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2020 – today
- 2023
[j43]Chi-Shin Wu, Chien-Hung Chen, Chu-Hsien Su, Yi-Ling Chien, Hong-Jie Dai, Hsin-Hsi Chen:
Augmenting DSM-5 diagnostic criteria with self-attention-based BiLSTM models for psychiatric diagnosis. Artif. Intell. Medicine 136: 102488 (2023)- [j42]Davy Weissenbacher
, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A. Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez:
Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation 2023 (2023) - 2022
- [j41]Chen-Kai Wang, Feng-Duo Wang, You-Qian Lee, Pei-Tsz Chen, Bo-Hong Wang, Chu-Hsien Su, Joseph Chin-Chi Kuo, Chi-Shin Wu, Yi-Ling Chien, Hong-Jie Dai, Vincent S. Tseng, Wen-Lian Hsu:
Principle-Based Approach for the De-Identification of Code-Mixed Electronic Health Records. IEEE Access 10: 22875-22885 (2022) - 2021
- [j40]Hong-Jie Dai, Yi-Hsin Connie Yang, Ti-Hao Wang, Yan-Jie Lin, Pin-Jou Lu, Chung-Yang Wu, Yu-Cheng Chang, You-Qian Lee, You-Chen Zhang, Yuan-Chi Hsu, Han-Hsiang Wu, Cheng-Rong Ke, Chih-Jen Huang, Yu-Tsang Wang, Sheau-Fang Yang, Kuan-Chung Hsiao, Ko-Jiunn Liu, Li-Tzong Chen, I-Shou Chang, K. S. Clifford Chao, Tsang-Wu Liu:
Cancer Registry Coding via Hybrid Neural Symbolic Systems in the Cross-Hospital Setting. IEEE Access 9: 112081-112096 (2021) - [c31]You-Qian Lee, Bo-Hong Wang, Chu-Hsien Su, Pei-Tsz Chen, Wu-Qing Lin, Chi-Shin Wu, Hong-Jie Dai:
Protected Health Information Recognition of Unstructured Code-Mixed Electronic Health Records in Taiwan. MedInfo 2021: 627-631 - 2020
- [j39]Hong-Jie Dai, Chu-Hsien Su, Chi-Shin Wu:
Adverse drug event and medication extraction in electronic health records via a cascading architecture with different sequence labeling models and word embeddings. J. Am. Medical Informatics Assoc. 27(1): 47-55 (2020) - [j38]Hong-Jie Dai, Feng-Duo Wang, Chih-Wei Chen, Chu-Hsien Su, Chi-Shin Wu, Jitendra Jonnagaddala:
Cohort selection for clinical trials using multiple instance learning. J. Biomed. Informatics 107: 103438 (2020) - [c30]Yan-Jie Lin, Hong-Jie Dai, You-Chen Zhang, Chung-Yang Wu, Yu-Cheng Chang, Pin-Jou Lu, Chih-Jen Huang, Yu-Tsang Wang, Hui-Min Hsieh, Kun-San Chao, Tsang-Wu Liu, I-Shou Chang, Yi-Hsin Connie Yang, Ti-Hao Wang, Ko-Jiunn Liu, Li-Tzong Chen, Sheau-Fang Yang:
Cancer Registry Information Extraction via Transfer Learning. ClinicalNLP@EMNLP 2020: 201-208 - [c29]Chen-Kai Wang, Hong-Jie Dai, You-Chen Zhang, Bo-Chun Xu, Bo-Hong Wang, You-Ning Xu, Po-Hao Chen, Chung-Hong Lee:
ISLab System for SMM4H Shared Task 2020. SMM4H@COLING 2020: 42-45
2010 – 2019
- 2019
- [j37]Rezarta Islamaj Dogan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C. Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C. Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altinel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang, Hong-Jie Dai, Tung Tran, Ramakanth Kavuluru, Ling Luo, Albert Steppi, Jinfeng Zhang, Jinchan Qu, Zhiyong Lu:
