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ORCIDBruce J. Aronow
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2020 – today
- 2024
[j23]Riku Nakagaki, Shyam Sundar Debsarkar, Hiroharu Kawanaka
, Bruce J. Aronow, V. B. Surya Prasath:
Deep learning-based IDH1 gene mutation prediction using histopathological imaging and clinical data. Comput. Biol. Medicine 179: 108902 (2024)- 2023
- [j22]Amelia L. M. Tan, Emily J. Getzen, Meghan R. Hutch, Zachary H. Strasser, Alba Gutiérrez-Sacristán, Trang T. Le, Arianna Dagliati, Michele Morris, David A. Hanauer, Bertrand Moal, Clara-Lea Bonzel, William Yuan, Lorenzo Chiudinelli, Priyam Das, Harrison G. Zhang, Bruce J. Aronow, Paul Avillach, Gabriel A. Brat, Tianxi Cai, Chuan Hong, William G. La Cava, He Hooi Will Loh, Yuan Luo, Shawn N. Murphy, Kee Yuan Hgiam, Gilbert S. Omenn, Lav P. Patel, Malarkodi J. Samayamuthu, Emily R. Shriver, Zahra Shakeri Hossein Abad, Byorn W. L. Tan, Shyam Visweswaran, Xuan Wang, Griffin M. Weber, Zongqi Xia, Bertrand Verdy, Qi Long, Danielle L. Mowery, John H. Holmes:
Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record? J. Biomed. Informatics 139: 104306 (2023) - 2022
- [j21]Kang Jin, Daniel J. Schnell, Guangyuan Li, Nathan Salomonis, V. B. Surya Prasath, Rhonda Szczesniak, Bruce J. Aronow:
CellDrift: inferring perturbation responses in temporally sampled single-cell data. Briefings Bioinform. 23(5) (2022) - [j20]Daiki Katsuma, Hiroharu Kawanaka, V. B. Surya Prasath, Bruce J. Aronow:
Data Augmentation Using Generative Adversarial Networks for Multi-Class Segmentation of Lung Confocal IF Images. J. Adv. Comput. Intell. Intell. Informatics 26(2): 138-146 (2022) - [j19]Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L'Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne-Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber:
International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. npj Digit. Medicine 5 (2022) - 2021
- [j18]Anna Maria Masci, Scott White, Ben Neely, Maryanne Ardini-Polaske, Carol B. Hill, Ravi S. Misra, Bruce J. Aronow, Nathan Gaddis, Lina Yang, Susan E. Wert, Scott M. Palmer, Cliburn Chan:
Ontology-guided segmentation and object identification for developmental mouse lung immunofluorescent images. BMC Bioinform. 22(1): 82 (2021)
2010 – 2019
- 2019
- [c11]Shu Isaka, Hiroharu Kawanaka, Bruce J. Aronow, V. B. Surya Prasath:
Multi-Class Segmentation of Lung Immunofluorescence Confocal Images Using Deep Learning. BIBM 2019: 2362-2368 - 2018
- [c10]Dana C. Crawford, Alexander A. Morgan, Joshua C. Denny, Bruce J. Aronow, Steven E. Brenner:
Session Introduction. PSB 2018: 389-399 - 2017
- [c9]Asami Yonekura, Hiroharu Kawanaka, V. B. Surya Prasath, Bruce J. Aronow, Haruhiko Takase:
Improving the generalization of disease stage classification with deep CNN for Glioma histopathological images. BIBM 2017: 1222-1226 - [c8]Alexander A. Morgan, Dana C. Crawford, Joshua C. Denny, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner:
Session Introduction. PSB 2017: 348-355 - 2016
- [j17]Andre Olsson, Meenakshi Venkatasubramanian, Viren K. Chaudhri, Bruce J. Aronow, Nathan Salomonis, Harinder Singh, H. Leighton Grimes:
Single-cell analysis of mixed-lineage states leading to a binary cell fate choice. Nat. 537(7622): 698-702 (2016) - [c7]Kiichi Fukuma, V. B. Surya Prasath, Hiroharu Kawanaka, Bruce J. Aronow, Haruhiko Takase:
A study on feature extraction and disease stage classification for Glioma pathology images. FUZZ-IEEE 2016: 2150-2156 - [c6]Kiichi Fukuma, V. B. Surya Prasath, Hiroharu Kawanaka, Bruce J. Aronow, Haruhiko Takase:
A Study on Nuclei Segmentation, Feature Extraction and Disease Stage Classification for Human Brain Histopathological Images. KES 2016: 1202-1210 - [c5]Alexander A. Morgan, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner:
Session Introduction. PSB 2016: 243-248 - 2015
- [c4]V. B. Surya Prasath, Kiichi Fukuma, Bruce J. Aronow, Hiroharu Kawanaka:
Cell nuclei segmentation in glioma histopathology images with color decomposition based active contours. BIBM 2015: 1734-1736 - [c3]Kiichi Fukuma, Hiroharu Kawanaka, V. B. Surya Prasath, Bruce J. Aronow, Haruhiko Takase:
Feature extraction and disease stage classification for Glioma histopathology images. HealthCom 2015: 598-599 - 2014
- [j16]Jim Cavalcoli, Lonnie R. Welch, Bruce J. Aronow, Sorin Draghici, Daisuke Kihara:
The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16-18, 2014, Cincinnati, Ohio. Bioinform. 30(1): 148-149 (2014) - [j15]Chao Wu, Eric E. Bardes, Anil G. Jegga, Bruce J. Aronow:
ToppMiR: ranking microRNAs and their mRNA targets based on biological functions and context. Nucleic Acids Res. 42(Webserver-Issue): 107-113 (2014) - [c2]Kazuhiko Tamaki, Kiichi Fukuma, Hiroharu Kawanaka, Haruhiko Takase, Shinji Tsuruoka, Bruce J. Aronow, Shikha Chaganti:
Comparative study on feature descriptors for brain image analysis. SCIS&ISIS 2014: 679-682 - 2013
- [j14]Chao Wu, Ranga Chandra Gudivada, Bruce J. Aronow, Anil G. Jegga:
Computational drug repositioning through heterogeneous network clustering. BMC Syst. Biol. 7(S-5): S6 (2013) - [c1]Chao Wu, Arjun Bakshi, Bruce J. Aronow, Anil G. Jegga, Raj Bhatnagar:
A Biclustering Algorithm to Discover Functional Modules from ENCODE ChIP-Seq Data. ICDM Workshops 2013: 96-103 - 2010
- [j13]Ramy K. Aziz, Bruce J. Aronow, William L. Taylor, Sarah Rowe, Rita Kansal, Mark J. Walker, Malak Kotb:
Integrating neighbor clustering, coexpression clustering and subsystems analysis to define dynamic changes in regulatory networks associated with group A streptococcal sociomicrobiology and niche adaptation. BMC Bioinform. 11(S-4): P12 (2010) - [j12]Vivek Kaimal, Eric E. Bardes, Scott C. Tabar, Anil G. Jegga, Bruce J. Aronow:
ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems. Nucleic Acids Res. 38(Web-Server-Issue): 96-102 (2010) - [j11]Divya Sardana, Suresh Vasa, Nishanth Vepachedu, Jing Chen, Ranga Chandra Gudivada, Bruce J. Aronow, Anil G. Jegga:
PhenoHM: human-mouse comparative phenome-genome server. Nucleic Acids Res. 38(Web-Server-Issue): 165-174 (2010)
2000 – 2009
- 2009
- [j10]Jing Chen, Bruce J. Aronow, Anil G. Jegga:
Disease candidate gene identification and prioritization using protein interaction networks. BMC Bioinform. 10 (2009) - [j9]Jing Chen, Bruce J. Aronow, Anil G. Jegga:
Correction: Disease candidate gene identification and prioritization using protein interaction networks. BMC Bioinform. 10: 406 (2009) - [j8]Xiaoyan A. Qu, Ranga Chandra Gudivada, Anil G. Jegga, Eric K. Neumann, Bruce J. Aronow:
Inferring novel disease indications for known drugs by semantically linking drug action and disease mechanism relationships. BMC Bioinform. 10(S-5) (2009) - [j7]Jing Chen, Eric E. Bardes, Bruce J. Aronow, Anil G. Jegga:
ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res. 37(Web-Server-Issue): 305-311 (2009) - 2008
- [j6]Ranga Chandra Gudivada, Xiaoyan A. Qu, Jing Chen, Anil G. Jegga, Eric K. Neumann, Bruce J. Aronow:
Identifying disease-causal genes using Semantic Web-based representation of integrated genomic and phenomic knowledge. J. Biomed. Informatics 41(5): 717-729 (2008) - 2007
- [j5]Jing Chen, Huan Xu, Bruce J. Aronow, Anil G. Jegga:
Improved human disease candidate gene prioritization using mouse phenotype. BMC Bioinform. 8 (2007) - [j4]Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan, Bruce J. Aronow, Mario Medvedovic:
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data. BMC Bioinform. 8 (2007) - [j3]Anil G. Jegga, Jing Chen, Sivakumar Gowrisankar, Mrunal A. Deshmukh, Ranga Chandra Gudivada, Sue Kong, Vivek Kaimal, Bruce J. Aronow:
GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs. Nucleic Acids Res. 35(Database-Issue): 116-121 (2007) - [j2]Anil G. Jegga, Sivakumar Gowrisankar, Jing Chen, Bruce J. Aronow:
PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease. Nucleic Acids Res. 35(Database-Issue): 700-706 (2007) - 2005
- [j1]Anil G. Jegga, Ashima Gupta, Sivakumar Gowrisankar, Mrunal A. Deshmukh, Steven Connolly, Kevin Finley, Bruce J. Aronow:
CisMols Analyzer: identification of compositionally similar cis-element clusters in ortholog conserved regions of coordinately expressed genes. Nucleic Acids Res. 33(Web-Server-Issue): 408-411 (2005)
Coauthor Index
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