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ORCIDWarren A. Kibbe
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2020 – today
- 2022
[j23]Jason A. Thomas, Randi E. Foraker
, Noa Zamstein, Jon D. Morrow, Philip R. O. Payne, Adam B. Wilcox, Melissa A. Haendel, Christopher G. Chute, Kenneth R. Gersing, Anita Walden, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Hongfang Liu, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Justin Starren, Christine Suver, Chunlei Wu, Davera Gabriel, Stephanie S. Hong, Kristin Kostka, Harold P. Lehmann, Richard A. Moffitt, Michele Morris, Matvey B. Palchuk, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Mark M. Bissell, Marshall Clark, Andrew T. Girvin, Adam M. Lee, Robert T. Miller, Kellie M. Walters, Yooree Chae, Connor Cook, Alexandra Dest, Racquel R. Dietz, Thomas Dillon, Patricia A. Francis, Rafael Fuentes, Alexis Graves, Andrew J. Neumann, Shawn T. O'Neil, Usman Sheikh, Andréa M. Volz, Elizabeth Zampino, Christopher P. Austin, Samuel Bozzette, Mariam Deacy, Nicole Garbarini, Michael G. Kurilla, Sam G. Michael, Joni L. Rutter, Meredith Temple-O'Connor, Katie Rebecca Bradwell, Amin Manna, Nabeel Qureshi, Mary Morrison Saltz, Julie A. McMurry, Carolyn T. Bramante, Jeremy Richard Harper, Wenndy Hernandez, Farrukh M. Koraishy, Federico Mariona, Saidulu Mattapally, Amit Saha, Satyanarayana Vedula, Yujuan Fu, Nisha Mathews, Ofer Mendelevitch:
Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 29(8): 1350-1365 (2022)- [j22]Gabriel A. Carrillo, Michael Cohen-Wolkowiez, Emily M. D'agostino, Keith Marsolo, Lisa M. Wruck, Laura Johnson, James Topping, Al Richmond, Giselle Corbie, Warren A. Kibbe:
Standardizing, harmonizing, and protecting data collection to broaden the impact of COVID-19 research: the rapid acceleration of diagnostics-underserved populations (RADx-UP) initiative. J. Am. Medical Informatics Assoc. 29(9): 1480-1488 (2022) - 2021
- [j21]Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Philip R. O. Payne, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Christine Suver, John Wilbanks, Adam B. Wilcox, Andrew E. Williams, Chunlei Wu, Clair Blacketer, Robert L. Bradford, James J. Cimino, Marshall Clark, Evan W. Colmenares, Patricia A. Francis, Davera Gabriel, Alexis Graves, Raju Hemadri, Stephanie S. Hong, George Hripcsak, Dazhi Jiao, Jeffrey G. Klann, Kristin Kostka, Adam M. Lee, Harold P. Lehmann, Lora Lingrey, Robert T. Miller, Michele Morris, Shawn N. Murphy, Karthik Natarajan, Matvey B. Palchuk, Usman Sheikh, Harold Solbrig, Shyam Visweswaran, Anita Walden, Kellie M. Walters, Griffin M. Weber, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Andrew T. Girvin, Amin Manna, Nabeel Qureshi, Michael G. Kurilla, Sam G. Michael, Lili M. Portilla, Joni L. Rutter, Christopher P. Austin, Ken R. Gersing:
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J. Am. Medical Informatics Assoc. 28(3): 427-443 (2021) - [j20]Brinnae Bent, Oana M. Enache, Benjamin Goldstein, Warren A. Kibbe, Jessilyn Dunn:
Reply: Matters Arising 'Investigating sources of inaccuracy in wearable optical heart rate sensors'. npj Digit. Medicine 4 (2021) - 2020
- [j19]Brinnae Bent, Benjamin Goldstein, Warren A. Kibbe, Jessilyn Dunn:
Investigating sources of inaccuracy in wearable optical heart rate sensors. npj Digit. Medicine 3 (2020)
2010 – 2019
- 2017
- [c5]Juli D. Klemm, Mervi Heiskanen, Jerry Li, David Miller, Christos Patriotis, George Redmond, Miguel Ossandon, Jacek Capala, Leah E. Mechanic, Yantian Zhang, Rao Divi, Tony Dickherber, Warren A. Kibbe:
The National Cancer Institute (NCI) Informatics Technology for Cancer Research Program (ITCR). CRI 2017 - 2015
- [j18]Tsung-Jung Wu, Lynn M. Schriml, Qingrong Chen, Maureen Colbert, Daniel J. Crichton, Richard P. Finney, Ying Hu, Warren A. Kibbe, Heather Kincaid, Daoud M. Meerzaman, Elvira Mitraka, Yang Pan, Krista Smith, Sudhir Srivastava, Sari Ward, Cheng Yan, Raja Mazumder:
Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis. Database J. Biol. Databases Curation 2015 (2015) - [j17]Warren A. Kibbe, Cesar Arze, Victor Felix, Elvira Mitraka, Evan Bolton, Gang Fu, Christopher J. Mungall, Janos X. Binder, James Malone, Drashtti Vasant, Helen E. Parkinson, Lynn M. Schriml:
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data. Nucleic Acids Res. 43(Database-Issue): 1071-1078 (2015) - 2013
- [j16]Kai Peng, Wei Xu, Jianyong Zheng, Kegui Huang, Huisong Wang, Jiansong Tong, Zhifeng Lin, Jun Liu, Wenqing Cheng, Dong Fu, Pan Du, Warren A. Kibbe, Simon M. Lin, Tian Xia:
