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2020 – today
- 2024
[j12]Surabhi Datta
, Kyeryoung Lee, Hunki Paek, Frank J. Manion, Nneka Ofoegbu, Jingcheng Du, Ying Li, Liang-Chin Huang, Jingqi Wang, Bin Lin, Hua Xu, Xiaoyan Wang:
AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models. J. Am. Medical Informatics Assoc. 31(2): 375-385 (2024)- 2023
- [j11]Meng Zhang, Madhuri Sankaranarayanapillai, Jingcheng Du, Yang Xiang, Frank J. Manion, Marcelline R. Harris, Cooper Stansbury, Huy Anh Pham, Cui Tao:
Machine learning-based donor permission extraction from informed consent documents. BMC Bioinform. 24(1): 477 (2023) - 2022
- [c20]Jingqi Wang, Yaoyun Zhang, Bin Lin, Huy Anh Pham, Long He, Jingcheng Du, Frank J. Manion:
LANN: an Integrated Online Annotation Tool for Information Extraction. ICHI 2022: 461-464 - 2021
- [j10]Jingqi Wang, Noor Abu-El-Rub, Josh Gray, Huy Anh Pham, Yujia Zhou, Frank J. Manion, Mei Liu, Xing Song, Hua Xu, Masoud Rouhizadeh, Yaoyun Zhang:
COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model. J. Am. Medical Informatics Assoc. 28(6): 1275-1283 (2021) - [c19]Muhammad Amith, Marcelline R. Harris, Cooper Stansbury, Kathleen Ford, Frank J. Manion, Cui Tao:
Expressing and Executing Informed Consent Permissions using SWRL: The All of Us Use Case. AMIA 2021 - [i2]Muhammad Amith, Marcelline R. Harris, Cooper Stansbury, Kathleen Ford, Frank J. Manion, Cui Tao:
Expressing and Executing Informed Consent Permissions Using SWRL: The All of Us Use Case. CoRR abs/2108.10221 (2021) - 2020
- [i1]Jingqi Wang, Huy Anh Pham, Frank J. Manion, Masoud Rouhizadeh, Yaoyun Zhang:
COVID-19 SignSym: A fast adaptation of general clinical NLP tools to identify and normalize COVID-19 signs and symptoms to OMOP common data model. CoRR abs/2007.10286 (2020)
2010 – 2019
- 2019
- [j9]Muhammad Amith, Frank J. Manion, Chen Liang, Marcelline R. Harris, Dennis Wang, Yongqun He, Cui Tao:
Architecture and usability of OntoKeeper, an ontology evaluation tool. BMC Medical Informatics Decis. Mak. 19-S(4): 152:1-152:18 (2019) - [c18]Marcelline R. Harris, Frank J. Manion, Madhuri Sankaranarayanapillai, Hsing-yi Song, Marisa Conte, Cui Tao:
A Scoping Review to Identify Biobank Classification and Permissions to Share Metadata. AMIA 2019 - [c17]Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Marcelline R. Harris, Frank J. Manion, Cui Tao:
Refactoring and Expanding the Informed Consent Ontology (ICO). AMIA 2019 - [c16]Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Marcelline R. Harris, Elizabeth Umberfield, Frank J. Manion, Cui Tao:
Expanding the Representation of Permissions and Deontic Roles in the Informed Consent Ontology (ICO). AMIA 2019 - [c15]Jonathan M. Vajda, J. Neil Otte, Cooper Stansbury, Frank J. Manion, Marcelline R. Harris, Cui Tao:
Using Stases to Enrich Queries for When and Where Regulations Are in Force. ICBO 2019: 1 - 2018
- [c14]Frank J. Manion, Marcelline R. Harris, Muhamamd F. Amith, Cui Tao:
Development and Validation of an Ontological Representation of the US Common Rule. AMIA 2018 - [c13]Muhammad Amith, Frank J. Manion, Chen Liang, Marcelline R. Harris, Dennis Wang, Yongqun He, Cui Tao:
OntoKeeper: Semiotic-driven Ontology Evaluation Tool For Biomedical Ontologists. BIBM 2018: 1614-1617 - [c12]J. Neil Otte, Cooper Stansbury, Jonathan Vajda, Frank J. Manion, Elizabeth Umberfield, Yongqun He, Marcelline R. Harris, Jihad S. Obeid, Mathias Brochhausen, William D. Duncan, Cui Tao:
Coordinated Evolution of Ontologies of Informed Consent. ICBO 2018 - 2017
- [c11]Marcelline R. Harris, Frank J. Manion, Hsing-yi Song, Yongqun He, Muhamamd F. Amith, Cui Tao:
From Scoping Review to Metadata: An Evidence-Based Approach to Identifying Informed Consent Metadata for Biorepositories. AMIA 2017 - [c10]Marina Z. Matatova, Paul Fearn, Eric B. Durbin, Gary Levin, Frank J. Manion, Patrick Mergler:
