default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDJacques van Helden
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2022
[j26]Walter Santana-Garcia
, Jaime Abraham Castro-Mondragón, Mónica Padilla-Gálvez, Nga Thi Thuy Nguyen, Ana Elizondo-Salas, Najla Ksouri, François Gerbes, Denis Thieffry, Pierre Vincens, Bruno Contreras-Moreira, Jacques van Helden, Morgane Thomas-Chollier, Alejandra Medina-Rivera:
RSAT 2022: regulatory sequence analysis tools. Nucleic Acids Res. 50(W1): 670-676 (2022)
2010 – 2019
- 2018
- [j25]Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer:
Sequanix: a dynamic graphical interface for Snakemake workflows. Bioinform. 34(11): 1934-1936 (2018) - [j24]Nga Thi Thuy Nguyen, Bruno Contreras-Moreira, Jaime Abraham Castro-Mondragón, Walter Santana-Garcia, Raul Ossio, Carla Daniela Robles-Espinoza, Mathieu Bahin, Samuel Collombet, Pierre Vincens, Denis Thieffry, Jacques van Helden, Alejandra Medina-Rivera, Morgane Thomas-Chollier:
RSAT 2018: regulatory sequence analysis tools 20th anniversary. Nucleic Acids Res. 46(Webserver-Issue): W209-W214 (2018) - 2015
- [j23]Alejandra Medina-Rivera, Matthieu Defrance, Olivier Sand, Carl Herrmann, Jaime Abraham Castro-Mondragón, Jeremy Delerce, Sébastien Jaeger, Christophe Blanchet, Pierre Vincens, Christophe Caron, Daniel M. Staines, Bruno Contreras-Moreira, Marie Artufel, Lucie Charbonnier-Khamvongsa, Céline Hernandez, Denis Thieffry, Morgane Thomas-Chollier, Jacques van Helden:
RSAT 2015: Regulatory Sequence Analysis Tools. Nucleic Acids Res. 43(Webserver-Issue): W50-W56 (2015) - 2012
- [c5]Frédérique Lisacek, Patrick Koks, Pascale Berthault, Grégoire Rossier, Guy Bottu, Jacques van Helden, Jean Sylvestre, Jean-Pierre Kraehenbuhl, Jack A. M. Leunissen:
eBiomics - A Website Promoting Good Practices and Specific Methods for using Bioinformatics Resources. BIOINFORMATICS 2012: 386-391 - 2011
- [j22]Karoline Faust, Didier Croes, Jacques van Helden:
Prediction of metabolic pathways from genome-scale metabolic networks. Biosyst. 105(2): 109-121 (2011) - [j21]Morgane Thomas-Chollier, Matthieu Defrance, Alejandra Medina-Rivera, Olivier Sand, Carl Herrmann, Denis Thieffry, Jacques van Helden:
RSAT 2011: regulatory sequence analysis tools. Nucleic Acids Res. 39(Web-Server-Issue): 86-91 (2011) - 2010
- [j20]Karoline Faust, Pierre Dupont, Jérôme Callut, Jacques van Helden:
Pathway discovery in metabolic networks by subgraph extraction. Bioinform. 26(9): 1211-1218 (2010)
2000 – 2009
- 2009
- [j19]Matthieu Defrance, Jacques van Helden:
info-gibbs: a motif discovery algorithm that directly optimizes information content during sampling. Bioinform. 25(20): 2715-2722 (2009) - [j18]Olivier Sand, Morgane Thomas-Chollier, Jacques van Helden:
Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl. Bioinform. 25(20): 2739-2740 (2009) - [j17]Karoline Faust, Didier Croes, Jacques van Helden:
In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. Bioinform. 25(23): 3202-3205 (2009) - [c4]Kevin Kontos, Bruno André, Jacques van Helden, Gianluca Bontempi:
Gaussian Graphical Models to Infer Putative Genes Involved in Nitrogen Catabolite Repression in S. cerevisiae. EvoBIO 2009: 13-24 - 2008
- [j16]Gipsi Lima-Mendez, Jacques van Helden, Ariane Toussaint, Raphaël Leplae:
Prophinder: a computational tool for prophage prediction in prokaryotic genomes. Bioinform. 24(6): 863-865 (2008) - [j15]Rekin's Janky, Jacques van Helden:
Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution. BMC Bioinform. 9 (2008) - [j14]Morgane Thomas-Chollier, Olivier Sand, Jean-Valéry Turatsinze, Rekin's Janky, Matthieu Defrance, Eric Vervisch, Sylvain Brohée, Jacques van Helden:
