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ORCIDNaoto Usuyama
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2020 – today
- 2024
[i19]Ho Hin Lee, Yu Gu, Theodore Zhao, Yanbo Xu, Jianwei Yang, Naoto Usuyama, Cliff Wong, Mu Wei, Bennett A. Landman, Yuankai Huo, Alberto Santamaría-Pang, Hoifung Poon:
Foundation Models for Biomedical Image Segmentation: A Survey. CoRR abs/2401.07654 (2024)- [i18]Juan Manuel Zambrano Chaves, Shih-Cheng Huang, Yanbo Xu, Hanwen Xu, Naoto Usuyama, Sheng Zhang, Fei Wang, Yujia Xie, Mahmoud Khademi, Ziyi Yang, Hany Hassan Awadalla, Julia Gong, Houdong Hu, Jianwei Yang, Chunyuan Li, Jianfeng Gao, Yu Gu, Cliff Wong, Mu Wei, Tristan Naumann, Muhao Chen, Matthew P. Lungren, Serena Yeung-Levy, Curtis P. Langlotz, Sheng Wang, Hoifung Poon:
Training Small Multimodal Models to Bridge Biomedical Competency Gap: A Case Study in Radiology Imaging. CoRR abs/2403.08002 (2024) - [i17]Theodore Zhao, Yu Gu, Jianwei Yang, Naoto Usuyama, Ho Hin Lee, Tristan Naumann, Jianfeng Gao, Angela Crabtree, Jacob Abel, Christine Moung, Brian Piening, Carlo Bifulco, Mu Wei, Hoifung Poon, Sheng Wang:
BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once. CoRR abs/2405.12971 (2024) - 2023
- [j6]Sam Preston, Mu Wei, Rajesh Rao, Robert Tinn, Naoto Usuyama, Michael Lucas, Yu Gu, Roshanthi Weerasinghe, Soohee Lee, Brian Piening, Paul Tittel, Naveen Valluri, Tristan Naumann, Carlo Bifulco, Hoifung Poon:
Toward structuring real-world data: Deep learning for extracting oncology information from clinical text with patient-level supervision. Patterns 4(4): 100726 (2023) - [j5]Robert Tinn, Hao Cheng, Yu Gu, Naoto Usuyama, Xiaodong Liu, Tristan Naumann
, Jianfeng Gao, Hoifung Poon:
Fine-tuning large neural language models for biomedical natural language processing. Patterns 4(4): 100729 (2023) - [j4]Fangyu Liu, Qianchu Liu, Shruthi Bannur, Fernando Pérez-García, Naoto Usuyama, Sheng Zhang, Tristan Naumann, Aditya V. Nori, Hoifung Poon, Javier Alvarez-Valle, Ozan Oktay, Stephanie L. Hyland:
Compositional Zero-Shot Domain Transfer with Text-to-Text Models. Trans. Assoc. Comput. Linguistics 11: 1097-1113 (2023) - [c7]Qianchu Liu, Stephanie L. Hyland, Shruthi Bannur, Kenza Bouzid, Daniel C. Castro, Maria Wetscherek, Robert Tinn, Harshita Sharma, Fernando Pérez-García, Anton Schwaighofer, Pranav Rajpurkar, Sameer Tajdin Khanna, Hoifung Poon, Naoto Usuyama, Anja Thieme, Aditya V. Nori, Matthew P. Lungren, Ozan Oktay, Javier Alvarez-Valle:
Exploring the Boundaries of GPT-4 in Radiology. EMNLP 2023: 14414-14445 - [c6]Cliff Wong, Sheng Zhang, Yu Gu, Christine Moung, Jacob Abel, Naoto Usuyama, Roshanthi Weerasinghe, Brian Piening, Tristan Naumann, Carlo Bifulco, Hoifung Poon:
Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology. MLHC 2023: 846-862 - [c5]Chunyuan Li, Cliff Wong, Sheng Zhang, Naoto Usuyama, Haotian Liu, Jianwei Yang, Tristan Naumann, Hoifung Poon, Jianfeng Gao:
LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One Day. NeurIPS 2023 - [i16]Sheng Zhang, Yanbo Xu, Naoto Usuyama, Jaspreet Bagga, Robert Tinn, Sam Preston, Rajesh Rao, Mu Wei, Naveen Valluri, Cliff Wong, Matthew P. Lungren, Tristan Naumann, Hoifung Poon:
Large-Scale Domain-Specific Pretraining for Biomedical Vision-Language Processing. CoRR abs/2303.00915 (2023) - [i15]Fangyu Liu, Qianchu Liu, Shruthi Bannur, Fernando Pérez-García, Naoto Usuyama, Sheng Zhang, Tristan Naumann, Aditya V. Nori, Hoifung Poon, Javier Alvarez-Valle, Ozan Oktay, Stephanie L. Hyland:
Compositional Zero-Shot Domain Transfer with Text-to-Text Models. CoRR abs/2303.13386 (2023) - [i14]Chunyuan Li, Cliff Wong, Sheng Zhang, Naoto Usuyama, Haotian Liu, Jianwei Yang, Tristan Naumann, Hoifung Poon, Jianfeng Gao:
LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One Day. CoRR abs/2306.00890 (2023) - [i13]Yu Gu, Sheng Zhang, Naoto Usuyama, Yonas Woldesenbet, Cliff Wong, Praneeth Sanapathi, Mu Wei, Naveen Valluri, Erika Strandberg, Tristan Naumann, Hoifung Poon:
Distilling Large Language Models for Biomedical Knowledge Extraction: A Case Study on Adverse Drug Events. CoRR abs/2307.06439 (2023) - [i12]Cliff Wong, Sheng Zhang, Yu Gu, Christine Moung, Jacob Abel, Naoto Usuyama, Roshanthi Weerasinghe, Brian Piening, Tristan Naumann, Carlo Bifulco, Hoifung Poon:
Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology. CoRR abs/2308.02180 (2023) - [i11]Yu Gu, Jianwei Yang, Naoto Usuyama, Chunyuan Li, Sheng Zhang, Matthew P. Lungren, Jianfeng Gao, Hoifung Poon:
BiomedJourney: Counterfactual Biomedical Image Generation by Instruction-Learning from Multimodal Patient Journeys. CoRR abs/2310.10765 (2023) - [i10]Qianchu Liu, Stephanie L. Hyland, Shruthi Bannur, Kenza Bouzid, Daniel C. Castro, Maria Teodora Wetscherek, Robert Tinn, Harshita Sharma, Fernando Pérez-García, Anton Schwaighofer, Pranav Rajpurkar, Sameer Tajdin Khanna, Hoifung Poon, Naoto Usuyama, Anja Thieme, Aditya V. Nori, Matthew P. Lungren, Ozan Oktay, Javier Alvarez-Valle:
Exploring the Boundaries of GPT-4 in Radiology. CoRR abs/2310.14573 (2023) - [i9]Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolò Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Christopher M. White, Eric Horvitz:
Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine. CoRR abs/2311.16452 (2023) - [i8]Wenhui Wang, Shuming Ma, Hanwen Xu, Naoto Usuyama, Jiayu Ding, Hoifung Poon, Furu Wei:
When an Image is Worth 1, 024 x 1, 024 Words: A Case Study in Computational Pathology. CoRR abs/2312.03558 (2023) - 2022
- [j3]Yu Gu, Robert Tinn, Hao Cheng, Michael Lucas, Naoto Usuyama, Xiaodong Liu, Tristan Naumann, Jianfeng Gao, Hoifung Poon:
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing. ACM Trans. Comput. Heal. 3(1): 2:1-2:23 (2022) - [c4]Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel C. Castro, Anton Schwaighofer, Stephanie L. Hyland, Maria Wetscherek, Tristan Naumann, Aditya V. Nori, Javier Alvarez-Valle, Hoifung Poon, Ozan Oktay:
Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing. ECCV (36) 2022: 1-21 - [i7]Sam Preston, Mu Wei, Rajesh Rao, Robert Tinn, Naoto Usuyama, Michael Lucas, Roshanthi Weerasinghe, Soohee Lee, Brian Piening, Paul Tittel, Naveen Valluri, Tristan Naumann, Carlo Bifulco, Hoifung Poon:
Towards Structuring Real-World Data at Scale: Deep Learning for Extracting Key Oncology Information from Clinical Text with Patient-Level Supervision. CoRR abs/2203.10442 (2022) - [i6]Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel C. Castro, Anton Schwaighofer, Stephanie L. Hyland, Maria Wetscherek, Tristan Naumann, Aditya V. Nori, Javier Alvarez-Valle, Hoifung Poon, Ozan Oktay:
Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing. CoRR abs/2204.09817 (2022) - 2021
- [c3]Sheng Zhang, Cliff Wong, Naoto Usuyama, Sarthak Jain, Tristan Naumann, Hoifung Poon:
Modular Self-Supervision for Document-Level Relation Extraction. EMNLP (1) 2021: 5291-5302 - [c2]Yu Wang, Jinchao Li, Tristan Naumann, Chenyan Xiong, Hao Cheng, Robert Tinn, Cliff Wong, Naoto Usuyama, Richard Rogahn, Zhihong Shen, Yang Qin, Eric Horvitz, Paul N. Bennett, Jianfeng Gao, Hoifung Poon:
Domain-Specific Pretraining for Vertical Search: Case Study on Biomedical Literature. KDD 2021: 3717-3725 - [i5]Yu Wang, Jinchao Li, Tristan Naumann, Chenyan Xiong, Hao Cheng, Robert Tinn, Cliff Wong, Naoto Usuyama, Richard Rogahn, Zhihong Shen, Yang Qin, Eric Horvitz, Paul N. Bennett, Jianfeng Gao, Hoifung Poon:
Domain-Specific Pretraining for Vertical Search: Case Study on Biomedical Literature. CoRR abs/2106.13375 (2021) - [i4]Sheng Zhang, Cliff Wong, Naoto Usuyama, Sarthak Jain, Tristan Naumann, Hoifung Poon:
Modular Self-Supervision for Document-Level Relation Extraction. CoRR abs/2109.05362 (2021) - [i3]Robert Tinn, Hao Cheng, Yu Gu, Naoto Usuyama, Xiaodong Liu, Tristan Naumann, Jianfeng Gao, Hoifung Poon:
Fine-Tuning Large Neural Language Models for Biomedical Natural Language Processing. CoRR abs/2112.07869 (2021) - 2020
- [c1]Naoto Usuyama, Natalia Larios Delgado, Amanda K. Hall, Jessica Lundin:
ePillID Dataset: A Low-Shot Fine-Grained Benchmark for Pill Identification. CVPR Workshops 2020: 3971-3977 - [i2]Naoto Usuyama, Natalia Larios Delgado, Amanda K. Hall, Jessica Lundin:
ePillID Dataset: A Low-Shot Fine-Grained Benchmark for Pill Identification. CoRR abs/2005.14288 (2020) - [i1]Yu Gu, Robert Tinn, Hao Cheng, Michael Lucas, Naoto Usuyama, Xiaodong Liu, Tristan Naumann, Jianfeng Gao, Hoifung Poon:
Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing. CoRR abs/2007.15779 (2020)
2010 – 2019
- 2019
- [j2]Natalia Larios Delgado, Naoto Usuyama, Amanda K. Hall, Rebecca J. Hazen, Max Ma, Siva Sahu, Jessica Lundin:
Fast and accurate medication identification. npj Digit. Medicine 2 (2019) - 2014
- [j1]Naoto Usuyama, Yuichi Shiraishi, Yusuke Sato, Haruki Kume, Yukio Homma, Seishi Ogawa, Satoru Miyano, Seiya Imoto:
HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations. Bioinform. 30(23): 3302-3309 (2014)
Coauthor Index
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