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2020 – today
- 2024
[i1]Ayumu Saito, Jiju Poovvancheri:
Point-JEPA: A Joint Embedding Predictive Architecture for Self-Supervised Learning on Point Cloud. CoRR abs/2404.16432 (2024)- 2023
- [c3]Ayumu Saito
, Reynald Affeldt:
Experimenting with an Intrinsically-Typed Probabilistic Programming Language in Coq. APLAS 2023: 182-202 - [c2]Reynald Affeldt, Cyril Cohen, Ayumu Saito:
Semantics of Probabilistic Programs using s-Finite Kernels in Coq. CPP 2023: 3-16 - 2022
- [c1]Ayumu Saito, Reynald Affeldt:
Towards a Practical Library for Monadic Equational Reasoning in Coq. MPC 2022: 151-177
2010 – 2019
- 2016
- [p1]Ayumu Saito, Masao Nagasaki, Hiroshi Matsuno, Satoru Miyano:
Hybrid Functional Petri Net with Extension for Dynamic Pathway Modeling. Modeling in Systems Biology, The Petri Net Approach 2016: 101-120 - 2013
- [j14]Masao Nagasaki, André Fujita, Yayoi Sekiya, Ayumu Saito, Emi Ikeda, Chen Li, Satoru Miyano:
XiP: a computational environment to create, extend and share workflows. Bioinform. 29(1): 137-139 (2013) - 2012
- [j13]Shigeo Fujimori, Naoya Hirai, Kazuyo Masuoka, Tomohiro Oshikubo, Tatsuhiro Yamashita, Takanori Washio, Ayumu Saito, Masao Nagasaki, Satoru Miyano, Etsuko Miyamoto-Sato:
IRView: a database and viewer for protein interacting regions. Bioinform. 28(14): 1949-1950 (2012) - 2011
- [j12]Chuan Hock Koh, Masao Nagasaki, Ayumu Saito, Chen Li, Limsoon Wong, Satoru Miyano:
MIRACH: efficient model checker for quantitative biological pathway models. Bioinform. 27(5): 734-735 (2011) - [j11]Masao Nagasaki, Ayumu Saito, André Fujita, Georg Tremmel, Kazuko Ueno, Emi Ikeda, Euna Jeong, Satoru Miyano:
Systems biology model repository for macrophage pathway simulation. Bioinform. 27(11): 1591-1593 (2011) - [j10]Euna Jeong, Masao Nagasaki, Emi Ikeda, Yayoi Sekiya, Ayumu Saito, Satoru Miyano:
CSO validator: improving manual curation workflow for biological pathways. Bioinform. 27(17): 2471-2472 (2011) - 2010
- [j9]Chuan Hock Koh, Masao Nagasaki, Ayumu Saito, Limsoon Wong, Satoru Miyano:
DA 1.0: parameter estimation of biological pathways using data assimilation approach. Bioinform. 26(14): 1794-1796 (2010) - [j8]Chen Li, Masao Nagasaki, Ayumu Saito, Satoru Miyano:
Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram. BMC Syst. Biol. 4: 39 (2010) - [j7]Masao Nagasaki, Ayumu Saito, Euna Jeong, Chen Li, Kaname Kojima, Emi Ikeda, Satoru Miyano:
Cell Illustrator 4.0: A Computational Platform for Systems Biology. Silico Biol. 10(1-2): 5-26 (2010)
2000 – 2009
- 2009
- [b1]Masao Nagasaki, Ayumu Saito, Atsushi Doi, Hiroshi Matsuno, Satoru Miyano:
Foundations of Systems Biology - Using Cell Illustrator® and Pathway Databases. Computational Biology 13, Springer 2009, ISBN 978-1-84882-022-7, pp. I-XII, 1-155 - [j6]Shamim Ahmed, Ayumu Saito, Miho Suzuki, Naoto Nemoto, Koichi Nishigaki:
Host-parasite relations of bacteria and phages can be unveiled by Oligostickiness, a measure of relaxed sequence similarity. Bioinform. 25(5): 563-570 (2009) - 2008
- [j5]Kazuyuki Numata, Ryo Yoshida, Masao Nagasaki, Ayumu Saito, Seiya Imoto, Satoru Miyano:
ExonMiner: Web service for analysis of GeneChip Exon array data. BMC Bioinform. 9 (2008) - [j4]Masao Nagasaki, Ayumu Saito, Chen Li, Euna Jeong, Satoru Miyano:
Systematic reconstruction of TRANSPATH data into Cell System Markup Language. BMC Syst. Biol. 2: 53 (2008) - 2007
- [j3]Ayumu Saito, Masao Nagasaki, Masaaki Oyama, Hiroko Kozuka-Hata, Kentaro Semba, Sumio Sugano, Tadashi Yamamoto, Satoru Miyano:
AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction. BMC Bioinform. 8 (2007) - [j2]Euna Jeong, Masao Nagasaki, Ayumu Saito, Satoru Miyano:
Cell System Ontology: Representation for Modeling, Visualizing, and Simulating Biological Pathways. Silico Biol. 7(6): 623-638 (2007) - 2002
- [j1]Koichi Nishigaki, Ayumu Saito:
Genome structures embossed by oligonucleotide-stickiness. Bioinform. 18(9): 1153-1161 (2002)
Coauthor Index
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