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2020 – today
- 2023
[j28]Vandana Sreedharan, Upinder S. Bhalla, Naren Ramakrishnan:
Using sensitivity analyses to understand bistable system behavior. BMC Bioinform. 24(1): 136 (2023)- 2021
- [j27]Gubbi Vani HarshaRani, S. Moza
, Naren Ramakrishnan, Upinder S. Bhalla:
SWITCHES: Searchable Web Interface for Topologies of CHEmical Switches. Bioinform. 37(16): 2504-2505 (2021) - [j26]Upinder S. Bhalla:
HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks. PLoS Comput. Biol. 17(11) (2021)
2010 – 2019
- 2019
- [j25]Husayn Ahmed P., Vidhya V., Ravi Prabhakar More, Biju Viswanath, Sanjeev Jain, Mahendra S. Rao, Odity Mukherjee, Naren P. Rao, Janardhanan C. Narayanaswamy, Palanimuthu T. Sivakumar, Arun Kandaswamy, Muralidharan Kesavan, Urvakhsh-Meherwan Mehta, Ganesan Venkatasubramanian, John P. John, Meera Purushottam, Ramakrishnan Kannan, Bhupesh Mehta, Thennarasu Kandavel, B. Binukumar, Jitender Saini, Deepak Jayarajan, A. Shyamsundar, Sydney Moirangthem, Kumar G. Vijay, Jagadisha Thirthalli, Prabha S. Chandra, Bangalore N. Gangadhar, Pratima Murthy, Mitradas M. Panicker, Upinder S. Bhalla, Sumantra Chattarji, Vivek Benegal, Mathew Varghese, Janardhan Y. C. Reddy, Padinjat Raghu:
INDEX-db: The Indian Exome Reference Database (Phase I). J. Comput. Biol. 26(3): 225-234 (2019) - 2018
- [j24]Nisha A. Viswan, Gubbi Vani HarshaRani, Melanie I. Stefan, Upinder S. Bhalla:
FindSim: A Framework for Integrating Neuronal Data and Signaling Models. Frontiers Neuroinformatics 12: 38 (2018) - 2017
- [j23]Ekaterina Brocke, Mikael Djurfeldt, Upinder S. Bhalla, Jeanette Hellgren Kotaleski, Michael Hanke:
Multirate method for co-simulation of electrical-chemical systems in multiscale modeling. J. Comput. Neurosci. 42(3): 245-256 (2017) - 2016
- [j22]Ekaterina Brocke, Upinder S. Bhalla, Mikael Djurfeldt, Jeanette Hellgren Kotaleski, Michael Hanke:
Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations. Frontiers Comput. Neurosci. 10: 97 (2016) - [j21]Subhasis Ray, Chaitanya Chintaluri, Upinder S. Bhalla, Daniel K. Wójcik:
NSDF: Neuroscience Simulation Data Format. Neuroinformatics 14(2): 147-167 (2016) - [j20]Anu G. Nair, Upinder S. Bhalla, Jeanette Hellgren Kotaleski:
Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration. PLoS Comput. Biol. 12(9) (2016) - 2015
- [j19]Jens-Oliver Muthmann, Hayder Amin, Evelyne Sernagor, Alessandro Maccione, Dagmara Panas, Luca Berdondini, Upinder S. Bhalla, Matthias H. Hennig:
Spike Detection for Large Neural Populations Using High Density Multielectrode Arrays. Frontiers Neuroinformatics 9: 28 (2015) - 2014
- [r1]Niraj Dudani, Upinder S. Bhalla, Subhasis Ray:
MOOSE, the Multiscale Object-Oriented Simulation Environment. Encyclopedia of Computational Neuroscience 2014 - 2012
- [j18]Dhanya Parameshwaran, Upinder S. Bhalla:
Summation in the Hippocampal CA3-CA1 Network Remains Robustly Linear Following Inhibitory Modulation and Plasticity, but Undergoes Scaling and Offset Transformations. Frontiers Comput. Neurosci. 6: 71 (2012) - 2011
- [j17]Upinder S. Bhalla:
Multiscale interactions between chemical and electric signaling in LTP induction, LTP reversal and dendritic excitability. Neural Networks 24(9): 943-949 (2011) - [j16]Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère:
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput. Biol. 7(4) (2011) - 2010
- [j15]Mikael Djurfeldt, Johannes Hjorth, Jochen M. Eppler, Niraj Dudani, Moritz Helias, Tobias C. Potjans, Upinder S. Bhalla, Markus Diesmann, Jeanette Hellgren Kotaleski, Örjan Ekeberg:
Run-Time Interoperability Between Neuronal Network Simulators Based on the MUSIC Framework. Neuroinformatics 8(1): 43-60 (2010) - [j14]Padraig Gleeson, Sharon M. Crook, Robert C. Cannon, Michael L. Hines, Guy O. Billings, Matteo Farinella, Thomas M. Morse, Andrew P. Davison, Subhasis Ray, Upinder S. Bhalla, Simon R. Barnes, Yoana D. Dimitrova, Angus Silver:
NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail. PLoS Comput. Biol. 6(6) (2010)
2000 – 2009
- 2009
- [j13]Naren Ramakrishnan, Upinder S. Bhalla, John J. Tyson:
Computing with Proteins. Computer 42(1): 47-56 (2009) - [j12]Pragati Jain, Upinder S. Bhalla:
Signaling Logic of Activity-Triggered Dendritic Protein Synthesis: An mTOR Gate But Not a Feedback Switch. PLoS Comput. Biol. 5(2) (2009) - 2008
- [j11]Subhasis Ray, Upinder S. Bhalla:
PyMOOSE: interoperable scripting in Python for MOOSE. Frontiers Neuroinformatics 2: 6 (2008) - [j10]Upinder S. Bhalla:
How To Record a Million Synaptic Weights in a Hippocampal Slice. PLoS Comput. Biol. 4(6) (2008) - [j9]Naren Ramakrishnan, Upinder S. Bhalla:
Memory Switches in Chemical Reaction Space. PLoS Comput. Biol. 4(7) (2008) - 2007
- [j8]Robert C. Cannon, Marc-Oliver Gewaltig, Padraig Gleeson, Upinder S. Bhalla, Hugo Cornelis, Michael L. Hines, Fredrick W. Howell, Eilif Mueller, Joel R. Stiles, Stefan Wils, Erik De Schutter:
Interoperability of Neuroscience Modeling Software: Current Status and Future Directions. Neuroinformatics 5(2): 127-138 (2007) - 2005
- [j7]Arnold Hayer, Upinder S. Bhalla:
Molecular Switches at the Synapse Emerge from Receptor and Kinase Traffic. PLoS Comput. Biol. 1(2) (2005) - 2004
- [j6]Karan Vasudeva, Upinder S. Bhalla:
Adaptive stochastic-deterministic chemical kinetic simulations. Bioinform. 20(1): 78-84 (2004) - 2003
- [j5]Sudhir Sivakumaran, Sridhar Hariharaputran, Jyoti Mishra, Upinder S. Bhalla:
The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks. Bioinform. 19(3): 408-415 (2003) - [j4]Upinder S. Bhalla:
Managing models of signaling networks. Neurocomputing 52-54: 215-220 (2003) - 2002
- [j3]Upinder S. Bhalla:
The chemical organization of signaling interactions. Bioinform. 18(6): 855-863 (2002) - [j2]Upinder S. Bhalla:
Biochemical Signaling Networks Decode Temporal Patterns of Synaptic Input. J. Comput. Neurosci. 13(1): 49-62 (2002)
1990 – 1999
- 1997
- [j1]Upinder S. Bhalla, James M. Bower:
Multiday Recordings from Olfactory Bulb Neurons in Awake Freely Moving Rats: Spatially and Temporally Organized Variability in Odorant Response Propertie. J. Comput. Neurosci. 4(3): 221-256 (1997)
1980 – 1989
- 1988
- [c1]Matthew A. Wilson, Upinder S. Bhalla, John D. Uhley, James M. Bower:
GENESIS: A System for Simulating Neural Networks. NIPS 1988: 485-492
Coauthor Index
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