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ORCIDItsik Pe'er
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- affiliation: Columbia University, New York City, USA
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2020 – today
- 2024
[c26]Philippe Chlenski, Ethan Turok, Antonio Khalil Moretti, Itsik Pe'er:
Fast Hyperboloid Decision Tree Algorithms. ICLR 2024- [i14]George I. Austin
, Itsik Pe'er, Tal Korem:
Distributional bias compromises leave-one-out cross-validation. CoRR abs/2406.01652 (2024) - [i13]Hanming Yang, Antonio Khalil Moretti, Sebastian Macaluso, Philippe Chlenski, Christian A. Naesseth, Itsik Pe'er:
Variational Pseudo Marginal Methods for Jet Reconstruction in Particle Physics. CoRR abs/2406.03242 (2024) - [i12]Philippe Chlenski, Quentin Chu, Itsik Pe'er:
Mixed-Curvature Decision Trees and Random Forests. CoRR abs/2406.05227 (2024) - [i11]Philippe Chlenski, Quentin Chu, Raiyan R. Khan, Antonio Khalil Moretti, Itsik Pe'er:
Mixed-curvature decision trees and random forests. CoRR abs/2410.13879 (2024) - 2023
- [i10]Philippe Chlenski, Ethan Turok, Antonio Khalil Moretti, Itsik Pe'er:
Fast hyperboloid decision tree algorithms. CoRR abs/2310.13841 (2023) - 2022
- [j21]Itsik Pe'er:
Special Issue: RECOMB 2022, Part 1. J. Comput. Biol. 29(11): 1155 (2022) - [j20]Itsik Pe'er:
Special Issue: RECOMB 2022, Part 2. J. Comput. Biol. 29(12): 1269 (2022) - [c25]Ghada Almashaqbeh, Ran Canetti, Yaniv Erlich, Jonathan Gershoni, Tal Malkin, Itsik Pe'er, Anna Roitburd-Berman, Eran Tromer:
Unclonable Polymers and Their Cryptographic Applications. EUROCRYPT (1) 2022: 759-789 - [c24]Adele Myers, Saiteja Utpala, Shubham Talbar, Sophia Sanborn, Christian Shewmake, Claire Donnat, Johan Mathe, Rishi Sonthalia, Xinyue Cui, Tom Szwagier, Arthur Pignet, Andri Bergsson, Søren Hauberg, Dmitriy Nielsen, Stefan Sommer, David A. Klindt, Erik Hermansen, Melvin Vaupel, Benjamin A. Dunn, Jeffrey Xiong, Noga Aharony, Itsik Pe'er, Felix Ambellan, Martin Hanik, Esfandiar Nava-Yazdani, Christoph von Tycowicz, Nina Miolane:
ICLR 2022 Challenge for Computational Geometry & Topology: Design and Results. TAG-ML 2022: 269-276 - [e1]Itsik Pe'er:
Research in Computational Molecular Biology - 26th Annual International Conference, RECOMB 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings. Lecture Notes in Computer Science 13278, Springer 2022, ISBN 978-3-031-04748-0 [contents] - [i9]Adele Myers, Saiteja Utpala, Shubham Talbar, Sophia Sanborn, Christian Shewmake, Claire Donnat, Johan Mathe, Umberto Lupo, Rishi Sonthalia, Xinyue Cui, Tom Szwagier, Arthur Pignet, Andri Bergsson, Søren Hauberg, Dmitriy Nielsen, Stefan Sommer, David A. Klindt, Erik Hermansen, Melvin Vaupel, Benjamin A. Dunn, Jeffrey Xiong, Noga Aharony, Itsik Pe'er, Felix Ambellan, Martin Hanik, Esfandiar Nava-Yazdani, Christoph von Tycowicz, Nina Miolane:
ICLR 2022 Challenge for Computational Geometry and Topology: Design and Results. CoRR abs/2206.09048 (2022) - [i8]Ghada Almashaqbeh, Ran Canetti, Yaniv Erlich, Jonathan Gershoni, Tal Malkin, Itsik Pe'er, Anna Roitburd-Berman, Eran Tromer:
Unclonable Polymers and Their Cryptographic Applications. IACR Cryptol. ePrint Arch. 2022: 658 (2022) - 2021
- [j19]Md Shariful Islam Bhuyan, Itsik Pe'er, M. Sohel Rahman:
SICaRiO: short indel call filtering with boosting. Briefings Bioinform. 22(4) (2021) - [c23]Yining Liu, Sachin Kadyan, Itsik Pe'er:
A Recovery Algorithm and Pooling Designs for One-Stage Noisy Group Testing Under the Probabilistic Framework. AlCoB 2021: 42-53 - [c22]Antonio Khalil Moretti, Liyi Zhang, Christian A. Naesseth, Hadiah Venner, David M. Blei, Itsik Pe'er:
variational combinatorial sequential monte carlo methods for bayesian phylogenetic inference. UAI 2021: 971-981 - [i7]Antonio Khalil Moretti, Liyi Zhang, Christian A. Naesseth, Hadiah Venner, David M. Blei, Itsik Pe'er:
