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2020 – today
- 2024
[j35]Jorge Novoa, Javier López-Ibáñez, Monica Chagoyen
, Juan Antonio Garcia-Ranea, Florencio Pazos:
CoMentG: comprehensive retrieval of generic relationships between biomedical concepts from the scientific literature. Database J. Biol. Databases Curation 2024 (2024)- 2023
- [j34]Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen:
MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis. Nucleic Acids Res. 51(W1): 305-309 (2023) - 2021
- [j33]Borja Pitarch, Juan A. G. Ranea, Florencio Pazos:
Protein residues determining interaction specificity in paralogous families. Bioinform. 37(8): 1076-1082 (2021) - [j32]Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen:
Predicting biological pathways of chemical compounds with a profile-inspired approach. BMC Bioinform. 22(1): 320 (2021)
2010 – 2019
- 2019
- [j31]Florencio Pazos, Monica Chagoyen:
Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology. Briefings Bioinform. 20(4): 1329-1336 (2019) - [j30]Javier López-Ibáñez, Laura T. Martín, Monica Chagoyen, Florencio Pazos:
Bacterial Feature Finder (BaFF) - a system for extracting features overrepresented in sets of prokaryotic organisms. Bioinform. 35(18): 3482-3483 (2019) - 2018
- [j29]Diego Garrido-Martín, Florencio Pazos:
Effect of the sequence data deluge on the performance of methods for detecting protein functional residues. BMC Bioinform. 19(1): 67:1-67:9 (2018) - 2017
- [j28]Sara González-Pérez, Florencio Pazos, Monica Chagoyen:
Factors affecting interactome-based prediction of human genes associated with clinical signs. BMC Bioinform. 18(1): 340 (2017) - 2016
- [j27]Monica Chagoyen, Juan A. García-Martín, Florencio Pazos:
Practical analysis of specificity-determining residues in protein families. Briefings Bioinform. 17(2): 255-261 (2016) - [j26]Monica Chagoyen, Florencio Pazos:
Characterization of clinical signs in the human interactome. Bioinform. 32(12): 1761-1765 (2016) - [j25]Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen:
MBROLE 2.0 - functional enrichment of chemical compounds. Nucleic Acids Res. 44(Webserver-Issue): W201-W204 (2016) - [j24]Juan C. Oliveros, Mònica Franch, Daniel Tabas-Madrid, David San-León, Lluis Montoliu, Pilar Cubas, Florencio Pazos:
Breaking-Cas - interactive design of guide RNAs for CRISPR-Cas experiments for ENSEMBL genomes. Nucleic Acids Res. 44(Webserver-Issue): W267-W271 (2016) - 2015
- [j23]David Ochoa, David de Juan, Alfonso Valencia, Florencio Pazos:
Detection of significant protein coevolution. Bioinform. 31(13): 2166-2173 (2015) - 2013
- [j22]Monica Chagoyen, Florencio Pazos:
Tools for the functional interpretation of metabolomic experiments. Briefings Bioinform. 14(6): 737-744 (2013) - [j21]Daniel Lopez, Florencio Pazos:
COPRED: prediction of fold, GO molecular function and functional residues at the domain level. Bioinform. 29(14): 1811-1812 (2013) - [j20]Daniel Lopez, Florencio Pazos:
Concomitant prediction of function and fold at the domain level with GO-based profiles. BMC Bioinform. 14(S-3): S12 (2013) - 2012
- [j19]Thilo Muth, Juan A. García-Martín, Antonio Rausell, David de Juan, Alfonso Valencia, Florencio Pazos:
JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures. Bioinform. 28(4): 584-586 (2012) - [j18]Natalia Pietrosemoli, Daniel Lopez, Aldo Segura-Cabrera, Florencio Pazos:
Computational Prediction of Important Regions in Protein Sequences [Life Sciences]. IEEE Signal Process. Mag. 29(6): 143-147 (2012) - 2011
- [j17]Monica Chagoyen, Florencio Pazos:
MBRole: enrichment analysis of metabolomic data. Bioinform. 27(5): 730-731 (2011) - [j16]Dorota Herman, David Ochoa, David de Juan, Daniel Lopez, Alfonso Valencia, Florencio Pazos:
Selection of organisms for the co-evolution-based study of protein interactions. BMC Bioinform. 12: 363 (2011) - 2010
- [j15]Monica Chagoyen, Florencio Pazos:
Quantifying the biological significance of gene ontology biological processes - implications for the analysis of systems-wide data. Bioinform. 26(3): 378-384 (2010) - [j14]David Ochoa, Florencio Pazos:
Studying the co-evolution of protein families with the Mirrortree web server. Bioinform. 26(10): 1370-1371 (2010) - [j13]Juan C. Triviño, Florencio Pazos:
Quantitative global studies of reactomes and metabolomes using a vectorial representation of reactions and chemical compounds. BMC Syst. Biol. 4: 46 (2010)
2000 – 2009
- 2008
- [j12]José M. G. Izarzugaza, David de Juan, Carles Pons, Florencio Pazos, Alfonso Valencia:
Enhancing the prediction of protein pairings between interacting families using orthology information. BMC Bioinform. 9 (2008) - [j11]Angela del Pozo, Florencio Pazos, Alfonso Valencia:
Defining functional distances over Gene Ontology. BMC Bioinform. 9 (2008) - [p1]Alfonso Valencia, Florencio Pazos:
Computational Methods to Predict Protein Interaction Partners. Protein-protein Interactions and Networks 2008: 67-81 - 2006
- [j10]Florencio Pazos, Antonio Rausell, Alfonso Valencia:
Phylogeny-independent detection of functional residues. Bioinform. 22(12): 1440-1448 (2006) - [j9]Angel Carro, Michael L. Tress, David de Juan, Florencio Pazos, Pedro Lopez-Romero, Antonio del Sol, Alfonso Valencia, Ana María Rojas:
TreeDet: a web server to explore sequence space. Nucleic Acids Res. 34(Web-Server-Issue): 110-115 (2006) - [j8]José M. G. Izarzugaza, David de Juan, Carles Pons, Juan A. G. Ranea, Alfonso Valencia, Florencio Pazos:
TSEMA: interactive prediction of protein pairings between interacting families. Nucleic Acids Res. 34(Web-Server-Issue): 315-319 (2006) - 2005
- [j7]Florencio Pazos, David Guijas, Alfonso Valencia, Victor de Lorenzo:
MetaRouter: bioinformatics for bioremediation. Nucleic Acids Res. 33(Database-Issue): 588-592 (2005) - [j6]Osvaldo Graña, Volker A. Eyrich, Florencio Pazos, Burkhard Rost, Alfonso Valencia:
EVAcon: a protein contact prediction evaluation service. Nucleic Acids Res. 33(Web-Server-Issue): 347-351 (2005) - [j5]Manuel J. Gómez, Ramón Alonso-Allende, Florencio Pazos, Osvaldo Graña, David de Juan, Alfonso Valencia:
Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories. Trans. Comp. Sys. Biology 1: 1-13 (2005) - 2004
- [c3]Florencio Pazos, David Guijas, Manuel J. Gómez, Almudena Trigo, Victor de Lorenzo, Alfonso Valencia:
The Biodegradation Network, a New Scenario for Computational Systems Biology Research. CMSB 2004: 252-256 - [c2]Alireza Tamaddoni-Nezhad, Antonis C. Kakas, Stephen H. Muggleton, Florencio Pazos:
Modelling Inhibition in Metabolic Pathways Through Abduction and Induction. ILP 2004: 305-322 - 2003
- [j4]Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost:
EVA: evaluation of protein structure prediction servers. Nucleic Acids Res. 31(13): 3311-3315 (2003) - 2001
- [j3]Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost:
EVA: continuous automatic evaluation of protein structure prediction servers. Bioinform. 17(12): 1242-1243 (2001)
1990 – 1999
- 1999
- [j2]Florencio Pazos, Burkhard Rost, Alfonso Valencia:
A platform for integrating threading results with protein family analyses. Bioinform. 15(12): 1062-1063 (1999) - 1997
- [j1]Florencio Pazos, O. Olmea, Alfonso Valencia:
A graphical interface for correlated mutations and other protein structure prediction methods. Comput. Appl. Biosci. 13(3): 319-321 (1997) - [c1]Florencio Pazos, Luis Sánchez-Pulido, Juan Antonio Garcia-Ranca, Miguel A. Andrade, Silvia Atrian, Alfonso Valencia:
Comparative Analysis of Different Methods for the Detection of Specificity Regions in Protein Families. BCEC 1997: 132-145
Coauthor Index
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