Evaluation of the Surveillance, Epidemiology, and End Results Data Management System (SEER*DMS) to support the efforts in enhancing U.S cancer surveillance. AMIA 2017 - [c9]Muhammad Amith, Frank J. Manion, Marcelline R. Harris, Yaoyun Zhang, Hua Xu, Cui Tao:
Expressing Biomedical Ontologies in Natural Language for Expert Evaluation. MedInfo 2017: 838-842 - 2016
- [c8]Airong Luo, Marcelline R. Harris, Frank J. Manion, Barbara Mirel:
A Research Capability Framework. AMIA 2016 - 2014
- [c7]Frank J. Manion, Elizabeth Eisenhauer, Alla Karnovsky, Yongqun He, Yu Lin, Marcelline R. Harris:
Analysis of Content Coverage for Informed Consent Concepts. AMIA 2014 - [c6]Yu Lin, Marcelline R. Harris, Frank J. Manion, Elizabeth Eisenhauer, Bin Zhao, Wei Shi, Alla Karnovsky, Yongqun He:
Development of a BFO-Based Informed Consent Ontology (ICO). ICBO 2014: 84-86 - 2012
- [c5]Anjali Bhandari, Wei Shi, John Harju, Frank J. Manion, Becky Marshall, Andrew Chang, Rebecca M. Minter:
Extending OpenClinica using Web 2.0 Technologies. AMIA 2012 - [c4]David A. Hanauer, Yang Liu, Qiaozhu Mei, Frank J. Manion, Ulysses J. Balis, Kai Zheng:
Hedging their Mets: The Use of Uncertainty Terms in Clinical Documents and its Potential Implications when Sharing the Documents with Patients. AMIA 2012 - [c3]Alla Karnovsky, Frank J. Manion, Terry E. Weymouth, V. Glenn Tarcea, Lisa Powell, Blake Roessler, Nicholas Steneck:
Development of an Informed Consent Ontology to Support Biobanking. AMIA 2012 - [c2]Dan Stuart, John Harju, Wei Shi, David A. Hanauer, Dina Aronzon, Jinlei Liu, Raveen Sharma, Frank J. Manion, Haiping Xia, Carolyn Hutter, Stephen Gruber:
tranSMART Supports a Post-GWAS Data Coordinating Center. AMIA 2012 - 2010
- [c1]Risa B. Myers, James W. Lomax III, Frank J. Manion, Nancy M. Wood, Todd R. Johnson:
Data visualization of teen birth rate data using freely available rapid prototyping tools. IHI 2010: 381-385
2000 – 2009
- 2009
- [j8]Yu Qian, Olga Tchuvatkina, Josef Spidlen, Peter Wilkinson, Maura Gasparetto, Andrew R. Jones, Frank J. Manion, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman:
FuGEFlow: data model and markup language for flow cytometry. BMC Bioinform. 10 (2009) - [j7]Hua Min, Frank J. Manion, Elizabeth Goralczyk, Yu-Ning Wong, Eric A. Ross, J. Robert Beck:
Integration of prostate cancer clinical data using an ontology. J. Biomed. Informatics 42(6): 1035-1045 (2009) - [j6]Frank J. Manion, Robert J. Robbins, William A. Weems, Rebecca S. Crowley:
Security and privacy requirements for a multi-institutional cancer research data grid: an interview-based study. BMC Medical Informatics Decis. Mak. 9: 31 (2009) - 2006
- [j5]Ghislain Bidaut, Frank J. Manion, Christophe Garcia, Michael F. Ochs:
WaveRead: Automatic measurement of relative gene expression levels from microarrays using wavelet analysis. J. Biomed. Informatics 39(4): 379-388 (2006) - 2004
- [j4]Jeffrey D. Grant, Luke A. Somers, Yue Zhang, Frank J. Manion, Ghislain Bidaut, Michael F. Ochs:
FGDP: functional genomics data pipeline for automated, multiple microarray data analyses. Bioinform. 20(2): 282-283 (2004) - 2003
- [j3]Andrew V. Kossenkov, Frank J. Manion, Eugene V. Korotkov, Thomas D. Moloshok, Michael F. Ochs:
ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database. Bioinform. 19(5): 675-676 (2003) - 2002
- [j2]Thomas D. Moloshok, R. R. Klevecz, Jeffrey D. Grant, Frank J. Manion, W. F. Speier IV, Michael F. Ochs:
Application of Bayesian Decomposition for analysing microarray data. Bioinform. 18(4): 566-575 (2002) - [j1]Jeffrey D. Grant, Roland L. Dunbrack Jr., Frank J. Manion, Michael F. Ochs:
BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster. Bioinform. 18(5): 765-766 (2002)
Coauthor Index
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last updated on 2024-08-10 00:33 CEST by the dblp team
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