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. Database J. Biol. Databases Curation 2019: bay147 (2019) - [j36]Hong-Jie Dai, Chen-Kai Wang, Nai-Wen Chang, Ming-Siang Huang, Jitendra Jonnagaddala, Feng-Duo Wang, Wen-Lian Hsu:
Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature. Database J. Biol. Databases Curation 2019: baz030 (2019) - [j35]Hong-Jie Dai, Chen-Kai Wang:
Classifying adverse drug reactions from imbalanced twitter data. Int. J. Medical Informatics 129: 122-132 (2019) - [j34]Hong-Jie Dai:
Family member information extraction via neural sequence labeling models with different tag schemes. BMC Medical Informatics Decis. Mak. 19-S(10): 257 (2019) - [c28]You-Chen Zhang, Chung-Hong Lee, Tyng-Yeu Liang, Wei-Che Chung, Kuei-Han Li, Cheng-Chieh Huang, Hong-Jie Dai, Chi-Shin Wu, Chian-Jue Kuo, Chu-Hsien Su, Horng-Chang Yang:
Depressive Symptoms and Functional Impairments Extraction From Electronic Health Records. ICMLC 2019: 1-6 - [c27]Chen-Kai Wang, Hong-Jie Dai, Bo-Hung Wang:
BIGODM System in the Social Media Mining for Health Applications Shared Task 2019. SMM4H@ACL 2019: 117-119 - [r1]Onkar Singh, Nai-Wen Chang, Hong-Jie Dai, Jitendra Jonnagaddala:
Translational Bioinformatics Databases. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 1058-1062 - 2018
- [j33]Hong-Jie Dai, Onkar Singh:
SPRENO: a BioC module for identifying organism terms in figure captions. Database J. Biol. Databases Curation 2018: bay048 (2018) - [c26]Neha Warikoo, Yung-Chun Chang, Hong-Jie Dai, Wen-Lian Hsu:
An Ensemble Neural Network Model for Benefiting Pregnancy Health Stats from Mining Social Media. AIRS 2018: 3-15 - [c25]Chen-Kai Wang, Hong-Jie Dai, Feng-Duo Wang, Emily Chia-Yu Su:
Adverse Drug Reaction Post Classification with Imbalanced Classification Techniques. TAAI 2018: 5-9 - 2017
- [j32]Nai-Wen Chang, Hong-Jie Dai, Yung-Yu Shih, Chi-Yang Wu, Mira Anne C. dela Rosa, Rofeamor P. Obena, Yu-Ju Chen, Wen-Lian Hsu, Yen-Jen Oyang:
Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy. Database J. Biol. Databases Curation 2017: bax082 (2017) - [c24]Chen-Kai Wang, Nai-Wun Chang, Emily Chia-Yu Su, Hong-Jie Dai:
NTTMU System in the 2nd Social Media Mining for Health Applications Shared Task. SMM4H@AMIA 2017: 83-86 - [c23]Yi-Jie Huang, Chu-Hsien Su, Yi-Chun Chang, Tseng-Hsin Ting, Tzu-Yuan Fu, Rou-Min Wang, Hong-Jie Dai, Yung-Chun Chang, Jitendra Jonnagaddala, Wen-Lian Hsu:
Incorporating Dependency Trees Improve Identification of Pregnant Women on Social Media Platforms. DDDSM@IJCNLP 2017: 26-32 - [c22]Chen-Kai Wang, Onkar Singh, Zhao-Li Tang, Hong-Jie Dai:
Using a Recurrent Neural Network Model for Classification of Tweets Conveyed Influenza-related Information. DDDSM@IJCNLP 2017: 33-38 - [c21]Josan Wei-San Lin, Hong-Jie Dai, Joni Yu-Hsuan Shao:
Principle Base Approach for Classifying Tweets with Flu-related Information in NTCIR-13 MedWeb Task. NTCIR 2017 - [e1]Jitendra Jonnagaddala, Hong-Jie Dai, Yung-Chun Chang:
Proceedings of the International Workshop on Digital Disease Detection using Social Media, DDDSM@IJCNLP 2017, Taipei, Taiwan, November 27, 2017. Association for Computational Linguistics 2017, ISBN 978-1-948087-07-0 [contents] - 2016
