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ORCIDJakob Hull Havgaard
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2020 – today
- 2020
[j9]Daniel Sundfeld
, George Teodoro, Jakob Hull Havgaard, Jan Gorodkin, Alba C. M. A. Melo:
Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities. Concurr. Comput. Pract. Exp. 32(10) (2020)
2010 – 2019
- 2017
- [j8]Milad Miladi, Alexander Junge, Fabrizio Costa, Stefan E. Seemann, Jakob Hull Havgaard, Jan Gorodkin, Rolf Backofen:
RNAscClust: clustering RNA sequences using structure conservation and graph based motifs. Bioinform. 33(14): 2089-2096 (2017) - [c2]Daniel Sundfeld, Jakob Hull Havgaard, Jan Gorodkin, Alba Cristina Magalhaes Alves de Melo:
CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment. PDP 2017: 295-302 - 2016
- [j7]Daniel Sundfeld, Jakob Hull Havgaard, Alba Cristina Magalhaes Alves de Melo, Jan Gorodkin:
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment. Bioinform. 32(8): 1238-1240 (2016)
2000 – 2009
- 2009
- [j6]Bogumil Kaczkowski, Elfar Torarinsson, Kristin Reiche, Jakob Hull Havgaard, Peter F. Stadler, Jan Gorodkin:
Structural profiles of human miRNA families from pairwise clustering. Bioinform. 25(3): 291-294 (2009) - 2007
- [j5]Elfar Torarinsson, Jakob Hull Havgaard, Jan Gorodkin:
Multiple structural alignment and clustering of RNA sequences. Bioinform. 23(8): 926-932 (2007) - [j4]Jakob Hull Havgaard, Elfar Torarinsson, Jan Gorodkin:
Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix. PLoS Comput. Biol. 3(10) (2007) - [c1]Frank Panitz, Henrik Stengaard, Henrik Hornshøj, Jan Gorodkin, Jakob Hedegaard, Susanna Cirera, Bo Thomsen, Lone B. Madsen, Anette Høj, Rikke K. Vingborg, Bujie Zahn, Xuegang Wang, Xuefei Wang, Rasmus Wernersson, Claus B. Jørgensen, Karsten Scheibye-Knudsen, Troels Arvin, Steen Lumholdt, Milena Sawera, Trine Green, Bente J. Nielsen, Jakob Hull Havgaard, Søren Brunak, Merete Fredholm, Christian Bendixen:
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation. ISMB/ECCB (Supplement of Bioinformatics) 2007: 387-391 - 2006
- [j3]Jan Gorodkin, Jakob Hull Havgaard, Milena Ensterö, Milena Sawera, Peter Jensen, M. Öhman, Merete Fredholm:
MicroRNA sequence motifs reveal asymmetry between the stem arms. Comput. Biol. Chem. 30(4): 249-254 (2006) - 2005
- [j2]Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin:
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. Bioinform. 21(9): 1815-1824 (2005) - [j1]Jakob Hull Havgaard, Rune B. Lyngsø, Jan Gorodkin:
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search. Nucleic Acids Res. 33(Web-Server-Issue): 650-653 (2005)
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