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2010 – 2019
- 2018
[j10]Aliyu Musa
, Laleh Soltan Ghoraie, Shu-Dong Zhang, Galina V. Glazko, Olli Yli-Harja, Matthias Dehmer, Benjamin Haibe-Kains, Frank Emmert-Streib:
A review of connectivity map and computational approaches in pharmacogenomics. Briefings Bioinform. 19(3): 506-523 (2018)- 2017
- [j9]Aliyu Musa, Laleh Soltan Ghoraie, Shu-Dong Zhang, Galina V. Glazko, Olli Yli-Harja, Matthias Dehmer, Benjamin Haibe-Kains, Frank Emmert-Streib:
A review of connectivity map and computational approaches in pharmacogenomics. Briefings Bioinform. 18(5): 903 (2017) - [j8]Gayathri Thillaiyampalam, Fabio Liberante, Liam Murray, Chris Cardwell, Ken I. Mills, Shu-Dong Zhang:
An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping. BMC Bioinform. 18(1): 581:1-581:16 (2017) - 2016
- [j7]Paul G. O'Reilly, Qing Wen, Peter Bankhead, Philip D. Dunne, Darragh G. McArt, Suzanne McPherson, Peter Hamilton, Ken I. Mills, Shu-Dong Zhang:
QUADrATiC: scalable gene expression connectivity mapping for repurposing FDA-approved therapeutics. BMC Bioinform. 17: 198 (2016) - [j6]Qing Wen, Chang Sik Kim, Peter Hamilton, Shu-Dong Zhang:
A gene-signature progression approach to identifying candidate small-molecule cancer therapeutics with connectivity mapping. BMC Bioinform. 17: 211 (2016) - 2014
- [c2]Chang Sik Kim, Qing Wen, Shu-Dong Zhang:
Integrative analysis of chemo-transcriptomic profiles for drug-feature specific gene expression signatures. BIBM 2014: 113-118 - [c1]Chang Sik Kim, Seungwoo Hwang, Shu-Dong Zhang:
RMA with quantile normalization mixes biological signals between different sample groups in microarray data analysis. BIBM 2014: 139-143 - 2013
- [j5]Darragh G. McArt, Peter Bankhead, Philip D. Dunne, Manuel Salto-Tellez, Peter Hamilton, Shu-Dong Zhang:
cudaMap: a GPU accelerated program for gene expression connectivity mapping. BMC Bioinform. 14: 305 (2013)
2000 – 2009
- 2009
- [j4]Shu-Dong Zhang, Timothy W. Gant:
sscMap: An extensible Java application for connecting small-molecule drugs using gene-expression signatures. BMC Bioinform. 10 (2009) - 2008
- [j3]Shu-Dong Zhang, Timothy W. Gant:
A simple and robust method for connecting small-molecule drugs using gene-expression signatures. BMC Bioinform. 9 (2008) - 2005
- [j2]Shu-Dong Zhang, Timothy W. Gant:
Effect of pooling samples on the efficiency of comparative studies using microarrays. Bioinform. 21(24): 4378-4383 (2005) - 2004
- [j1]Shu-Dong Zhang, Timothy W. Gant:
A statistical framework for the design of microarray experiments and effective detection of differential gene expression. Bioinform. 20(16): 2821-2828 (2004)
Coauthor Index
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