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2020 – today
- 2021
[j15]Mathurin Dorel
, Bertram Klinger, Tommaso Mari, Joern Toedling, Eric Blanc, Clemens Messerschmidt, Michal Nadler-Holly, Matthias Ziehm, Anja Sieber, Falk Hertwig, Dieter Beule, Angelika Eggert, Johannes H. Schulte, Matthias Selbach, Nils Blüthgen:
Neuroblastoma signalling models unveil combination therapies targeting feedback-mediated resistance. PLoS Comput. Biol. 17(11) (2021)- 2020
- [j14]Torsten Gross, Nils Blüthgen:
Identifiability and experimental design in perturbation studies. Bioinform. 36(Supplement-1): i482-i489 (2020) - [j13]Mattias Rydenfelt, Bertram Klinger, Martina Klünemann, Nils Blüthgen:
SPEED2: inferring upstream pathway activity from differential gene expression. Nucleic Acids Res. 48(Webserver-Issue): W307-W312 (2020)
2010 – 2019
- 2019
- [j12]Torsten Gross, Matthew Wongchenko, Yibing Yan, Nils Blüthgen:
Robust network inference using response logic. Bioinform. 35(14): i634-i642 (2019) - 2018
- [j11]Evert Bosdriesz, Anirudh Prahallad, Bertram Klinger, Anja Sieber, Astrid Bosma, René Bernards, Nils Blüthgen, Lodewyk F. A. Wessels:
Comparative Network Reconstruction using mixed integer programming. Bioinform. 34(17): i997-i1004 (2018) - [j10]Mathurin Dorel, Bertram Klinger, Torsten Gross, Anja Sieber, Anirudh Prahallad, Evert Bosdriesz, Lodewyk F. A. Wessels, Nils Blüthgen:
Modelling signalling networks from perturbation data. Bioinform. 34(23): 4079-4086 (2018) - 2017
- [i1]Torsten Gross, Nils Blüthgen:
Sorting sums of binary decision summands. CoRR abs/1704.05795 (2017) - 2015
- [j9]Philippe Thomas, Pawel Durek, Illés Solt, Bertram Klinger, Franziska Witzel, Pascal Schulthess, Yvonne Mayer, Domonkos Tikk, Nils Blüthgen, Ulf Leser:
Computer-assisted curation of a human regulatory core network from the biological literature. Bioinform. 31(8): 1258-1266 (2015) - [j8]Franziska Witzel, Raphaela Fritsche-Guenther, Nadine Lehmann, Anja Sieber, Nils Blüthgen:
Analysis of impedance-based cellular growth assays. Bioinform. 31(16): 2705-2712 (2015) - 2010
- [j7]Jignesh R. Parikh, Bertram Klinger, Yu Xia, Jarrod A. Marto, Nils Blüthgen:
Discovering causal signaling pathways through gene-expression patterns. Nucleic Acids Res. 38(Web-Server-Issue): 109-117 (2010) - [j6]Szymon M. Kielbasa, Nils Blüthgen, Michael Fähling, Ralf Mrowka:
Targetfinder.org: a resource for systematic discovery of transcription factor target genes. Nucleic Acids Res. 38(Web-Server-Issue): 233-238 (2010) - [j5]Szymon M. Kielbasa, Holger Klein, Helge G. Roider, Martin Vingron, Nils Blüthgen:
TransFind - predicting transcriptional regulators for gene sets. Nucleic Acids Res. 38(Web-Server-Issue): 275-280 (2010)
2000 – 2009
- 2009
- [j4]Frank J. Bruggeman, Nils Blüthgen, Hans V. Westerhoff:
Noise Management by Molecular Networks. PLoS Comput. Biol. 5(9) (2009) - 2006
- [j3]Stefan Legewie, Nils Blüthgen, Hanspeter Herzel:
Mathematical Modeling Identifies Inhibitors of Apoptosis as Mediators of Positive Feedback and Bistability. PLoS Comput. Biol. 2(9) (2006) - 2005
- [j2]Stefan Legewie, Nils Blüthgen, Reinhold Schäfer, Hanspeter Herzel:
Ultrasensitization: Switch-Like Regulation of Cellular Signaling by Transcriptional Induction. PLoS Comput. Biol. 1(5) (2005) - 2004
- [j1]Nils Blüthgen, Szymon M. Kielbasa, Branka Cajavec, Hanspeter Herzel:
HOMGL - comparing genelists across species and with different accession numbers. Bioinform. 20(1): 125-126 (2004) - [c1]Szymon M. Kielbasa, Nils Blüthgen, Hanspeter Herzel:
Genome-wide Analysis of Functions Regulated by Sets of Transcription Factors. German Conference on Bioinformatics 2004: 105-113
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