Variational Combinatorial Sequential Monte Carlo Methods for Bayesian Phylogenetic Inference. CoRR abs/2106.00075 (2021) - 2020
- [j18]Rose Orenbuch, Ioan Filip, Devon Comito, Jeffrey Shaman, Itsik Pe'er, Raul Rabadan:
arcasHLA: high-resolution HLA typing from RNAseq. Bioinform. 36(1): 33-40 (2020) - [j17]Tyler A. Joseph, Liat Shenhav, João B. Xavier, Eran Halperin, Itsik Pe'er:
Compositional Lotka-Volterra describes microbial dynamics in the simplex. PLoS Comput. Biol. 16(5) (2020) - [c21]Antonio Khalil Moretti, Zizhao Wang, Luhuan Wu, Iddo Drori, Itsik Pe'er:
Variational Objectives for Markovian Dynamics with Backward Simulation. ECAI 2020: 1371-1378 - [c20]Tyler A. Joseph, Amey P. Pasarkar, Itsik Pe'er:
Efficient and Accurate Inference of Microbial Trajectories from Longitudinal Count Data. RECOMB 2020: 255-256
2010 – 2019
- 2019
- [j16]Antonio Khalil Moretti, Andrew Stirn, Gabriel Marks, Itsik Pe'er:
Autoencoding Topographic Factors. J. Comput. Biol. 26(6): 546-560 (2019) - [c19]Antonio Khalil Moretti, Zizhao Wang, Luhuan Wu, Itsik Pe'er:
Smoothing Nonlinear Variational Objectives with Sequential Monte Carlo. DGS@ICLR 2019 - [i6]Antonio Khalil Moretti, Zizhao Wang, Luhuan Wu, Iddo Drori, Itsik Pe'er:
Particle Smoothing Variational Objectives. CoRR abs/1909.09734 (2019) - [i5]Iddo Drori, Darshan Thaker, Arjun Srivatsa, Daniel Jeong, Yueqi Wang, Linyong Nan, Fan Wu, Dimitri Leggas, Jinhao Lei, Weiyi Lu, Weilong Fu, Yuan Gao, Sashank Karri, Anand Kannan, Antonio Khalil Moretti, Mohammed AlQuraishi, Chen Keasar, Itsik Pe'er:
Accurate Protein Structure Prediction by Embeddings and Deep Learning Representations. CoRR abs/1911.05531 (2019) - 2018
- [c18]Tyler A. Joseph, Itsik Pe'er:
Inference of Population Structure from Ancient DNA. RECOMB 2018: 90-104 - [i4]Iddo Drori, Isht Dwivedi, Pranav Shrestha, Jeffrey Wan, Yueqi Wang, Yunchu He, Anthony Mazza, Hugh Krogh-Freeman, Dimitri Leggas, Kendal Sandridge, Linyong Nan, Kaveri A. Thakoor, Chinmay Joshi, Sonam Goenka, Chen Keasar, Itsik Pe'er:
High Quality Prediction of Protein Q8 Secondary Structure by Diverse Neural Network Architectures. CoRR abs/1811.07143 (2018) - 2017
- [i3]Avinash Bukkittu, Baihan Lin, Trung Vu, Itsik Pe'er:
Parkinson's Disease Digital Biomarker Discovery with Optimized Transitions and Inferred Markov Emissions. CoRR abs/1711.04078 (2017) - 2016
- [j15]Shuo Yang, Shai Carmi, Itsik Pe'er:
Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs. J. Comput. Biol. 23(6): 495-507 (2016) - 2015
- [c17]Shuo Yang, Shai Carmi, Itsik Pe'er:
Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs. RECOMB 2015: 340-353 - 2013
- [j14]Pier Francesco Palamara, Itsik Pe'er:
Inference of historical migration rates via haplotype sharing. Bioinform. 29(13): 180-188 (2013) - [c16]Angad Pal Singh, Samreen Zafer, Itsik Pe'er:
MetaSeq: Privacy Preserving Meta-Analysis of Sequencing-Based Association Studies. Pacific Symposium on Biocomputing 2013: 356-367 - 2011
- [j13]Yufeng Shen, Ruijie Song, Itsik Pe'er:
Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association. Bioinform. 27(14): 1995-1997 (2011) - [j12]Yufeng Shen, Yiwei Gu, Itsik Pe'er:
A Hidden Markov Model for Copy Number Variant prediction from whole genome resequencing data. BMC Bioinform. 12(S-6): S4 (2011) - [j11]Manu N. Setty, Alexander Gusev, Itsik Pe'er:
HLA Type Inference via Haplotypes Identical by Descent. J. Comput. Biol. 18(3): 483-493 (2011) - [c15]Arthi Ramachandran, Mariann Micsinai, Itsik Pe'er:
CONDEX: Copy number detection in exome sequences. BIBM Workshops 2011: 87-93 - [c14]Yufeng Shen, Yee Him Cheung, Shuang Wang, Itsik Pe'er:
A parametric Bayesian method to test the association of rare variants. BIBM Workshops 2011: 137-143 - [c13]Yufeng Shen, Yiwei Gu, Itsik Pe'er:
Poster: A Hidden Markov Model for Copy Number Variant prediction from Whole genome resequencing data. ICCABS 2011: 260 - [c12]Yufeng Shen, Ruijie Song, Itsik Pe'er:
Workshop: Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association. ICCABS 2011: 276 - 2010
- [j10]Ninad Dewal, Matthew L. Freedman, Thomas LaFramboise, Itsik Pe'er:
Power to detect selective allelic amplification in genome-wide scans of tumor data. Bioinform. 26(4): 518-528 (2010) - [c11]Manu N. Setty, Alexander Gusev, Itsik Pe'er:
HLA Type Inference via Haplotypes Identical by Descent. RECOMB 2010: 491-505
2000 – 2009
- 2009
- [c10]Snehit Prabhu, Itsik Pe'er:
Overlapping Pools for High Throughput Targeted Resequencing. RECOMB 2009: 270 - 2008
- [j9]Julia Stoyanovich, Itsik Pe'er:
MutaGeneSys: estimating individual disease susceptibility based on genome-wide SNP array data. Bioinform. 24(3): 440-442 (2008) - [j8]Tamar Barzuza, Jacques S. Beckmann, Ron Shamir, Itsik Pe'er:
Computational Problems in Perfect Phylogeny Haplotyping: Typing without Calling the Allele. IEEE ACM Trans. Comput. Biol. Bioinform. 5(1): 101-109 (2008) - 2004
- [j7]Itsik Pe'er, Tal Pupko, Ron Shamir, Roded Sharan:
Incomplete Directed Perfect Phylogeny. SIAM J. Comput. 33(3): 590-607 (2004) - [c9]Tamar Barzuza, Jacques S. Beckmann, Ron Shamir, Itsik Pe'er:
Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs. CPM 2004: 14-31 - 2003
- [c8]Itsik Pe'er, Jacques S. Beckmann:
Resolution of haplotypes and haplotype frequencies from SNP genotypes of pooled samples. RECOMB 2003: 237-246 - 2002
- [j6]Tal Pupko, Itsik Pe'er, Masami Hasegawa, Dan Graur, Nir Friedman:
A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families. Bioinform. 18(8): 1116-1123 (2002) - [j5]Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan:
On the Complexity of Positional Sequencing by Hybridization. J. Comput. Biol. 8(4): 361-371 (2002) - [j4]Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko:
A Structural EM Algorithm for Phylogenetic Inference. J. Comput. Biol. 9(2): 331-353 (2002) - [c7]Itsik Pe'er, Ron Shamir, Roded Sharan:
On the Generality of Phylogenies from Incomplete Directed Characters. SWAT 2002: 358-367 - 2001
- [c6]Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko:
A structural EM algorithm for phylogenetic inference. RECOMB 2001: 132-140 - [i2]Piotr Berman, Amir Ben-Dor, Itsik Pe'er, Roded Sharan, Ron Shamir:
On the Complexity of Positional Sequencing by Hybridization. Electron. Colloquium Comput. Complex. TR01 (2001) - 2000
- [j3]Richard M. Karp, Itsik Pe'er, Ron Shamir:
An Algorithm Combining Discrete and Continuous Methods for Optical Mapping. J. Comput. Biol. 7(5): 745-760 (2000) - [c5]Itsik Pe'er, Ron Shamir, Roded Sharan:
Incomplete Directed Perfect Phylogeny. CPM 2000: 143-153 - [c4]Itsik Pe'er, Ron Shamir:
Spectrum Alignment: Efficient Resequencing by Hybridization. ISMB 2000: 260-268
1990 – 1999
- 1999
- [c3]Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan:
On the Complexity of Positional Sequencing by Hybridization. CPM 1999: 88-100 - [c2]Richard M. Karp, Itsik Pe'er, Ron Shamir:
An Algorithm Combining Discrete and Continuous Methods for Optical Mapping. ISMB 1999: 159-168 - 1998
- [i1]Itsik Pe'er, Ron Shamir:
The median problems for breakpoints are NP-complete. Electron. Colloquium Comput. Complex. TR98 (1998) - 1997
- [j2]Itsik Pe'er, Ron Shamir:
Realizing Interval Graphs with Size and Distance Constraints. SIAM J. Discret. Math. 10(4): 662-687 (1997) - [j1]Itsik Pe'er, Ron Shamir:
Satisfiability Problems on Intervals and Unit Intervals. Theor. Comput. Sci. 175(2): 349-372 (1997) - 1995
- [c1]Itsik Pe'er, Ron Shamir:
Interval Graphs with Side (and Size) Constraints. ESA 1995: 142-154
Coauthor Index
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