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2020 – today
- 2023
[j10]Nikolai Romashchenko
, Benjamin Linard, Fabio Pardi, Eric Rivals:
EPIK: precise and scalable evolutionary placement with informative k-mers. Bioinform. 39(12) (2023)- [j9]Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi:
Computing Phylo-$k$k-Mers. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 2889-2897 (2023) - 2022
- [j8]Yannis Nevers, Tamsin E. M. Jones, Dushyanth Jyothi, Bethan Yates, Meritxell Ferret, Laura Portell-Silva, Laia Codó, Salvatore Cosentino, Marina Marcet-Houben, Anna Vlasova, Laetitia Poidevin, Arnaud Kress, Mark Hickman, Emma Persson, Ivana Pilizota, Cristina Guijarro-Clarke, Adrian M. Altenhoff, Elspeth A. Bruford, Christophe Dessimoz, Ingo Ebersberger, David M. Emms, Toni Gabaldón, Natasha M. Glover, Yanhui Hu, Wataru Iwasaki, Odile Lecompte, Benjamin Linard, María J. Martín, David S. Roos, Erik Sonhammer, Paul D. Thomas, David Thybert, Klaas Vandepoele, Salvador Capella-Gutiérrez, Asier Gonzalez-Uriarte, Javier Garrayo-Ventas, Dmitry Repchevsky, Vicky Sundesha, Erik L. L. Sonnhammer:
The Quest for Orthologs orthology benchmark service in 2022. Nucleic Acids Res. 50(W1): 623-632 (2022) - 2021
- [j7]Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals:
PEWO: a collection of workflows to benchmark phylogenetic placement. Bioinform. 36(21): 5264-5266 (2021) - [j6]Guillaume E. Scholz, Benjamin Linard, Nikolai Romashchenko, Eric Rivals, Fabio Pardi:
Rapid screening and detection of inter-type viral recombinants using phylo-k-mers. Bioinform. 36(22-23): 5351-5360 (2021)
2010 – 2019
- 2019
- [j5]Benjamin Linard, Krister M. Swenson, Fabio Pardi:
Rapid alignment-free phylogenetic identification of metagenomic sequences. Bioinform. 35(18): 3303-3312 (2019) - [j4]Yannis Nevers, Arnaud Kress, Audrey Defosset, Raymond Ripp, Benjamin Linard, Julie Dawn Thompson, Olivier Poch, Odile Lecompte:
OrthoInspector 3.0: open portal for comparative genomics. Nucleic Acids Res. 47(Database-Issue): D411-D418 (2019) - 2015
- [j3]Benjamin Linard, Alexis Allot, Raphael Schneider, Can Morel, Raymond Ripp, Marc Bigler, Julie Dawn Thompson, Olivier Poch, Odile Lecompte:
OrthoInspector 2.0: Software and database updates. Bioinform. 31(3): 447-448 (2015) - 2012
- [b1]Benjamin Linard:
Development of evolutionary knowledge extraction methods and their application in biological complex systems. (Développement de méthodes évolutionnaires d'extraction de connaissance et application à des systèmes biologiques complexes). University of Strasbourg, France, 2012 - [j2]Tien-Dao Luu, Alin Rusu, Vincent Walter, Benjamin Linard, Laetitia Poidevin, Raymond Ripp, Luc Moulinier, Jean Muller, Wolfgang Raffelsberger, Nicolas Wicker, Odile Lecompte, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen:
KD4v: comprehensible knowledge discovery system for missense variant. Nucleic Acids Res. 40(Web-Server-Issue): 71-75 (2012) - 2011
- [j1]Benjamin Linard, Julie Dawn Thompson, Olivier Poch, Odile Lecompte:
OrthoInspector: comprehensive orthology analysis and visual exploration. BMC Bioinform. 12: 11 (2011)
Coauthor Index
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