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ORCIDJean-Loup Faulon
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2010 – 2019
- 2019
[j30]Thomas Duigou
, Melchior du Lac, Pablo Carbonell, Jean-Loup Faulon:
RetroRules: a database of reaction rules for engineering biology. Nucleic Acids Res. 47(Database-Issue): D1229-D1235 (2019)- 2018
- [j29]Pablo Carbonell, Jerry Wong, Neil Swainston, Eriko Takano, Nicholas J. Turner, Nigel S. Scrutton, Douglas B. Kell, Rainer Breitling, Jean-Loup Faulon:
Selenzyme: enzyme selection tool for pathway design. Bioinform. 34(12): 2153-2154 (2018) - [j28]Neil Swainston, Mark Dunstan, Adrian J. Jervis, Christopher J. Robinson, Pablo Carbonell, Alan R. Williams, Jean-Loup Faulon, Nigel S. Scrutton, Douglas B. Kell:
PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts. Bioinform. 34(13): 2327-2329 (2018) - 2017
- [j27]Mathilde Koch, Thomas Duigou, Pablo Carbonell, Jean-Loup Faulon:
Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0. J. Cheminformatics 9(1): 64:1-64:17 (2017) - 2016
- [j26]Baudoin Delépine, Vincent Libis, Pablo Carbonell, Jean-Loup Faulon:
SensiPath: computer-aided design of sensing-enabling metabolic pathways. Nucleic Acids Res. 44(Webserver-Issue): W226-W231 (2016) - 2014
- [j25]Cyrille Pauthenier, Jean-Loup Faulon:
PrecisePrimer: an easy-to-use web server for designing PCR primers for DNA library cloning and DNA shuffling. Nucleic Acids Res. 42(Webserver-Issue): 205-209 (2014) - [j24]Pablo Carbonell, Pierre Parutto, Joan Hérisson, Shashi Bhushan Pandit, Jean-Loup Faulon:
XTMS: pathway design in an eXTended metabolic space. Nucleic Acids Res. 42(Webserver-Issue): 389-394 (2014) - [c6]Baudoin Delépine, Pablo Carbonell, Jean-Loup Faulon:
XTMS in Action: Retrosynthetic Design in the Extended Metabolic Space of Heterologous Pathways for High-Value Compounds. CMSB 2014: 256-259 - 2013
- [j23]Jaewook Joo, Steven J. Plimpton, Jean-Loup Faulon:
Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-κ. BMC Syst. Biol. 7: 45 (2013) - [j22]Pablo Carbonell, Lars Carlsson, Jean-Loup Faulon:
Stereo Signature Molecular Descriptor. J. Chem. Inf. Model. 53(4): 887-897 (2013) - [c5]Mohammad Mahdi Jaghoori, Sung-Shik T. Q. Jongmans, Frank S. de Boer, Julio E. Peironcely, Jean-Loup Faulon, Theo H. Reijmers, Thomas Hankemeier:
PMG: Multi-core Metabolite Identification. CS2Bio 2013: 53-60 - 2012
- [j21]Pablo Carbonell, Davide Fichera, Shashi Bhushan Pandit, Jean-Loup Faulon:
Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms. BMC Syst. Biol. 6: 10 (2012) - [j20]Jörg K. Wegner, Aaron D. Sterling, Rajarshi Guha, Andreas Bender, Jean-Loup Faulon, Janna Hastings, Noel M. O'Boyle, John P. Overington, Herman van Vlijmen, Egon L. Willighagen:
Cheminformatics. Commun. ACM 55(11): 65-75 (2012) - [j19]Julio E. Peironcely, Miguel Rojas-Chertó, Davide Fichera, Theo H. Reijmers, Leon Coulier, Jean-Loup Faulon, Thomas Hankemeier:
OMG: open molecule generator. J. Cheminformatics 4: 21 (2012) - 2011
- [j18]Pablo Carbonell, Anne-Gaëlle Planson, Davide Fichera, Jean-Loup Faulon:
A retrosynthetic biology approach to metabolic pathway design for therapeutic production. BMC Syst. Biol. 5: 122 (2011) - 2010
- [j17]Genetha A. Gray, Pamela J. Williams, W. Michael Brown, Jean-Loup Faulon, Kenneth L. Sale:
Disparate data fusion for protein phosphorylation prediction. Ann. Oper. Res. 174(1): 219-235 (2010) - [j16]Pablo Carbonell, Jean-Loup Faulon:
Molecular signatures-based prediction of enzyme promiscuity. Bioinform. 26(16): 2012-2019 (2010)
2000 – 2009
- 2008
