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2020 – today
- 2023
[j15]Zhitao Mao
, Qianqian Yuan, Haoran Li, Yue Zhang, Yuanyuan Huang, Chunhe Yang, Ruoyu Wang, Yongfu Yang, Yalun Wu, Shihui Yang, Xiaoping Liao, Hongwu Ma:
CAVE: a cloud-based platform for analysis and visualization of metabolic pathways. Nucleic Acids Res. 51(W1): 70-77 (2023)- 2022
- [j14]Yi Yang, Yufeng Mao, Ruoyu Wang, Haoran Li, Ye Liu, Haijiao Cheng, Zhenkun Shi, Yu Wang, Meng Wang, Ping Zheng, Xiaoping Liao, Hongwu Ma:
AutoESD: a web tool for automatic editing sequence design for genetic manipulation of microorganisms. Nucleic Acids Res. 50(W1): 75-82 (2022) - [j13]Zhitao Mao, Ruoyu Wang, Haoran Li, Yixin Huang, Qiang Zhang, Xiaoping Liao, Hongwu Ma:
ERMer: a serverless platform for navigating, analyzing, and visualizing Escherichia coli regulatory landscape through graph database. Nucleic Acids Res. 50(W1): 298-304 (2022) - [i1]Zhenkun Shi, Qianqian Yuan, Ruoyu Wang, Hoaran Li, Xiaoping Liao, Hongwu Ma:
ECRECer: Enzyme Commission Number Recommendation and Benchmarking based on Multiagent Dual-core Learning. CoRR abs/2202.03632 (2022)
2010 – 2019
- 2015
- [j12]Larisa Kiseleva, Sofya K. Garushyants, Hongwu Ma, David J. W. Simpson, Viatcheslav Fedorovich, Michael F. Cohen, Igor Goryanin:
Taxonomic and functional metagenomic analysis of anodic communities in two pilot-scale microbial fuel cells treating different industrial wastewaters. J. Integr. Bioinform. 12(3) (2015) - 2013
- [j11]Zhe Liu, Hongwu Ma, Igor Goryanin:
A semi-automated genome annotation comparison and integration scheme. BMC Bioinform. 14: 172 (2013) - 2010
- [j10]Tong Hao, Hongwu Ma, Xue-Ming Zhao, Igor Goryanin:
Compartmentalization of the Edinburgh Human Metabolic Network. BMC Bioinform. 11: 393 (2010)
2000 – 2009
- 2009
- [c2]Jiri Barnat, Lubos Brim, Ivana Cerná, Sven Drazan, Jana Fabriková, Jan Láník, David Safránek, Hongwu Ma:
BioDiVinE: A Framework for Parallel Analysis of Biological Models. COMPMOD 2009: 31-45 - 2008
- [j9]Marcio Rosa da Silva, Hongwu Ma, An-Ping Zeng:
Centrality, Network Capacity, and Modularity as Parameters to Analyze the Core-Periphery Structure in Metabolic Networks. Proc. IEEE 96(8): 1411-1420 (2008) - 2007
- [j8]Qingzhao Wang, Yudi Yang, Hongwu Ma, Xue-Ming Zhao:
Metabolic network properties help assign weights to elementary modes to understand physiological flux distributions. Bioinform. 23(9): 1049-1052 (2007) - [j7]Yizhi Cai, Bryony Davidson, Hongwu Ma, Chris French:
Modeling the arsenic biosensor system. BMC Syst. Biol. 1(S-1): P83 (2007) - [j6]Chris French, Judith Nicholson, Farid Bizzari, Jelena Aleksic, Yizhi Cai, Sreemati Seshasayee, Sergii Ivakhno, Bryony Davidson, Jen Wilson, Kim de Mora, Hongwu Ma, Laszlo Kozma-Bognar, Alistair Elfick:
Arsenic biosenseor: a step further. BMC Syst. Biol. 1(S-1): S11 (2007) - 2006
- [j5]Tim Van den Bulcke, Koen Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, Kathleen Marchal:
SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms. BMC Bioinform. 7: 43 (2006) - 2004
- [j4]Hongwu Ma, Xue-Ming Zhao, Ying-Jin Yuan, An-Ping Zeng:
Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph. Bioinform. 20(12): 1870-1876 (2004) - [j3]Hongwu Ma, Jan Buer, An-Ping Zeng:
Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach. BMC Bioinform. 5: 199 (2004) - 2003
- [j2]Hongwu Ma, An-Ping Zeng:
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinform. 19(2): 270-277 (2003) - [j1]Hongwu Ma, An-Ping Zeng:
The Connectivity Structure, Giant Strong Component and Centrality of Metabolic Networks. Bioinform. 19(11): 1423-1430 (2003) - 2001
- [c1]Hongwu Ma, Xiaofeng Guo, Xue-Ming Zhao:
Pathway Analysis of Bacillus subtillis Metabolic Network Based on Genomic Information. German Conference on Bioinformatics 2001: 16-20
Coauthor Index
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