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ORCIDJakub Truszkowski
2020 – today
- 2025
[i8]Shailik Sarkar, Raquib Bin Yousuf, Linhan Wang, Brian Mayer, Thomas Mortier, Victor Deklerck, Jakub Truszkowski, John Simeone, Marigold Norman, Jade Saunders, Chang-Tien Lu, Naren Ramakrishnan:
Chasing the Timber Trail: Machine Learning to Reveal Harvest Location Misrepresentation. CoRR abs/2502.14115 (2025)- [i7]Raquib Bin Yousuf, Hoang Anh Just, Shengzhe Xu, Brian Mayer, Victor Deklerck, Jakub Truszkowski, John Simeone, Jade Saunders, Chang-Tien Lu, Ruoxi Jia, Naren Ramakrishnan:
Optimizing Product Provenance Verification using Data Valuation Methods. CoRR abs/2502.15177 (2025) - 2021
- [j7]Nicola De Maio
, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman:
A phylogenetic approach for weighting genetic sequences. BMC Bioinform. 22(1): 285 (2021) - [j6]Gábor Lugosi, Jakub Truszkowski, Vasiliki Velona, Piotr Zwiernik:
Learning partial correlation graphs and graphical models by covariance queries. J. Mach. Learn. Res. 22: 203:1-203:41 (2021) - 2020
- [c7]Xin Lian, Kshitij Jain, Jakub Truszkowski, Pascal Poupart, Yaoliang Yu:
Unsupervised Multilingual Alignment using Wasserstein Barycenter. IJCAI 2020: 3702-3708 - [i6]Jakub Truszkowski, Céline Scornavacca, Fabio Pardi:
Computing the probability of gene trees concordant with the species tree in the multispecies coalescent. CoRR abs/2001.06741 (2020) - [i5]Xin Lian, Kshitij Jain, Jakub Truszkowski, Pascal Poupart, Yaoliang Yu:
Unsupervised Multilingual Alignment using Wasserstein Barycenter. CoRR abs/2002.00743 (2020)
2010 – 2019
- 2019
- [c6]Jakub Truszkowski, Olivier Gascuel, Krister M. Swenson:
Rapidly Computing the Phylogenetic Transfer Index. WABI 2019: 20:1-20:12 - [i4]Gábor Lugosi, Jakub Truszkowski, Vasiliki Velona, Piotr Zwiernik:
Structure learning in graphical models by covariance queries. CoRR abs/1906.09501 (2019) - 2016
- [r1]Olivier Gascuel, Fabio Pardi, Jakub Truszkowski:
Distance-Based Phylogeny Reconstruction: Safety and Edge Radius. Encyclopedia of Algorithms 2016: 567-571 - 2013
- [b1]Jakub Truszkowski:
Fast Algorithms for Large-Scale Phylogenetic Reconstruction. University of Waterloo, Ontario, Canada, 2013 - [j5]Daniel G. Brown, Jakub Truszkowski:
Fast error-tolerant quartet phylogeny algorithms. Theor. Comput. Sci. 483: 104-114 (2013) - [c5]Daniel G. Brown, Jakub Truszkowski:
LSHPlace: Fast Phylogenetic Placement Using Locality-Sensitive Hashing. Pacific Symposium on Biocomputing 2013: 310-319 - 2012
- [j4]Jakub Truszkowski, Yanqi Hao, Daniel G. Brown:
Towards a practical O(n log n) phylogeny algorithm. Algorithms Mol. Biol. 7: 32 (2012) - [j3]Andre P. Masella, Andrea K. Bartram, Jakub Truszkowski, Daniel Gregory Brown, Josh D. Neufeld:
PANDAseq: paired-end assembler for illumina sequences. BMC Bioinform. 13: 31 (2012) - [c4]Daniel Gregory Brown, Jakub Truszkowski:
Fast Phylogenetic Tree Reconstruction Using Locality-Sensitive Hashing. WABI 2012: 14-29 - [i3]Farheen Omar, Mathieu Sinn, Jakub Truszkowski, Pascal Poupart, James Yungjen Tung, Allen Caine:
Comparative Analysis of Probabilistic Models for Activity Recognition with an Instrumented Walker. CoRR abs/1203.3500 (2012) - 2011
- [j2]Jakub Truszkowski, Daniel Gregory Brown:
More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMs. BMC Bioinform. 12: 168 (2011) - [c3]Daniel Gregory Brown, Jakub Truszkowski:
Fast Error-Tolerant Quartet Phylogeny Algorithms. CPM 2011: 147-161 - [c2]Daniel G. Brown, Jakub Truszkowski:
Towards a Practical O(n logn) Phylogeny Algorithm. WABI 2011: 14-25 - [i2]Daniel G. Brown, Jakub Truszkowski:
Fast reconstruction of phylogenetic trees using locally-sensitive hashing. CoRR abs/1111.0379 (2011) - 2010
- [j1]Daniel G. Brown, Jakub Truszkowski:
New decoding algorithms for Hidden Markov Models using distance measures on labellings. BMC Bioinform. 11(S-1): 40 (2010) - [c1]Farheen Omar, Mathieu Sinn, Jakub Truszkowski, Pascal Poupart, James Yungjen Tung, Allen Caine:
Comparative Analysis of Probabilistic Models for Activity Recognition with an Instrumented Walker. UAI 2010: 392-400 - [i1]Daniel Gregory Brown, Jakub Truszkowski:
Fast error-tolerant quartet phylogeny algorithms. CoRR abs/1010.1866 (2010)
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