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2010 – 2019
- 2017
[j12]Philip L. Tzou
, Xiaoqiu Huang, Robert W. Shafer:
NucAmino: a nucleotide to amino acid alignment optimized for virus gene sequences. BMC Bioinform. 18(1): 138:1-138:6 (2017)- 2011
- [j11]Kathleen M. Doherty, Priyanka Nakka, Bracken M. King, Soo-Yon Rhee, Susan P. Holmes, Robert W. Shafer, Mala L. Radhakrishnan:
A multifaceted analysis of HIV-1 protease multidrug resistance phenotypes. BMC Bioinform. 12: 477 (2011) - 2010
- [j10]Elizabeth C. Reuman, Severine Margeridon-Thermet, Harrison B. Caudill, Tommy F. Liu, Katyna Borroto-Esoda, Evguenia S. Svarovskaia, Susan P. Holmes, Robert W. Shafer:
A classification model for G-to-A hypermutation in hepatitis B virus ultra-deep pyrosequencing reads. Bioinform. 26(23): 2929-2932 (2010) - [j9]Kristof Theys, Koen Deforche, Gertjan Beheydt, Yves Moreau, Kristel Van Laethem, Philippe Lemey, Ricardo Camacho, Soo-Yon Rhee, Robert W. Shafer, Eric Van Wijngaerden, Anne-Mieke Vandamme:
Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape. BMC Bioinform. 11: 409 (2010)
2000 – 2009
- 2009
- [j8]Robert J. Gifford, Tommy F. Liu, Soo-Yon Rhee, Mark Kiuchi, Stéphane Hué, Deenan Pillay, Robert W. Shafer:
The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance. Bioinform. 25(9): 1197-1198 (2009) - 2008
- [j7]Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, Soo-Yon Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel:
Viral Population Estimation Using Pyrosequencing. PLoS Comput. Biol. 4(5) (2008) - 2007
- [j6]Soo-Yon Rhee, Tommy F. Liu, Susan P. Holmes, Robert W. Shafer:
HIV-1 Subtype B Protease and Reverse Transcriptase Amino Acid Covariation. PLoS Comput. Biol. 3(5) (2007) - 2006
- [c1]Ray S. Lin, Soo-Yon Rhee, Robert W. Shafer, Amar K. Das:
Prediction of HIV Mutation Changes based on Treatment History. AMIA 2006 - 2003
- [j5]Soo-Yon Rhee, Matthew J. Gonzales, Rami Kantor, Bradley J. Betts, Jaideep Ravela, Robert W. Shafer:
Human immunodeficiency virus reverse transcriptase and protease sequence database. Nucleic Acids Res. 31(1): 298-303 (2003) - 2002
- [j4]Matthew J. Gonzales, Jonathan M. Dugan, Robert W. Shafer:
Synonymous-non-synonymous mutation rates between sequences containing ambiguous nucleotides (Syn-SCAN). Bioinform. 18(6): 886-887 (2002) - 2001
- [j3]Rami Kantor, Rhoderick Machekano, Matthew J. Gonzales, Kathryn Dupnik, Jonathan M. Schapiro, Robert W. Shafer:
Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database: an expanded data model integrating natural language text and sequence analysis programs. Nucleic Acids Res. 29(1): 296-299 (2001) - 2000
- [j2]Robert W. Shafer, Duane R. Jung, Bradley J. Betts, Yinong Xi, Matthew J. Gonzales:
Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database. Nucleic Acids Res. 28(1): 346-348 (2000)
1990 – 1999
- 1999
- [j1]Robert W. Shafer, Derek Stevenson, Bryan Chan:
Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database. Nucleic Acids Res. 27(1): 348-352 (1999)
Coauthor Index
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