profiling data processing, analysis, and result reporting. 143 - Heather E. Burgess, Joanna Chataway:
The importance of mentorship and collaboration for scientific capacity-building and capacity-sharing: perspectives of African scientists. 164 - Derek Reiman, Ahmed Metwally, Jun Sun, Yang Dai:
Meta-Signer: Metagenomic Signature Identifier based onrank aggregation of features. 194 - Adelaide M. Lusambili, Sharon Ochieng, Mary M. Nyikuri, Constance S. Shumba:
Conducting qualitative research during COVID-19: reflections on methods and challenges when interviewing marginalized refugee women. 205 - Christopher Rydell, Joakim Lindblad:
CytoBrowser: a browser-based collaborative annotation platform for whole slide images. 226 - Antti Väänänen, Keijo Haataja, Katri Vehviläinen-Julkunen, Pekka J. Toivanen:
Proposal of a novel Artificial Intelligence Distribution Service platform for healthcare. 245 - Daniel Nüst, Stephen J. Eglen:
CODECHECK: an Open Science initiative for the independent execution of computations underlying research articles during peer review to improve reproducibility. 253 - Thierry Pécot, Alexander V. Alekseyenko, Kristin Wallace:
A deep learning segmentation strategy that minimizes the amount of manually annotated images. 256 - Miranda Robbins, Charles N. Christensen, Clemens F. Kaminski, Marta Zlatic:
Calcium imaging analysis - how far have we come? 258 - Wolfgang Höhl:
COVID-19 and digital transformation: developing an open experimental testbed for sustainable and innovative environments using Fuzzy Cognitive Maps. 264 - Vitaly V. Babenko, Denis V. Yavna, Pavel N. Ermakov, Polina V. Anokhina:
Nonlocal contrast calculated by the second order visual mechanisms and its significance in identifying facial emotions. 274 - Fatima Al Ali, Alexandra K. Marr, Zohreh Tatari-Calderone, Mohamed Alfaki, Mohammed Toufiq, Jessica Roelands, Basirudeen Syed Ahamed Kabeer, Davide Bedognetti, Nico Marr, Mathieu Garand, Darawan Rinchai, Damien Chaussabel:
Organizing gene literature retrieval, profiling, and visualization training workshops for early career researchers. 275 - Benjamin Mayer, Meike Schwan, Kai M. Thormann, Peter L. Graumann:
Antibiotic Drug screening and Image Characterization Toolbox (A.D.I.C.T.): a robust imaging workflow to monitor antibiotic stress response in bacterial cells in vivo. 277 - Michael Hewera, Daniel Hänggi, Björn Gerlach, Ulf Dietrich Kahlert:
eLabFTW as an Open Science tool to improve the quality and translation of preclinical research. 292 - José L. Medina-Franco:
Expanding the Chemical Information Science gateway. 294 - Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase:
Developing open-source software for bioimage analysis: opportunities and challenges. 302 - Perrine Paul-Gilloteaux, Sébastien Tosi, Jean-Karim Hériché, Alban Gaignard, Hervé Ménager, Raphaël Marée, Volker Bäcker, Anna H. Klemm, Matús Kalas, Chong Zhang, Kota Miura, Julien Colombelli:
Bioimage analysis workflows: community resources to navigate through a complex ecosystem. 320 - Thaís Ramos, Nilbson R. O. Galindo, Raúl Arias-Carrasco, Cecília Silva, Vinicius Maracaja-Coutinho, Thaís Gaudencio do Rêgo:
RNAmining: A machine learning stand-alone and web server tool for RNA coding potential prediction. 323 - Hugh F. Williamson, Julia Brettschneider, Mario Cáccamo, Robert P. Davey, Carole A. Goble, Paul J. Kersey, Sean T. May, Richard J. Morris, Richard Ostler, Tony P. Pridmore, Christopher J. Rawlings, David J. Studholme, Sotirios A. Tsaftaris, Sabina Leonelli:
