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2020 – today
- 2020
[j19]Yi Liu
, Kenneth Barr, John Reinitz:
Fully interpretable deep learning model of transcriptional control. Bioinform. 36(Supplement-1): i499-i507 (2020)
2010 – 2019
- 2019
- [j18]Kenneth Barr, John Reinitz, Ovidiu Radulescu:
An in silico analysis of robust but fragile gene regulation links enhancer length to robustness. PLoS Comput. Biol. 15(11) (2019) - 2016
- [j17]Zhihao Lou, John Reinitz:
Parallel simulated annealing using an adaptive resampling interval. Parallel Comput. 53: 23-31 (2016) - [c11]Jasha Sommer-Simpson, John Reinitz, Leonid Fridlyand, Louis Philipson, Ovidiu Radulescu:
Hybrid Reductions of Computational Models of Ion Channels Coupled to Cellular Biochemistry. CMSB 2016: 273-288 - 2014
- [j16]Dima Grigoriev, John Reinitz, Sergei Vakulenko, Andreas Weber:
Punctuated evolution and robustness in morphogenesis. Biosyst. 123: 106-113 (2014) - 2012
- [j15]Konstantin Kozlov, Svetlana Surkova, Ekaterina M. Myasnikova, John Reinitz, Maria Samsonova:
Modeling of Gap Gene Expression in Drosophila Kruppel Mutants. PLoS Comput. Biol. 8(8) (2012) - 2011
- [j14]Vitaly V. Gursky, Lena Panok, Ekaterina M. Myasnikova, Manu, Maria Samsonova, John Reinitz, Alexander M. Samsonov:
Mechanisms of gap gene expression canalization in the Drosophila blastoderm. BMC Syst. Biol. 5: 118 (2011)
2000 – 2009
- 2009
- [j13]Ekaterina M. Myasnikova, Svetlana Surkova, Lena Panok, Maria Samsonova, John Reinitz:
Estimation of errors introduced by confocal imaging into the data on segmentation gene expression in Drosophila. Bioinform. 25(3): 346-352 (2009) - [j12]Andrei Pisarev, Ekaterina Poustelnikova, Maria Samsonova, John Reinitz:
FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution. Nucleic Acids Res. 37(Database-Issue): 560-566 (2009) - [j11]Manu, Svetlana Surkova, Alexander V. Spirov, Vitaly V. Gursky, Hilde Janssens, Ah-Ram Kim, Ovidiu Radulescu, Carlos E. Vanario-Alonso, David H. Sharp, Maria Samsonova, John Reinitz:
Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors. PLoS Comput. Biol. 5(3) (2009) - [c10]Ekaterina M. Myasnikova, Svetlana Surkova, Maria Samsonova, John Reinitz:
Estimation of Errors in Gene Expression Data Introduced by Diffractive Blurring of Confocal Images. IMVIP 2009: 53-58 - 2007
- [j10]Yu Feng Wu, Ekaterina M. Myasnikova, John Reinitz:
Master equation simulation analysis of immunostained Bicoid morphogen gradient. BMC Syst. Biol. 1: 52 (2007) - 2006
- [j9]Theodore J. Perkins, Johannes Jaeger, John Reinitz, Leon Glass:
Reverse Engineering the Gap Gene Network of Drosophila melanogaster. PLoS Comput. Biol. 2(5) (2006) - 2005
- [j8]Andrei Pisarev, Ekaterina Poustelnikova, Konstantin Kozlov, Ekaterina M. Myasnikova, Maria Samsonova, John Reinitz:
ImageServer, a Tool for On-line Processing and Analysis of Biological Images. J. Integr. Bioinform. 2(1) (2005) - 2004
- [j7]Ekaterina Poustelnikova, Andrei Pisarev, Maxim Blagov, Maria Samsonova, John Reinitz:
A database for management of gene expression data in situ. Bioinform. 20(14): 2212-2221 (2004) - 2002
- [j6]Ralf Hofestädt, Nikolay A. Kolchanov, John Reinitz:
Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface). Silico Biol. 2(2): 35-36 (2002) - [j5]Konstantin Kozlov, Ekaterina M. Myasnikova, Andrei Pisarev, Maria Samsonova, John Reinitz:
A method for two-dimensional registration and construction of the two-dimensional atlas of gene expression patterns in situ. Silico Biol. 2(2): 125-141 (2002) - [j4]Alexander V. Spirov, Alexander B. Kazansky, Dmitry L. Timakin, John Reinitz:
Reconstruction of the Dynamics of Drosophila Genes Expression from Sets of Images Sharing a Common Pattern. Real Time Imaging 8(6): 507-518 (2002) - [c9]Ekaterina M. Myasnikova, Anastassia Samsonova, Maria Samsonova, John Reinitz:
Support vector regression applied to the determination of the developmental age of a Drosophila embryo from its segmentation gene expression patterns. ISMB 2002: 87-95 - 2001
- [j3]Ekaterina M. Myasnikova, Anastassia Samsonova, Konstantin Kozlov, Maria Samsonova, John Reinitz:
Registration of the expression patterns of Drosophila segmentation genes by two independent methods. Bioinform. 17(1): 3-12 (2001) - [c8]Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman:
Using of Evolutionary Computations in Image Processing for Quantitative Atlas of Drosophila Genes Expression. EvoWorkshops 2001: 374-383 - [c7]Igor N. Aizenberg, Ekaterina M. Myasnikova, Maria Samsonova, John Reinitz:
Application of the Neural Networks Based on Multi-valued Neurons to Classification of the Images of Gene Expression Patterns. Fuzzy Days 2001: 291-304 - [c6]John Reinitz:
Looking at functional genomics from inside the Drosophila blastoderm. German Conference on Bioinformatics 2001: 21 - 2000
- [j2]Alexander V. Spirov, Timothy Bowler, John Reinitz:
HOX Pro: a specialized database for clusters and networks of homeobox genes. Nucleic Acids Res. 28(1): 337-340 (2000) - [c5]Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman:
Experimental Determination of Drosophila Embryonic Coordinates by Genetic Algorithms, the Simplex method, and Their Hybrid. EvoWorkshops 2000: 97-106 - [c4]Maria Samsonova, Ekaterina Poustelnikova, Andrei Pisarev, John Reinitz:
Design of the Integrated Atlas of Segmentation Gene Expression in Situ. German Conference on Bioinformatics 2000: 125-132 - [c3]Konstantin Kozlov, Ekaterina M. Myasnikova, Maria Samsonova, John Reinitz, David Kosman:
Fast Redundant Dyadic Wavelet Transform in Application to Spatial Registration of the Expression Patterns of Drosophila Segmentation Genes. ICPR 2000: 3463-3466
1990 – 1999
- 1999
- [c2]Ekaterina M. Myasnikova, David Kosman, John Reinitz, Maria Samsonova:
Spatio-Temporal Registration of the Expression Patterns of Drosophila Segmentation Genes. ISMB 1999: 195-201 - 1995
- [c1]Eric Mjolsness, Charles Garrett, John Reinitz, David H. Sharp:
Modeling the Connection Between Development and Evolution: Preliminary Report. Evolution and Biocomputation 1995: 103-122 - 1994
- [j1]L. W. Wright, J. B. Lichter, John Reinitz, Mark A. Shifman, Kenneth K. Kidd, Perry L. Miller:
Computer-assisted restriction mapping: an integrated approach to handling experimental uncertainty. Comput. Appl. Biosci. 10(4): 435-442 (1994)
Coauthor Index
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