The disease and gene annotations (DGA): an annotation resource for human disease. Nucleic Acids Res. 41(Database-Issue): 553-560 (2013) - [j15]Siddhartha Basu, Petra Fey, Yogesh Pandit, Robert J. Dodson, Warren A. Kibbe, Rex L. Chisholm:
dictyBase 2013: integrating multiple Dictyostelid species. Nucleic Acids Res. 41(Database-Issue): 676-683 (2013) - 2012
- [j14]Monique Hinchcliff, Eric M. Just, Sofia Podlusky, John Varga, Rowland W. Chang, Warren A. Kibbe:
Text data extraction for a prospective, research-focused data mart: implementation and validation. BMC Medical Informatics Decis. Mak. 12: 106 (2012) - [j13]Lynn M. Schriml, Cesar Arze, Suvarna Nadendla, Yu-Wei Wayne Chang, Mark Mazaitis, Victor Felix, Gang Feng, Warren A. Kibbe:
Disease Ontology: a backbone for disease semantic integration. Nucleic Acids Res. 40(Database-Issue): 940-946 (2012) - [c4]Andrew Gawron, Mark Wimbiscus Yoon, Laura Wimbiscus Yoon, Kristina Verkaik, Meghan Thompson, Abel N. Kho, Warren A. Kibbe, John E. Pandolfino:
GI Diaries©: A model iOS application for the collection of patient reported outcomes in clinical care. AMIA 2012 - [c3]Luke V. Rasmussen, David Were, Jeff Lunt, Steve Lee, Carl Christensen, Warren A. Kibbe, Justin Starren:
Integrating Research Recruitment into a Clinical Patient Portal. AMIA 2012 - 2011
- [j12]Griffin M. Weber, William K. Barnett, Mike Conlon, David Eichmann, Warren A. Kibbe, Holly J. Falk-Krzesinski, Michael Halaas, Layne Johnson, Eric Meeks, Donald Mitchell, Titus Schleyer, Sarah C. Stallings, Michael Warden, Maninder Kahlon:
Direct2Experts: a pilot national network to demonstrate interoperability among research-networking platforms. J. Am. Medical Informatics Assoc. 18(Supplement): 157-160 (2011) - [j11]Pascale Gaudet, Petra Fey, Siddhartha Basu, Yulia A. Bushmanova, Robert J. Dodson, Kerry A. Sheppard, Eric M. Just, Warren A. Kibbe, Rex L. Chisholm:
dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa. Nucleic Acids Res. 39(Database-Issue): 620-624 (2011) - 2010
- [j10]Pan Du, Xiao Zhang, Chiang-Ching Huang, Nadereh Jafari, Warren A. Kibbe, Lifang Hou, Simon M. Lin:
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinform. 11: 587 (2010)
2000 – 2009
- 2009
- [j9]Pan Du, Gang Feng, Jared Flatow, Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin:
From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations. Bioinform. 25(12) (2009) - [j8]Petra Fey, Pascale Gaudet, Tomaz Curk, Blaz Zupan, Eric M. Just, Siddhartha Basu, Sohel N. Merchant, Yulia A. Bushmanova, Gad Shaulsky, Warren A. Kibbe, Rex L. Chisholm:
dictyBase - a Dictyostelium bioinformatics resource update. Nucleic Acids Res. 37(Database-Issue): 515-519 (2009) - 2008
- [j7]Pan Du, Warren A. Kibbe, Simon M. Lin:
lumi: a pipeline for processing Illumina microarray. Bioinform. 24(13): 1547-1548 (2008) - [j6]Chia-Ju Lee, Dong Fu, Pan Du, Hongmei Jiang, Simon M. Lin, Warren A. Kibbe:
A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays. Int. J. Comput. Biol. Drug Des. 1(4): 396-405 (2008) - 2007
- [j5]Bradley I. Arshinoff, Garret Suen, Eric M. Just, Sohel M. Merchant, Warren A. Kibbe, Rex L. Chisholm, Roy D. Welch:
Xanthusbase: adapting wikipedia principles to a model organism database. Nucleic Acids Res. 35(Database-Issue): 422-426 (2007) - [j4]Warren A. Kibbe:
OligoCalc: an online oligonucleotide properties calculator. Nucleic Acids Res. 35(Web-Server-Issue): 43-46 (2007) - [c2]Pan Du, Simon M. Lin, Warren A. Kibbe, Haihui Wang:
Application of Wavelet Transform to the MS-based Proteomics Data Preprocessing. BIBE 2007: 680-686 - 2006
- [j3]Pan Du, Warren A. Kibbe, Simon M. Lin:
Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinform. 22(17): 2059-2065 (2006) - [j2]Rex L. Chisholm, Pascale Gaudet, Eric M. Just, Karen E. Pilcher, Petra Fey, Sohel N. Merchant, Warren A. Kibbe:
dictyBase, the model organism database for Dictyostelium discoideum. Nucleic Acids Res. 34(Database-Issue): 423-427 (2006) - 2004
- [j1]Lisa Kreppel, Petra Fey, Pascale Gaudet, Eric M. Just, Warren A. Kibbe, Rex L. Chisholm, Alan R. Kimmel:
dictyBase: a new Dictyostelium discoideum genome database. Nucleic Acids Res. 32(Database-Issue): 332-333 (2004) - 2001
- [c1]K. Gwaltney, Christopher G. Chute, Douglas Hageman, Warren A. Kibbe, Kathleen A. McCormick, Dianne M. Reeves, Lawrence W. Wright:
An assessment of cancer clinical trials vocabulary and IT infrastructure in the U.S. AMIA 2001
Coauthor Index
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