- [j31]Hong-Jie Dai, Onkar Singh, Jitendra Jonnagaddala, Emily Chia-Yu Su:
NTTMUNSW BioC modules for recognizing and normalizing species and gene/protein mentions. Database J. Biol. Databases Curation 2016 (2016) - [j30]Hong-Jie Dai, Chu-Hsien Su, Po-Ting Lai, Ming-Siang Huang, Jitendra Jonnagaddala, Toni Rose Jue, Shruti Rao, Hui-Jou Chou, Marija Milacic, Onkar Singh, Syed Abdul Shabbir, Wen-Lian Hsu:
MET network in PubMed: a text-mined network visualization and curation system. Database J. Biol. Databases Curation 2016 (2016) - [j29]Jitendra Jonnagaddala, Toni Rose Jue, Nai-Wen Chang, Hong-Jie Dai:
Improving the dictionary lookup approach for disease normalization using enhanced dictionary and query expansion. Database J. Biol. Databases Curation 2016 (2016) - [j28]Sun Kim, Rezarta Islamaj Dogan, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su, Chun-Han Chu, Chien Chin Chen, Wen-Lian Hsu, Yifan Peng, Cecilia N. Arighi, Cathy H. Wu, K. Vijay-Shanker, Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür, Soo-Yong Shin, Dongseop Kwon, Kara Dolinski, Mike Tyers, W. John Wilbur, Donald C. Comeau:
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database J. Biol. Databases Curation 2016 (2016) - [j27]Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi:
Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016) - [j26]Hong-Jie Dai, Musa Touray, Jitendra Jonnagaddala, Syed Abdul Shabbir:
Feature Engineering for Recognizing Adverse Drug Reactions from Twitter Posts. Inf. 7(2): 27 (2016) - [c20]Nai-Wen Chang, Hong-Jie Dai, Yu-Lun Hsieh, Wen-Lian Hsu:
Statistical Principle-Based Approach for Detecting miRNA-Target Gene Interaction Articles. BIBE 2016: 79-86 - [c19]Chen-Kai Wang, Hong-Jie Dai, Chih-Wei Chen, Jitendra Jonnagaddala, Nai-Wen Chang:
Combining Multiple Classifiers Using Global Ranking for ReachOut.com Post Triage. CLPsych@HLT-NAACL 2016: 176-179 - 2015
- [j25]Nai-Wen Chang, Hong-Jie Dai, Jitendra Jonnagaddala, Chih-Wei Chen, Richard Tzong-Han Tsai, Wen-Lian Hsu:
A context-aware approach for progression tracking of medical concepts in electronic medical records. J. Biomed. Informatics 58: S150-S157 (2015) - [j24]Jitendra Jonnagaddala, Siaw-Teng Liaw, Pradeep Ray, Manish Kumar, Nai-Wen Chang, Hong-Jie Dai:
Coronary artery disease risk assessment from unstructured electronic health records using text mining. J. Biomed. Informatics 58: S203-S210 (2015) - [j23]Hong-Jie Dai, Po-Ting Lai, Yung-Chun Chang, Richard Tzong-Han Tsai:
Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization. J. Cheminformatics 7(S-1): S14 (2015) - [j22]Martin Krallinger, Obdulia Rabal, Florian Leitner, Miguel Vazquez, David Salgado, Zhiyong Lu, Robert Leaman, Yanan Lu, Donghong Ji, Daniel M. Lowe, Roger A. Sayle, Riza Theresa Batista-Navarro, Rafal Rak, Torsten Huber, Tim Rocktäschel, Sérgio Matos, David Campos, Buzhou Tang, Hua Xu, Tsendsuren Munkhdalai, Keun Ho Ryu, S. V. Ramanan, P. Senthil Nathan, Slavko Zitnik, Marko Bajec, Lutz Weber, Matthias Irmer, Saber A. Akhondi, Jan A. Kors, Shuo Xu, Xin An, Utpal Kumar Sikdar, Asif Ekbal, Masaharu Yoshioka, Thaer M. Dieb, Miji Choi, Karin Verspoor, Madian Khabsa, C. Lee Giles, Hongfang Liu, Ravikumar Komandur Elayavilli, Andre Lamurias, Francisco M. Couto, Hong-Jie Dai, Richard Tzong-Han Tsai, Caglar Ata, Tolga Can, Anabel Usie, Rui Alves, Isabel Segura-Bedmar, Paloma Martínez, Julen Oyarzabal, Alfonso Valencia:
The CHEMDNER corpus of chemicals and drugs and its annotation principles. J. Cheminformatics 7(S-1): S2 (2015) - [c18]Jitendra Jonnagaddala, Hong-Jie Dai, Pradeep Ray, Siaw-Teng Liaw:
A preliminary study on automatic identification of patient smoking status in unstructured electronic health records. BioNLP@IJCNLP 2015: 147-151 - [c17]Jitendra Jonnagaddala, Siaw-Teng Liaw, Pradeep Kumar Ray, Manish Kumar, Hong-Jie Dai:
TMUNSW: Identification of Disorders and Normalization to SNOMED-CT Terminology in Unstructured Clinical Notes. SemEval@NAACL-HLT 2015: 394-398 - [c16]Josan Wei-San Lin, Hong-Jie Dai, Jitendra Jonnagaddala, Nai-Wun Chang, Toni Rose Jue, Usman Iqbal, Joni Yu-Hsuan Shao, I-Jen Chiang, Yu-Chuan Li:
Utilizing different word representation methods for twitter data in adverse drug reactions extraction. TAAI 2015: 260-265 - 2014
- [j21]Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur:
BioC interoperability track overview. Database J. Biol. Databases Curation 2014 (2014) - [j20]Hong-Jie Dai, Johnny Chi-Yang Wu, Josan Wei-San Lin, Aaron James F. Reyes, Mira Anne C. dela Rosa, Syed Abdul Shabbir, Richard Tzong-Han Tsai, Wen-Lian Hsu:
LiverCancerMarkerRIF: a liver cancer biomarker interactive curation system combining text mining and expert annotations. Database J. Biol. Databases Curation 2014 (2014) - [j19]Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N. Arighi, Peter McQuilton, G. Thomas Hayman, Susan Tweedie, Mary L. Schaeffer, Stanley J. F. Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-Jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu, Yanpeng Li, Hong Yu, Ehsan Emadzadeh, Graciela Gonzalez, Jian-Ming Chen, Hong-Jie Dai, Zhiyong Lu:
Overview of the gene ontology task at BioCreative IV. Database J. Biol. Databases Curation 2014 (2014) - [j18]Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Joint Learning of Entity Linking Constraints Using a Markov-Logic Network. Int. J. Comput. Linguistics Chin. Lang. Process. 19(1) (2014) - [c15]Jitendra Jonnagaddala, Manish Kumar, Hong-Jie Dai, Enny Rachmani, Chien-Yeh Hsu:
TMUNSW: Disorder Concept Recognition and Normalization in Clinical Notes for SemEval-2014 Task 7. SemEval@COLING 2014: 663-667 - [c14]Chih-Wei Chen, Nai-Wen Chang, Yung-Chun Chang, Hong-Jie Dai:
Section Heading Recognition in Electronic Health Records Using Conditional Random Fields. TAAI 2014: 47-55 - [c13]Jitendra Jonnagaddala, Siaw-Teng Liaw, Pradeep Ray, Manish Kumar, Hong-Jie Dai:
HTNSystem: Hypertension Information Extraction System for Unstructured Clinical Notes. TAAI 2014: 219-227 - 2013
- [j17]Hong-Jie Dai, Chi-Yang Wu, