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ORCIDSimone Ciccolella
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2020 – today
- 2023
[j9]Simone Ciccolella
, Gianluca Della Vedova, Vladimir Filipovic, Mauricio Soto Gomez:
Three Metaheuristic Approaches for Tumor Phylogeny Inference: An Experimental Comparison. Algorithms 16(7): 333 (2023)- [j8]Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson:
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data. J. Comput. Biol. 30(4): 469-491 (2023) - 2022
- [i1]Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson:
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data. CoRR abs/2211.08267 (2022) - 2021
- [j7]Simone Ciccolella, Giulia Bernardini, Luca Denti, Paola Bonizzoni, Marco Previtali, Gianluca Della Vedova:
Triplet-based similarity score for fully multilabeled trees with poly-occurring labels. Bioinform. 37(2): 178-184 (2021) - [j6]Simone Ciccolella, Camir Ricketts, Mauricio Soto Gomez, Murray Patterson, Dana Silverbush, Paola Bonizzoni, Iman Hajirasouliha, Gianluca Della Vedova:
Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses. Bioinform. 37(3): 326-333 (2021) - [j5]Simone Ciccolella, Luca Denti, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali:
MALVIRUS: an integrated application for viral variant analysis. BMC Bioinform. 22-S(15): 625 (2021) - [j4]Sarwan Ali, Simone Ciccolella, Lorenzo Lucarella, Gianluca Della Vedova, Murray Patterson:
Simpler and Faster Development of Tumor Phylogeny Pipelines. J. Comput. Biol. 28(11): 1142-1155 (2021) - [j3]Simone Ciccolella, Murray Patterson, Paola Bonizzoni, Gianluca Della Vedova:
Effective Clustering for Single Cell Sequencing Cancer Data. IEEE J. Biomed. Health Informatics 25(11): 4068-4078 (2021) - [c4]Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson:
Clustering SARS-CoV-2 Variants from Raw High-Throughput Sequencing Reads Data. ICCABS 2021: 133-148 - 2020
- [j2]Simone Ciccolella, Mauricio Soto Gomez, Murray D. Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni:
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. BMC Bioinform. 21-S(1): 413 (2020)
2010 – 2019
- 2019
- [j1]Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Mauricio Soto Gomez:
Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 16(5): 1410-1423 (2019) - [c3]Simone Ciccolella, Murray D. Patterson, Paola Bonizzoni, Gianluca Della Vedova:
Effective Clustering for Single Cell Sequencing Cancer Data. BCB 2019: 437-446 - 2018
- [c2]Simone Ciccolella, Mauricio Soto Gomez, Murray Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni:
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. ICCABS 2018: 1 - 2017
- [c1]Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Mauricio Soto Gomez:
Beyond Perfect Phylogeny: Multisample Phylogeny Reconstruction via ILP. BCB 2017: 1-10
Coauthor Index
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