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ORCIDCurtis Huttenhower
Person information
- award (2011): Presidential Early Career Award for Scientists and Engineers
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2020 – today
- 2022
[j33]Alexander G. McFarland
, Nolan W. Kennedy, Carolyn E. Mills, Danielle Tullman-Ercek, Curtis Huttenhower, Erica M. Hartmann:
Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper. Bioinform. 38(3): 612-620 (2022)- 2021
- [j32]Yancong Zhang, Kelsey N. Thompson, Curtis Huttenhower, Eric A. Franzosa:
Statistical approaches for differential expression analysis in metatranscriptomics. Bioinform. 37(Supplement): 34-41 (2021) - [j31]Siyuan Ma, Boyu Ren, Himel Mallick, Yo Sup Moon, Emma H. Schwager, Sagun Maharjan, Timothy L. Tickle, Yiren Lu, Rachel N. Carmody, Eric A. Franzosa, Lucas Janson, Curtis Huttenhower:
A statistical model for describing and simulating microbial community profiles. PLoS Comput. Biol. 17(9) (2021) - [j30]Himel Mallick, Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen, Timothy L. Tickle, George Weingart, Boyu Ren, Emma H. Schwager, Suvo Chatterjee, Kelsey N. Thompson, Jeremy E. Wilkinson, Ayshwarya Subramanian, Yiren Lu, Levi Waldron, Joseph N. Paulson, Eric A. Franzosa, Héctor Corrada Bravo, Curtis Huttenhower:
Multivariable association discovery in population-scale meta-omics studies. PLoS Comput. Biol. 17(11) (2021)
2010 – 2019
- 2018
- [j29]Lauren J. McIver, Galeb Abu-Ali, Eric A. Franzosa, Randall Schwager, Xochitl C. Morgan, Levi Waldron, Nicola Segata, Curtis Huttenhower:
bioBakery: a meta'omic analysis environment. Bioinform. 34(7): 1235-1237 (2018) - 2017
- [j28]Emma H. Schwager, Himel Mallick, Steffen Ventz, Curtis Huttenhower:
A Bayesian method for detecting pairwise associations in compositional data. PLoS Comput. Biol. 13(11) (2017) - [c4]Soha Hassoun, Curtis Huttenhower:
A Workshop on Microbiomics, Metagenomics, and Metabolomics. BCB 2017: 776 - 2016
- [j27]Daniela Börnigen, Svitlana Tyekucheva, Xiaodong Wang, Jennifer R. Rider, Gwo-Shu Lee, Lorelei A. Mucci, Christopher Sweeney, Curtis Huttenhower:
Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer. PLoS Comput. Biol. 12(4) (2016) - 2015
- [j26]James Kaminski, Molly K. Gibson, Eric A. Franzosa, Nicola Segata, Gautam Dantas, Curtis Huttenhower:
High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED. PLoS Comput. Biol. 11(12) (2015) - 2014
- [j25]Christoph Bernau, Markus Riester, Anne-Laure Boulesteix, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron, Lorenzo Trippa:
Cross-study validation for the assessment of prediction algorithms. Bioinform. 30(12): 105-112 (2014) - [j24]Sihai Dave Zhao, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron:
Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis. Bioinform. 30(21): 3062-3069 (2014) - [j23]Katherine Huang, Arthur Brady, Anup Mahurkar, Owen White, Dirk Gevers, Curtis Huttenhower, Nicola Segata:
MetaRef: a pan-genomic database for comparative and community microbial genomics. Nucleic Acids Res. 42(Database-Issue): 617-624 (2014) - 2013
- [j22]Benjamin Frederick Ganzfried, Markus Riester, Benjamin Haibe-Kains, Thomas Risch, Svitlana Tyekucheva, Ina Jazic, Xin Victoria Wang, Mahnaz Ahmadifar, Michael J. Birrer, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron:
curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome. Database J. Biol. Databases Curation 2013 (2013) - [j21]Omry Koren, Dan Knight, Antonio González, Levi Waldron, Nicola Segata, Rob Knight, Curtis Huttenhower, Ruth E. Ley:
A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets. PLoS Comput. Biol. 9(1) (2013) - [j20]Regina Joice, Vagheesh Narasimhan, Jacqui Montgomery, Amar Bir Sidhu, Keunyoung Oh, Evan Meyer, Willythssa Pierre-Louis, Karl Seydel, Danny Milner, Kim Williamson, Roger Wiegand, Daouda Ndiaye, Johanna Daily, Dyann Wirth, Terrie Taylor, Curtis Huttenhower, Matthias Marti:
Inferring Developmental Stage Composition from Gene Expression in Human Malaria. PLoS Comput. Biol. 9(12) (2013) - 2012
- [j19]Sahar Abubucker, Nicola Segata, Johannes Goll, Alyxandria M. Schubert, Jacques Izard, Brandi L. Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T. Kelley, Barbara A. Methé, Patrick D. Schloss, Dirk Gevers, Makedonka Dautova Mitreva, Curtis Huttenhower:
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome. PLoS Comput. Biol. 8(6) (2012) - [j18]Karoline Faust, Jarupon Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower:
Microbial Co-occurrence Relationships in the Human Microbiome. PLoS Comput. Biol. 8(7) (2012) - [j17]Dirk Gevers, Mihai Pop, Patrick D. Schloss, Curtis Huttenhower:
Bioinformatics for the Human Microbiome Project. PLoS Comput. Biol. 8(11) (2012) - [j16]Xochitl C. Morgan, Curtis Huttenhower:
Chapter 12: Human Microbiome Analysis. PLoS Comput. Biol. 8(12) (2012) - 2011
- [j15]Levi Waldron, Melania Pintilie, Ming-Sound Tsao, Frances A. Shepherd, Curtis Huttenhower, Igor Jurisica:
Optimized application of penalized regression methods to diverse genomic data. Bioinform. 27(24): 3399-3406 (2011) - 2010
- [j14]Ana Pop, Curtis Huttenhower, Anjali Iyer-Pascuzzi, Philip N. Benfey, Olga G. Troyanskaya:
Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana. BMC Syst. Biol. 4: 180 (2010) - [j13]Curtis Huttenhower, Oliver Hofmann:
A Quick Guide to Large-Scale Genomic Data Mining. PLoS Comput. Biol. 6(5) (2010) - [j12]Christopher Y. Park, David C. Hess, Curtis Huttenhower, Olga G. Troyanskaya:
Simultaneous Genome-Wide Inference of Physical, Genetic, Regulatory, and Functional Pathway Components. PLoS Comput. Biol. 6(11) (2010)
2000 – 2009
- 2009
- [j11]Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Amy A. Caudy, David C. Hess, Olga G. Troyanskaya:
The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction. Bioinform. 25(18): 2404-2410 (2009) - [j10]Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller:
Detailing regulatory networks through large scale data integration. Bioinform. 25(24): 3267-3274 (2009) - [j9]Curtis Huttenhower, Sajid O. Mehmood, Olga G. Troyanskaya:
Graphle: Interactive exploration of large, dense graphs. BMC Bioinform. 10: 417 (2009) - [j8]Edoardo M. Airoldi, Curtis Huttenhower, David Gresham, Charles Lu, Amy A. Caudy, Maitreya J. Dunham, James R. Broach, David Botstein, Olga G. Troyanskaya:
Predicting Cellular Growth from Gene Expression Signatures. PLoS Comput. Biol. 5(1) (2009) - [j7]Matthew A. Hibbs, Chad L. Myers, Curtis Huttenhower, David C. Hess, Kai Li, Amy A. Caudy, Olga G. Troyanskaya:
Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis. PLoS Comput. Biol. 5(3) (2009) - [j6]Maria D. Chikina, Curtis Huttenhower, Coleen T. Murphy, Olga G. Troyanskaya:
Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans. PLoS Comput. Biol. 5(6) (2009) - 2008
- [j5]Curtis Huttenhower, Mark Schroeder, Maria D. Chikina, Olga G. Troyanskaya:
The Sleipnir library for computational functional genomics. Bioinform. 24(13): 1559-1561 (2008) - [c3]Curtis Huttenhower, Olga G. Troyanskaya:
Assessing the functional structure of genomic data. ISMB 2008: 330-338 - 2007
- [j4]Matthew A. Hibbs, David C. Hess, Chad L. Myers, Curtis Huttenhower, Kai Li, Olga G. Troyanskaya:
Exploring the functional landscape of gene expression: directed search of large microarray compendia. Bioinform. 23(20): 2692-2699 (2007) - [j3]Curtis Huttenhower, Avi I. Flamholz, Jessica N. Landis, Sauhard Sahi, Chad L. Myers, Kellen L. Olszewski, Matthew A. Hibbs, Nathan O. Siemers, Olga G. Troyanskaya, Hilary A. Coller:
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods. BMC Bioinform. 8 (2007) - 2006
- [j2]Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Olga G. Troyanskaya:
A scalable method for integration and functional analysis of multiple microarray datasets. Bioinform. 22(23): 2890-2897 (2006) - [j1]Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Huttenhower, Chad L. Myers, Olga G. Troyanskaya:
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool. BMC Bioinform. 7: 443 (2006) - 2005
- [c2]Curtis Huttenhower, Olga G. Troyanskaya:
A General Methodology for Integration of Microarray Data. CSB Workshops 2005: 109 - 2003
- [c1]Eric Nyberg, Teruko Mitamura, James P. Callan, Jaime G. Carbonell, Robert E. Frederking, Kevyn Collins-Thompson, Laurie Hiyakumoto, Yifen Huang, Curtis Huttenhower, Scott Judy, Jeongwoo Ko, Anna Kupsc, Lucian Vlad Lita, Vasco Pedro, David Svoboda, Benjamin Van Durme:
The JAVELIN Question-Answering System at TREC 2003: A Multi-Strategh Approach with Dynamic Planning. TREC 2003
Coauthor Index
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