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2020 – today
- 2024
[j19]Yu-Ching Hsu, Yu-Chiao Chiu, Tzu-Pin Lu, Tzu-Hung Hsiao, Yidong Chen:
Predicting drug response through tumor deconvolution by cancer cell lines. Patterns 5(4): 100949 (2024)- 2023
- [j18]Amrita Chattopadhyay, Chien-Yueh Lee, Ying-Cheng Shen, Kuan-Chen Lu, Tzu-Hung Hsiao, Ching-Heng Lin, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu
, Eric Y. Chuang:
Multi-ethnic Imputation System (MI-System): A genotype imputation server for high-dimensional data. J. Biomed. Informatics 143: 104423 (2023) - 2022
- [j17]Amrita Chattopadhyay, Ching-Yu Shih, Yu-Chen Hsu, Jyh-Ming Jimmy Juang, Eric Y. Chuang, Tzu-Pin Lu:
CLIN_SKAT: an R package to conduct association analysis using functionally relevant variants. BMC Bioinform. 23(1): 441 (2022) - [j16]Yi-Wen Hsiao, Lin Wang, Tzu-Pin Lu:
ceRNAR: An R package for identification and analysis of ceRNA-miRNA triplets. PLoS Comput. Biol. 18(9): 1010497 (2022) - 2021
- [j15]Nam Nhut Phan, Amrita Chattopadhyay, Tsui-Ting Lee, Hsiang-I Yin, Tzu-Pin Lu, Liang-Chuan Lai, Hsiao-Lin Hwa, Mong-Hsun Tsai, Eric Y. Chuang:
High-performance deep learning pipeline predicts individuals in mixtures of DNA using sequencing data. Briefings Bioinform. 22(6) (2021) - [j14]Amrita Chattopadhyay, Zi Han Teoh, Chi-Yun Wu, Jyh-Ming Jimmy Juang, Liang-Chuan Lai, Mong-Hsun Tsai, Chia-Hsin Wu, Tzu-Pin Lu, Eric Y. Chuang:
CNVIntegrate: the first multi-ethnic database for identifying copy number variations associated with cancer. Database J. Biol. Databases Curation 2021 (2021) - [j13]Sheng-Mao Chang, Meng Yang, Wenbin Lu, Yu-Jyun Huang, Yueyang Huang, Hung Hung, Jeffrey C. Miecznikowski, Tzu-Pin Lu, Jung-Ying Tzeng:
Gene-set integrative analysis of multi-omics data using tensor-based association test. Bioinform. 37(16): 2259-2265 (2021) - [j12]Ching-Yu Shih, Amrita Chattopadhyay, Chien-Hui Wu, Yu-Wen Tien, Tzu-Pin Lu:
Transcript annotation tool (TransAT): an R package for retrieving annotations for transcript-specific genetic variants. BMC Bioinform. 22(1): 350 (2021) - [j11]Kuan-Hao Chao, Yi-Wen Hsiao, Yi-Fang Lee, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
RNASeqR: An R Package for Automated Two-Group RNA-Seq Analysis Workflow. IEEE ACM Trans. Comput. Biol. Bioinform. 18(5): 2023-2031 (2021) - 2020
- [j10]Amanda Brucker, Wenbin Lu, Rachel Marceau West, Qi-You Yu, Chuhsing Kate Hsiao, Tzu-Hung Hsiao, Ching-Heng Lin, Patrik K. E. Magnusson, Patrick F. Sullivan, Jin P. Szatkiewicz, Tzu-Pin Lu, Jung-Ying Tzeng:
Association test using Copy Number Profile Curves (CONCUR) enhances power in rare copy number variant analysis. PLoS Comput. Biol. 16(5) (2020) - [c3]Kuan-Hung Yeh, Ching-Heng Lin, Tzu-Hung Hsiao, Tzu-Pin Lu:
Genome-Wide Association Study (GWAS) on Metabolic Syndrome in Subjects with Abdominal Obesity in a Taiwanese Population. BIBM 2020: 1403-1407
2010 – 2019
- 2019
- [j9]Chien-Yueh Lee, Amrita Chattopadhyay, Li-Mei Chiang, Jyh-Ming Jimmy Juang, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
VariED: the first integrated database of gene annotation and expression profiles for variants related to human diseases. Database J. Biol. Databases Curation 2019: baz075 (2019) - [j8]Ti-Tai Wang, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
anamiR: integrated analysis of MicroRNA and gene expression profiling. BMC Bioinform. 20(1): 239:1-239:7 (2019) - 2018
- [j7]Yi-Fang Lee, Chien-Yueh Lee, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
CellExpress: a comprehensive microarray-based cancer cell line and clinical sample gene expression analysis online system. Database J. Biol. Databases Curation 2018: bax101 (2018) - [j6]Shu-Ju Lin, Tzu-Pin Lu, Qi-You Yu, Chuhsing Kate Hsiao:
Probabilistic prioritization of candidate pathway association with pathway score. BMC Bioinform. 19(1): 391:1-391:10 (2018) - 2017
- [j5]Yi-Pin Lai, Liang-Bo Wang, Wei-An Wang, Liang-Chuan Lai, Mong-Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang:
iGC - an integrated analysis package of gene expression and copy number alteration. BMC Bioinform. 18(1): 35:1-35:9 (2017) - [j4]Yu-Chiao Chiu, Li-Ju Wang, Tzu-Pin Lu, Tzu-Hung Hsiao, Eric Y. Chuang, Yidong Chen:
Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival. BMC Bioinform. 18(1): 132:1-132:11 (2017) - 2016
- [j3]Nysia I. George, Tzu-Pin Lu, Ching-Wei Chang:
Cost-sensitive performance metric for comparing multiple ordinal classifiers. Artif. Intell. Res. 5(1): 135-143 (2016) - 2013
- [j2]Tzu-Pin Lu, Eric Y. Chuang, James J. Chen:
Identification of reproducible gene expression signatures in lung adenocarcinoma. BMC Bioinform. 14: 371 (2013) - [j1]Pei-Chun Chen, Tzu-Pin Lu, Jung-Chih Chang, Liang-Chuan Lai, Mong-Hsun Tsai, Chuhsing Kate Hsiao, Eric Y. Chuang:
Concurrent analysis of copy number variation and gene expression: application in paired non-smoking female lung cancer patients. Int. J. Data Min. Bioinform. 8(1): 92-104 (2013) - 2010
- [c2]Tzu-Pin Lu, Liang-Chuan Lai, Chuhsing Kate Hsiao, Pei-Chun Chen, Mong-Hsun Tsai, Eric Y. Chuang:
Concurrent analysis of copy number variations and expression profiles to identify genes associated with tumorigenesis and survival outcome in lung adenocarcinoma. BIBM 2010: 284-289 - [c1]Jung-Chih Chang, Tzu-Pin Lu, Eric Y. Chuang, Liang-Chuan Lai, Mong-Hsun Tsai, Chuhsing Kate Hsiao, Pei-Chun Chen:
Concurrent analysis of copy number variation and gene expression: Application in paired non-smoking female lung cancer patients. BIBM 2010: 599-602
Coauthor Index
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