- [j15]Jean-Loup Faulon, Milind Misra, Shawn Martin, Ken Sale, Rajat Sapra:
Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor. Bioinform. 24(2): 225-233 (2008) - 2007
- [j14]Shawn Martin, Zhaoduo Zhang, Anthony Martino, Jean-Loup Faulon:
Boolean dynamics of genetic regulatory networks inferred from microarray time series data. Bioinform. 23(7): 866-874 (2007) - 2006
- [j13]W. Michael Brown, Shawn Martin, Mark D. Rintoul, Jean-Loup Faulon:
Designing Novel Polymers with Targeted Properties Using the Signature Molecular Descriptor. J. Chem. Inf. Model. 46(2): 826-835 (2006) - 2005
- [j12]Shawn Martin, Diana C. Roe, Jean-Loup Faulon:
Predicting protein-protein interactions using signature products. Bioinform. 21(2): 218-226 (2005) - [j11]W. Michael Brown, Jean-Loup Faulon, Ken Sale:
A deterministic algorithm for constrained enumeration of transmembrane protein folds. Comput. Biol. Chem. 29(2): 143-150 (2005) - [j10]Jean-Loup Faulon, W. Michael Brown, Shawn Martin:
Reverse engineering chemical structures from molecular descriptors: how many solutions? J. Comput. Aided Mol. Des. 19(9-10): 637-650 (2005) - [c4]Shawn Martin, W. Michael Brown, Jean-Loup Faulon, Derick C. Weis, Donald P. Visco:
Inverse Design of Large Molecules using Linear Diophantine Equations. CSB Workshops 2005: 11-16 - 2004
- [j9]Jean-Loup Faulon, Michael J. Collins, Robert D. Carr:
The Signature Molecular Descriptor. 4. Canonizing Molecules Using Extended Valence Sequences. J. Chem. Inf. Model. 44(2): 427-436 (2004) - [c3]Shawn Martin, George Davidson, Elebeoba E. May, Jean-Loup Faulon, Margaret Werner-Washburne:
Inferring Genetic Networks from Microarray Data. CSB 2004: 566-569 - [c2]Jean-Loup Faulon, Shawn Martin, Robert D. Carr:
Dynamical Robustness in Gene Regulatory Networks. CSB 2004: 626-627 - 2003
- [j8]Jean-Loup Faulon, Donald P. Visco Jr., Ramdas S. Pophale:
The Signature Molecular Descriptor. 1. Using Extended Valence Sequences in QSAR and QSPR Studies. J. Chem. Inf. Comput. Sci. 43(3): 707-720 (2003) - [j7]Jean-Loup Faulon, Carla J. Churchwell, Donald P. Visco Jr.:
The Signature Molecular Descriptor. 2. Enumerating Molecules from Their Extended Valence Sequences. J. Chem. Inf. Comput. Sci. 43(3): 721-734 (2003) - 2001
- [j6]Jean-Loup Faulon:
Stochastic generator of chemical structure. 4. Building polymeric systems with specified properties. J. Comput. Chem. 22(6): 580-590 (2001) - [j5]Jean-Loup Faulon, Allen G. Sault:
Stochastic Generator of Chemical Structure. 3. Reaction Network Generation. J. Chem. Inf. Comput. Sci. 41(4): 894-908 (2001)
1990 – 1999
- 1998
- [j4]Jean-Loup Faulon:
Isomorphism, Automorphism Partitioning, and Canonical Labeling Can Be Solved in Polynomial-Time for Molecular Graphs. J. Chem. Inf. Comput. Sci. 38(3): 432-444 (1998) - 1997
- [c1]Jean-Loup Faulon, J. David Hobbs, David M. Ford, Robert T. Wilcox:
Massively Parallel Simulations of Diffusion in Dense Polymeric Structures. SC 1997: 34 - 1996
- [j3]Jean-Loup Faulon:
Stochastic Generator of Chemical Structure, 2. Using Simulated Annealing To Search the Space of Constitutional Isomers. J. Chem. Inf. Comput. Sci. 36(4): 731-740 (1996) - 1994
- [j2]Jean-Loup Faulon:
Stochastic Generator of Chemical Structure. 1. Application to the Structure Elucidation of Large Molecules. J. Chem. Inf. Comput. Sci. 34(5): 1204-1218 (1994) - 1992
- [j1]Jean-Loup Faulon:
On using graph-equivalent classes for the structure elucidation of large molecules. J. Chem. Inf. Comput. Sci. 32(4): 338-348 (1992)
Coauthor Index
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