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2020 – today
- 2023
[c8]Peter X. Geng
, Jiaheng Hou, Huaiqiu Zhu:
Computer Simulation of Gene Knockout in Bacteria Accelerated by AI. CISP-BMEI 2023: 1-5- 2022
- [j22]Jie Tan, Zhencheng Fang, Shufang Wu, Qian Guo, Xiaoqing Jiang, Huaiqiu Zhu:
HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes. Bioinform. 38(2): 543-545 (2022) - 2021
- [j21]Congmin Xu, Man Zhou, Zhongjie Xie, Mo Li, Xi Zhu, Huaiqiu Zhu:
LightCUD: a program for diagnosing IBD based on human gut microbiome data. BioData Min. 14(1): 2 (2021) - [j20]Cheng Yang, Man Zhou, Haoling Xie, Huaiqiu Zhu:
LncADeep performance on full-length transcripts. Nat. Mach. Intell. 3(3): 197-198 (2021) - [c7]Xiaoqing Jiang, Congmin Xu, Qian Guo, Huaiqiu Zhu:
AI-aided Data Mining in Gut Microbiome: The Road to Precision Medicine. CISP-BMEI 2021: 1-5 - 2020
- [j19]Zhencheng Fang, Jie Tan, Shufang Wu, Mo Li, Chunhui Wang, Yongchu Liu, Huaiqiu Zhu:
PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning. Bioinform. 36(10): 3239-3241 (2020) - [c6]Luotong Wang, Li Qu, Longshu Yang, Yiying Wang, Huaiqiu Zhu:
An Error Correction Method of Nanopore Sequencing Data Using Deep Learning. CISP-BMEI 2020: 23-28
2010 – 2019
- 2019
- [j18]Xiaoqing Jiang, Xin Li, Longshu Yang, Chunhong Liu, Qi Wang, Weilai Chi, Huaiqiu Zhu:
How Microbes Shape Their Communities? A Microbial Community Model Based on Functional Genes. Genom. Proteom. Bioinform. 17(1): 91-105 (2019) - 2018
- [j17]Cheng Yang, Longshu Yang, Man Zhou, Haoling Xie, Chengjiu Zhang, May D. Wang, Huaiqiu Zhu:
LncADeep: an ab initio lncRNA identification and functional annotation tool based on deep learning. Bioinform. 34(22): 3825-3834 (2018) - [c5]Chuan He, Huaiqiu Zhu:
A Novel Compression Algorithm for High-Throughput DNA Sequence Based on Huffman Coding Method. CISP-BMEI 2018: 1-5 - [c4]Li Qu, Huaiqiu Zhu, May D. Wang:
Micro-Inversions In Human Cancer Genomes. EMBC 2018: 1323-1326 - 2017
- [j16]Peng Zhai, Longshu Yang, Xiao Guo, Zhe Wang, Jiangtao Guo, Xiaoqi Wang, Huaiqiu Zhu:
MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics. BMC Bioinform. 18(1): 434:1-434:16 (2017) - 2016
- [j15]Feifei He, Yang Li, Yu-Hang Tang, Jian Ma, Huaiqiu Zhu:
Identifying micro-inversions using high-throughput sequencing reads. BMC Genom. 17(S-1): 4 (2016) - [c3]Xiaopeng Song, Xiao Hu, Shuqin Zhou, Weiguo Liu, Yijun Liu, Huaiqiu Zhu, Jia-Hong Gao:
Examining the neural correlates of depressive and motor symptoms in Parkinson's disease using Frequency Component Analysis (FCA). Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2016: 97880M - 2015
- [j14]Binbin Lai, Fumeng Wang, Xiaoqi Wang, Liping Duan, Huaiqiu Zhu:
InteMAP: Integrated metagenomic assembly pipeline for NGS short reads. BMC Bioinform. 16: 244:1-244:14 (2015) - 2013
- [j13]Yongchu Liu, Jiangtao Guo, Gang-Qing Hu, Huaiqiu Zhu:
Gene prediction in metagenomic fragments based on the SVM algorithm. BMC Bioinform. 14(S-5): S12 (2013) - 2012
- [j12]Binbin Lai, Ruogu Ding, Yang Li, Liping Duan, Huaiqiu Zhu:
A de novo metagenomic assembly program for shotgun DNA reads. Bioinform. 28(11): 1455-1462 (2012) - 2011
- [j11]Changqing Zhang, Jin Wang, Xu Hua, Jinggui Fang, Huaiqiu Zhu, Xiang Gao:
A mutation degree model for the identification of transcriptional regulatory elements. BMC Bioinform. 12: 262 (2011) - [c2]Binbin Lai, Ruogu Ding, Huaiqiu Zhu:
A de novo assembly method for metagenomic DNA reads with mate pairs. BMEI 2011: 1562-1566 - [c1]Yongchu Liu, Jiangtao Guo, Huaiqiu Zhu:
Gene prediction in metagenomic fragments based on the SVM algorithm. BMEI 2011: 1738-1742
2000 – 2009
- 2009
- [j10]Gang-Qing Hu, Xiaobin Zheng, Huaiqiu Zhu, Zhen-Su She:
Prediction of translation initiation site for microbial genomes with TriTISA. Bioinform. 25(1): 123-125 (2009) - [j9]Gang-Qing Hu, Jiangtao Guo, Yongchu Liu, Huaiqiu Zhu:
MetaTISA: Metagenomic Translation Initiation Site Annotator for improving gene start prediction. Bioinform. 25(14): 1843-1845 (2009) - 2008
- [j8]Gang-Qing Hu, Xiaobin Zheng, Lining Ju, Huaiqiu Zhu, Zhen-Su She:
Computational evaluation of TIS annotation for prokaryotic genomes. BMC Bioinform. 9 (2008) - [j7]Xin-Qiu Yao, Huaiqiu Zhu, Zhen-Su She:
A dynamic Bayesian network approach to protein secondary structure prediction. BMC Bioinform. 9 (2008) - [j6]Gang-Qing Hu, Xiaobin Zheng, Yi-Fan Yang, Philippe Ortet, Zhen-Su She, Huaiqiu Zhu:
ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes. Nucleic Acids Res. 36(Database-Issue): 114-119 (2008) - 2007
- [j5]Zhu Yang, John D. O'Brien, Xiaobin Zheng, Huaiqiu Zhu, Zhen-Su She:
Tree and rate estimation by local evaluation of heterochronous nucleotide data. Bioinform. 23(2): 169-176 (2007) - [j4]Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang, Zhen-Su She:
MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes. BMC Bioinform. 8 (2007) - 2004
- [j3]Wen Xue, Jin Wang, Zhirong Shen, Huaiqiu Zhu:
Enrichment of transcriptional regulatory sites in non-coding genomic region. Bioinform. 20(4): 569-575 (2004) - [j2]Huaiqiu Zhu, Gang-Qing Hu, Zheng-Qing Ouyang, Jin Wang, Zhen-Su She:
Accuracy improvement for identifying translation initiation sites in microbial genomes. Bioinform. 20(18): 3308-3317 (2004) - [j1]Zheng-Qing Ouyang, Huaiqiu Zhu, Jin Wang, Zhen-Su She:
Multivariate Entropy Distance Method for Prokaryotic Gene Identification. J. Bioinform. Comput. Biol. 2(2): 353-374 (2004)
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