RSAT: regulatory sequence analysis tools. Nucleic Acids Res. 36(Web-Server-Issue): 119-127 (2008) - [j13]Sylvain Brohée, Karoline Faust, Gipsi Lima-Mendez, Olivier Sand, Rekin's Janky, Gilles Vanderstocken, Yves Deville, Jacques van Helden:
NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways. Nucleic Acids Res. 36(Web-Server-Issue): 444-451 (2008) - 2007
- [j12]Najib Naamane, Jacques van Helden, Decio L. Eizirik:
In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells. BMC Bioinform. 8 (2007) - 2006
- [j11]Sylvain Brohée, Jacques van Helden:
Evaluation of clustering algorithms for protein-protein interaction networks. BMC Bioinform. 7: 488 (2006) - 2005
- [j10]Didier Gonze, Sylvie Pinloche, Olivier Gascuel, Jacques van Helden:
Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs. Bioinform. 21(17): 3490-3500 (2005) - [j9]Ulrich Güldener, Martin Münsterkötter, Gabi Kastenmüller, Normann Strack, Jacques van Helden, Christian Lemer, J. Richelles, Shoshana J. Wodak, J. García-Martínez, José E. Pérez-Ortín, Holger Michael, Andreas Kaps, E. Talla, Bernard Dujon, Bruno André, J. L. Souciet, J. De Montigny, E. Bon, C. Gaillardin, Hans-Werner Mewes:
CYGD: the Comprehensive Yeast Genome Database. Nucleic Acids Res. 33(Database-Issue): 364-368 (2005) - [j8]Didier Croes, Fabian Couche, Shoshana J. Wodak, Jacques van Helden:
Metabolic PathFinding: inferring relevant pathways in biochemical networks. Nucleic Acids Res. 33(Web-Server-Issue): 326-330 (2005) - 2004
- [j7]Jacques van Helden:
Metrics for comparing regulatory sequences on the basis of pattern counts. Bioinform. 20(3): 399-406 (2004) - [j6]N. Simonis, Shoshana J. Wodak, G. N. Cohen, Jacques van Helden:
Combining pattern discovery and discriminant analysis to predict gene co-regulation. Bioinform. 20(15): 2370-2379 (2004) - 2003
- [j5]Yves Deville, David R. Gilbert, Jacques van Helden, Shoshana J. Wodak:
An overview of data models for the analysis of biochemical pathways. Briefings Bioinform. 4(3): 246-259 (2003) - [j4]Jacques van Helden:
Regulatory Sequence Analysis Tools. Nucleic Acids Res. 31(13): 3593-3596 (2003) - [c3]Yves Deville, David R. Gilbert, Jacques van Helden, Shoshana J. Wodak:
An Overview of Data Models for the Analysis of Biochemical Pathways. CMSB 2003: 174 - 2001
- [j3]Jacques van Helden, Avi Naim, Christian Lemer, Renato Mancuso, Matthew D. Eldridge, Shoshana J. Wodak:
From Molecular Activities and Processes to Biological Function. Briefings Bioinform. 2(1): 81-107 (2001) - [j2]Michael Schroeder, David R. Gilbert, Jacques van Helden, Penny Noy:
Approaches to visualisation in bioinformatics: from dendrograms to Space Explorer. Inf. Sci. 139(1-2): 19-57 (2001) - 2000
- [c2]Jacques van Helden, David R. Gilbert, Lorenz Wernisch, Michael Schroeder, Shoshana J. Wodak:
Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data. JOBIM 2000: 147-164
1990 – 1999
- 1999
- [j1]Heladia Salgado, Alberto Santos-Zavaleta, Ulises Garza-Ramos, Jacques van Helden, Edgar Díaz-Peredo, Julio Collado-Vides:
RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli. Nucleic Acids Res. 27(1): 59-60 (1999) - [c1]Jacques van Helden, David R. Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew D. Eldridge, Kirill Degtyarenko, Shoshana J. Wodak:
Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database. German Conference on Bioinformatics 1999: 227-229
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 21:19 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