Data management challenges for artificial intelligence in plant and agricultural research. 324 - David Legland, Marie-Françoise Devaux:
ImageM: a user-friendly interface for the processing of multi-dimensional images with Matlab. 333 - Sneha Nayak, Sravani Vemulapalli, Santhosh Krishnan Venkata, Meghana Shankar:
Design of a soft sensing technique for measuring pitch and yaw angular positions for a Twin Rotor MIMO System. 342 - Mahmoud Ahmed, Deok Ryong Kim:
target: an R package to predict combined function of transcription factors. 344 - Wanida Neranon, Ladaporn Thongsong:
Development of a computer-assisted instructional package for life skills to prevent risky sexual behaviors in early adolescents, Bangkok, Thailand. 385 - Cynthia M. Kroeger, Bridget A Hannon, Tanya M. Halliday, Keisuke Ejima, Margarita Teran-Garcia, Andrew W. Brown:
Evidence of misuse of nonparametric tests in the presence of heteroscedasticity within obesity research. 391 - José L. Medina-Franco, Karina Martínez-Mayorga, Eli Fernández-de Gortari, Johannes Kirchmair, Jürgen Bajorath:
Rationality over fashion and hype in drug design. 397 - Lena Schmidt, Babatunde K. Olorisade, Luke A. McGuinness, James Thomas, Julian P. T. Higgins:
Data extraction methods for systematic review (semi)automation: A living systematic review. 401 - Gabriel Reder, Adamo Young, Jaan Altosaar, Jakub Rajniak, Noémie Elhadad, Michael Fischbach, Susan Holmes:
Supervised topic modeling for predicting molecular substructure from mass spectrometry. 403 - Theo Killian, Laurent Gatto:
Exploiting the DepMap cancer dependency data using the depmap R package. 416 - Megan H. Murray, Jeffrey D. Blume:
FDRestimation: Flexible False Discovery Rate Computation in R. 441 - Ken Masters, Nadia Al-Wardy:
Designing and developing an app to perform Hofstee cut-off calculations. 450 - Daniel G. Hamilton, Hannah Fraser, Fiona Fidler, Steve McDonald, Anisa Rowhani-Farid, Kyungwan Hong, Matthew J. Page:
Rates and predictors of data and code sharing in the medical and health sciences: Protocol for a systematic review and individual participant data meta-analysis. 491 - Rusen N. Tanribilir:
Analysing antecedence of an intelligent voice assistant use intention and behaviour. 496 - Claire Garnett, Olga Perski, Susan Michie, Robert West, Matt Field, Eileen Kaner, Marcus Munafò, Felix Greaves, Matthew Hickman, Robyn Burton, Jamie Brown:
Refining the content and design of an alcohol reduction app, Drink Less, to improve its usability and effectiveness: a mixed methods approach. 511 - Ola Spjuth, Marco Capuccini, Matteo Carone, Anders Larsson, Wesley Schaal, Jon Ander Novella, Oliver Stein, Morgan Ekmefjord, Paolo Di Tommaso, Evan W. Floden, Cédric Notredame, Pablo A. Moreno, Andreas Hellander, Payam Emami Khoonsari, Stephanie Herman, Kim Kultima, Samuel Lampa:
Approaches for containerized scientific workflows in cloud environments with applications in life science. 513 - Soon Heng Yeap, Siamak Dawazdah Emami, Hairul A. Abdul-Rashid:
Numerical model for enhancing stimulated Brillouin scattering in optical microfibers. 521 - Tyrone Chen, Al J. Abadi, Kim-Anh Lê Cao, Sonika Tyagi:
multiomics: A user-friendly multi-omics data harmonisation R pipeline. 538 - Romain D. Cazé:
Any neuron can perform linearly non-separable computations. 539 - Peter Briggs, A. Louise Hunter, Shen-hsi Yang, Andrew D. Sharrocks, Mudassar Iqbal:
PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals. 570 - Laura R. Marusich, Jonathan Z. Bakdash:
rmcorrShiny: A web and standalone application for repeated measures correlation. 697 - Sunkanmi Oluwaleye, Victoria Wumi Oguntosin, Francis E. Idachaba:
Conceptual design of smart multi-farm produce dehydrator using a low-cost programmable logic controller and raspberry pi. 810 - Benedicta Aladeitan, Adewale F. Lukman, Esther Davids, Ebele H. Oranye, B. M. Golam Kibria:
Unbiased K-L estimator for the linear regression model. 832 - Francesco Reina, John M. A. Wigg, Mariia Dmitrieva, Joël Lefebvre, Jens Rittscher, Christian Eggeling:
TRAIT2D: a Software for Quantitative Analysis of Single Particle Diffusion Data. 838 - Krishna Choudhary, Alexander R. Pico:
Introducing R as a smart version of calculators enables beginners to explore it on their own. 859 - Min-Yee Leong, Jing-Hui Kwan, Ming-Ming Lai:
Technology readiness and UTAUT2 in e-wallet adoption in a developing country. 863 - Sini Govindapillai, Lay-Ki Soon, Su-Cheng Haw:
Resource Description Framework reification for trustworthiness in knowledge graphs. 881 - Francis Kiroro, Majid Twahir, Daniel Kiura, Ann Kamuyu, Ann Wanyoike:
Hospital quality monitoring and evaluation system using linked spreadsheets on Microsoft SharePoint. 883 - Anna-Lena Lamprecht, Magnus Palmblad, Jon C. Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Ilkay Altintas, Christopher J. O. Baker, Ammar Ben Hadj Amor, Salvador Capella-Gutiérrez, Paulos Charonyktakis, Michael R. Crusoe, Yolanda Gil, Carole A. Goble, Timothy J. Griffin, Paul Groth, Hans Ienasescu, Pratik D. Jagtap, Matús Kalas, Vedran Kasalica, Alireza Khanteymoori, Tobias Kuhn, Hailiang Mei, Hervé Ménager, Steffen Möller, Robin A. Richardson, Vincent Robert, Stian Soiland-Reyes, Robert Stevens, Szaniszlo Szoke, Suzan Verberne, Aswin Verhoeven, Katherine Wolstencroft:
Perspectives on automated composition of workflows in the life sciences. 897 - Olaosebikan Tahir Yinka, Su-Cheng Haw, Timothy Tzen Vun Yap, Samini Subramaniam:
Improving the data access control using blockchain for healthcare domain. 901 - Su-Cheng Haw, Aisyah Amin, Chee-Onn Wong, Samini Subramaniam:
Improving the support for XML dynamic updates using a hybridization labeling scheme (ORD-GAP). 907 - Timothy Tzen Vun Yap, Ting Fong Ho, Hu Ng, Vik Tor Goh:
Exploratory graph analysis of the network data of the Ethereum blockchain. 908 - Radiah Haque, Sin Ban Ho, Ian Chai, Adina Abdullah:
Optimised deep neural network model to predict asthma exacerbation based on personalised weather triggers. 911 - Yee-Loo Foo:
Wireless power transfer with transmit diversity. 916 - Fan Yi Khong, Tee Connie, Michael Goh Kah Ong, Li Pei Wong, Pin Shen Teh, Ai Ling Choo:
Non-invasive health prediction from visually observable features. 918 - Niloofar Shahidi, Xuanzhi Lin, Yuda Munarko, Laila Rasmy, Tram Ngo:
AQUA: an Advanced QUery Architecture for the SPARC Portal. 930 - Jason Chia, Ji-Jian Chin, Sook-Chin Yip:
Digital signature schemes with strong existential unforgeability. 931 - Rathimala Kannan, Ivan Zhi Wei Wang, Hway Boon Ong, Kannan Ramakrishnan, Andry Alamsyah:
COVID-19 impact: Customised economic stimulus package recommender system using machine learning techniques. 932 - Lit-Jie Chew, Su-Cheng Haw, Samini Subramaniam:
A hybrid recommender system based on data enrichment on the ontology modelling. 937 - Nouar AlDahoul, Hezerul Abdul Karim, Myles Joshua Toledo Tan, Mhd Adel Momo, Jamie Ledesma Fermin:
Encoding Retina Image to Words using Ensemble of Vision Transformers for Diabetic Retinopathy Grading. 948 - Ivan Vogel, Lishan Cai, Lea Jerman-Plesec, Eva R. Hoffmann:
SureTypeSCR: R package for rapid quality control and genotyping of SNP arrays from single cells. 953 - Kar Hoong Chan, Tuan Hock Ng, Lee Ying Tay, Chiu Yu Teh:
Antecedents of generation Z towards digitalisation. A PLS-SEM analysis. 963 - Sin Yin Tan, Nuo Wi Noel Tay:
Integrating augmented reality technology in education: vector personal computer augmented reality. 987 - Hu Ng, Glenn Jun Weng Chia, Timothy Tzen Vun Yap, Vik Tor Goh:
Modelling sentiments based on objectivity and subjectivity with self-attention mechanisms. 1001 - Mohammad Nurul Hassan Reza, Sreenivasan Jayashree, Chinnasamy Agamudainambhi Malarvizhi, Md. Abdur Rauf, Kalaivani Jayaraman, Syed Hussain Shareef:
The implications of Industry 4.0 on supply chains amid the COVID-19 pandemic: a systematic review. 1008 - Nouar AlDahoul, Hezerul Abdul Karim, Abdulaziz Saleh Ba Wazir, Myles Joshua Toledo Tan, Mohammad Faizal Ahmad Fauzi:
Spatio-temporal deep learning model for distortion classification in laparoscopic video. 1010 - Adamu Muhammad Buhari, Chee-Pun Ooi, Vishnu Monn Baskaran, Wooi-Haw Tan:
Motion and Geometric Feature Analysis for Real-time Automatic Micro-expression Recognition Systems. 1029 - Md Shohel Sayeed, Pa Pa Min, Thian Song Ong:
Deep supervised hashing for gait retrieval. 1038 - Tung Soon Seng, Magiswary Dorasamy, Ruzanna Razak, Maniam Kaliannan, Murali Sambasivan:
Knowledge creation in IT projects to accelerate digital innovation: two decade systematic literature review. 1040 - Ying-Han Pang, Liew Yee Ping, Goh Fan Ling, Shih Yin Ooi, Wee-How Khoh:
Stacked deep analytic model for human activity recognition on a UCI HAR database. 1046 - Yusuf Yilmaz, Brandon Ruan, Priya Thomas, Victoria Tran, Teresa M. Chan:
Reframing organizations in the digital age: A qualitative study exploring institutional social media adoption. 1048 - Wan Noorshahida Mohd Isa, Joel Joseph, Noramiza Hashim, Nbhan Salih:
Enhancement of digitized X-ray films using Contrast-Limited Adaptive Histogram Equalization (CLAHE). 1051 - Rathimala Kannan, Yonesh Reddiar, Kannan Ramakrishnan, Marrynal S. Eastaff, Shobana Ramesh:
Job characteristics of a Malaysian bank's anti-money laundering system and its employees' job satisfaction. 1052 - Muhammad Nurmahir Mohamad Sehmi, Mohammad Faizal Ahmad Fauzi, Wan Siti Halimatul Munirah Wan Ahmad, Elaine Wan Ling Chan:
Pancreatic cancer grading in pathological images using deep learning convolutional neural networks. 1057 - Abubaker Faisal Abubaker Sherif, Wooi-Haw Tan, Chee-Pun Ooi, Yi-Fei Tan:
Health status classification model for medical adherence system in retirement township. 1065 - Kyle Ong, Kok-Why Ng, Su-Cheng Haw:
Neural matrix factorization++ based recommendation system. 1079 - Nor Hidayati Bt Abdul Aziz, Zuwairie Ibrahim, Nor Azlina Bt Ab. Aziz, Mohd Saberi Mohamad, Muhammad Razlan Kamaruzaman:
A brief review of simulated Kalman Filter Algorithm - variants and applications. 1081 - Francesco Raimondi, Joshua G. Burkhart, Matthew J. Betts, Robert B. Russell, Guanming Wu:
Leveraging biochemical reactions to unravel functional impacts of cancer somatic variants affecting protein interaction interfaces. 1111 - Sharifah Noor Masidayu Sayed Ismail, Nor Azlina Bt Ab. Aziz, Siti Zainab Ibrahim, Sophan Wahyudi Nawawi, Salem Alelyani, Mohamed Mohana, Lee Chia Chun:
Evaluation of electrocardiogram: numerical vs. image data for emotion recognition system. 1114 - Mohamed L. Seghier:
An active human role is essential in big data-led decisions and data-intensive science. 1127 - Ryan Quey, Matthew A. Schiefer, Anmol Kiran, Bhavesh Patel:
KnowMore: an automated knowledge discovery tool for the FAIR SPARC datasets. 1132 - Kalaiarasi Sonai Muthu Anbananthen, Sridevi Subbiah, Deisy Chelliah, Prithika Sivakumar, Varsha Somasundaram, Kethaarini Harshana Velshankar, M. K. A. Ahamed Khan:
An intelligent decision support system for crop yield prediction using hybrid machine learning algorithms. 1143 - Sharbani Harun, Magiswary Dorasamy, Abdul Aziz Bin Ahmad, Ching Seng Yap, Saida Harguem:
Enterprise resource planning implementation within science and technology park (STP) organisations: an avenue for future research. A systematic review. 1148 - Roman Bhuiyan, Junaidi Abdullah, Noramiza Hashim, Fahmid Al Farid, Jia Uddin, Norra Abdullah, Mohd Ali Samsudin:
Crowd density estimation using deep learning for Hajj pilgrimage video analytics. 1190 - Robert M. Waterhouse, Anne-Françoise Adam-Blondon, Donat Agosti, Petr Baldrian, Bachir Balech, Erwan Le Corre, Robert P. Davey, Henrik Lantz, Graziano Pesole, Christian Quast, Frank Oliver Glöckner, Niels Raes, Anna Sandionigi, Monica Santamaria, Wouter Addink, Jiri Vohradsky, Amandine Nunes-Jorge, Nils Peder Willassen, Jerry Lanfear:
Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR. 1238 - Sarmela Raja Sekaran, Ying-Han Pang, Goh Fan Ling, Shih Yin Ooi:
MSTCN: A multiscale temporal convolutional network for user independent human activity recognition. 1261 - Nurulhuda Mustafa, Lew Sook Ling, Siti Fatimah Abdul Razak:
Customer churn prediction for telecommunication industry: A Malaysian Case Study. 1274 - Palanichamy Naveen, Su-Cheng Haw, Subramanian S, Kuhaneswaran Govindasamy, Rishanti Murugan:
Prediction of PM2.5 concentrations in Malaysia using machine learning techniques: a review. 1279 - Chockalingam Palanisamy, Hong Kiat Aaron Tay Hong Kiat:
Experimental study and modeling the tensile strength of 3D-printed aluminium polylactic acid (PLA) parts using artificial neural networks. 1286 - Gavin Reddick, Dmitry Malkov, Beverley Sherbon, Jonathan Grant:
Understanding the funding characteristics of research impact: A proof-of-concept study linking REF 2014 impact case studies with Researchfish grant agreements. 1291 - Siddeshappa Nandish, Tejashri Varur, Krithika Subramani, Siddhi Puranik, Niranjana Sampathila:
X-ray versus computerized tomography (CT) images for detection of COVID-19 using deep learning. 1292 - Md. Shabiul Islam, Most Tahamina Khatoon, Kazy Noor-e-Alam Siddiquee, Wong Hin Yong, Mohammad Nurul Huda:
Performance Analysis of Simulated Annealing and Genetic Algorithm on systems of linear equations. 1297
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