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Martin Steinegger
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2020 – today
- 2023
- [j16]Hyunbin Kim, Milot Mirdita, Martin Steinegger:
Foldcomp: a library and format for compressing and indexing large protein structure sets. Bioinform. 39(4) (2023) - [j15]Daniel Liu, Martin Steinegger:
Block Aligner: an adaptive SIMD-accelerated aligner for sequences and position-specific scoring matrices. Bioinform. 39(8) (2023) - [j14]Dongwook Kim, Cameron L. M. Gilchrist, Jongsik Chun, Martin Steinegger:
UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi. Nucleic Acids Res. 51(D1): 777-784 (2023) - 2022
- [j13]Christopher Pockrandt, Martin Steinegger, Steven L. Salzberg:
PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools. Bioinform. 38(5): 1440-1442 (2022) - [j12]Konstantin Schütze, Michael Heinzinger, Martin Steinegger, Burkhard Rost:
Nearest neighbor search on embeddings rapidly identifies distant protein relations. Frontiers Bioinform. 2 (2022) - [j11]Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi, Yu Wang, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Martin Steinegger, Debsindhu Bhowmik, Burkhard Rost:
ProtTrans: Toward Understanding the Language of Life Through Self-Supervised Learning. IEEE Trans. Pattern Anal. Mach. Intell. 44(10): 7112-7127 (2022) - 2021
- [j10]Milot Mirdita, Martin Steinegger, Florian P. Breitwieser, Johannes Söding, Eli Levy Karin:
Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinform. 37(18): 3029-3031 (2021) - [j9]Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradovic, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz A. Kurgan:
DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Res. 49(Database-Issue): D298-D308 (2021) - [j8]Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost:
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49(Webserver-Issue): 535-540 (2021) - 2020
- [i1]Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi, Yu Wang, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Martin Steinegger, Debsindhu Bhowmik, Burkhard Rost:
ProtTrans: Towards Cracking the Language of Life's Code Through Self-Supervised Deep Learning and High Performance Computing. CoRR abs/2007.06225 (2020)
2010 – 2019
- 2019
- [j7]Milot Mirdita, Martin Steinegger, Johannes Söding:
MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinform. 35(16): 2856-2858 (2019) - [j6]Martin Steinegger, Markus Meier, Milot Mirdita, Harald Vöhringer, Stephan J. Haunsberger, Johannes Söding:
HH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinform. 20(1): 473:1-473:15 (2019) - 2018
- [j5]Yannick Mahlich, Martin Steinegger, Burkhard Rost, Yana Bromberg:
HFSP: high speed homology-driven function annotation of proteins. Bioinform. 34(13): i304-i312 (2018) - 2017
- [j4]Milot Mirdita, Lars von den Driesch, Clovis Galiez, Maria Jesus Martin, Johannes Söding, Martin Steinegger:
Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Res. 45(Database-Issue): D170-D176 (2017) - [c1]Janik Deutscher, Klaus Granica, Martin Steinegger, Manuela Hirschmugl, Roland Perko, Mathias Schardt:
Updating lidar-derived crown cover density products with sentinel-2. IGARSS 2017: 2867-2874 - 2016
- [j3]Maria Hauser, Martin Steinegger, Johannes Söding:
MMseqs software suite for fast and deep clustering and searching of large protein sequence sets. Bioinform. 32(9): 1323-1330 (2016) - 2015
- [j2]Heinz Gallaun, Martin Steinegger, Roland Wack, Mathias Schardt, Birgit Kornberger, Ursula Schmitt:
Remote Sensing Based Two-Stage Sampling for Accuracy Assessment and Area Estimation of Land Cover Changes. Remote. Sens. 7(9): 11992-12008 (2015) - 2014
- [j1]Manuela Hirschmugl, Martin Steinegger, Heinz Gallaun, Mathias Schardt:
Mapping Forest Degradation due to Selective Logging by Means of Time Series Analysis: Case Studies in Central Africa. Remote. Sens. 6(1): 756-775 (2014)
Coauthor Index
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