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2010 – 2019
- 2017
[j14]Maximilian Hastreiter
, Tim Jeske, Jonathan Hoser, Michael Kluge, Kaarin Ahomaa, Marie-Sophie Friedl, Sebastian J. Kopetzky, Jan-Dominik Quell, Hans-Werner Mewes, Robert Küffner:
KNIME4NGS: a comprehensive toolbox for next generation sequencing analysis. Bioinform. 33(10): 1565-1567 (2017)- 2015
- [j13]Tobias Petri, Stefan Altmann, Ludwig Geistlinger, Ralf Zimmer, Robert Küffner:
Addressing false discoveries in network inference. Bioinform. 31(17): 2836-2843 (2015) - [i1]Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez:
DREAMTools: a Python package for scoring collaborative challenges. F1000Research 4: 1030 (2015) - 2013
- [j12]Robert Maier, Ralf Zimmer, Robert Küffner:
A Turing test for artificial expression data. Bioinform. 29(20): 2603-2609 (2013) - 2012
- [j11]Robert Küffner, Tobias Petri, Pegah Tavakkolkhah, Lukas Windhager, Ralf Zimmer:
Inferring gene regulatory networks by ANOVA. Bioinform. 28(10): 1376-1382 (2012) - [j10]Haroon Naeem, Ralf Zimmer, Pegah Tavakkolkhah, Robert Küffner:
Rigorous assessment of gene set enrichment tests. Bioinform. 28(11): 1480-1486 (2012) - 2011
- [j9]Ludwig Geistlinger, Gergely Csaba, Robert Küffner, Nicola J. Mulder, Ralf Zimmer:
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems. Bioinform. 27(13): 366-373 (2011) - [j8]Tobias Petri, Robert Küffner, Ralf Zimmer:
Experiment Specific Expression Patterns. J. Comput. Biol. 18(11): 1423-1435 (2011) - [c6]Tobias Petri, Robert Küffner, Ralf Zimmer:
Experiment Specific Expression Patterns. RECOMB 2011: 339-354 - 2010
- [j7]Haroon Naeem, Robert Küffner, Gergely Csaba, Ralf Zimmer:
miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature. BMC Bioinform. 11: 135 (2010)
2000 – 2009
- 2009
- [j6]Fabian Birzele, Gergely Csaba, Florian Erhard, Caroline C. Friedel, Robert Küffner, Tobias Petri, Lukas Windhager, Ralf Zimmer:
Algorithmische Systembiologie mit Petrinetzen - Von qualitativen zu quantitativen Systemmodellen. Inform. Spektrum 32(4): 310-319 (2009) - 2008
- [j5]Fabian Birzele, Robert Küffner, Franziska Meier, Florian Oefinger, Christian Potthast, Ralf Zimmer:
ProSAS: a database for analyzing alternative splicing in the context of protein structures. Nucleic Acids Res. 36(Database-Issue): 63-68 (2008) - 2007
- [j4]Katrin Fundel, Robert Küffner, Ralf Zimmer:
RelEx - Relation extraction using dependency parse trees. Bioinform. 23(3): 365-371 (2007) - 2006
- [j3]Chad A. Davis, Fabian Gerick, Volker Hintermair, Caroline C. Friedel, Katrin Fundel, Robert Küffner, Ralf Zimmer:
Reliable gene signatures for microarray classification: assessment of stability and performance. Bioinform. 22(19): 2356-2363 (2006) - [c5]Robert Küffner, Timo Duchrow, Katrin Fundel, Ralf Zimmer:
Characterization of Protein Interactions. German Conference on Bioinformatics 2006: 64-73 - 2005
- [c4]Robert Küffner, Katrin Fundel, Ralf Zimmer:
Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts. ECCB/JBI 2005: 267 - [c3]Katrin Fundel, Robert Küffner, Thomas Aigner, Ralf Zimmer:
Data Processing Effects on the Interpretation of Microarray Gene Expression Experiments. German Conference on Bioinformatics 2005: 77-91 - 2001
- [j2]Hartmann J. Genrich, Robert Küffner, Klaus Voss:
Executable Petri net models for the analysis of metabolic pathways. Int. J. Softw. Tools Technol. Transf. 3(4): 394-404 (2001) - 2000
- [j1]Robert Küffner, Ralf Zimmer, Thomas Lengauer:
Pathway analysis in metabolic databases via differential metabolic display (DMD). Bioinform. 16(9): 825-836 (2000) - [c2]Alexander Zien, Robert Küffner, Ralf Zimmer, Thomas Lengauer:
Analysis of Gene Expression Data with Pathway Scores. ISMB 2000: 407-417
1990 – 1999
- 1999
- [c1]Robert Küffner, Ralf Zimmer, Thomas Lengauer:
Pathway analysis in metabolic databases via differetial metabolic display (DMD). German Conference on Bioinformatics 1999: 141-147
Coauthor Index
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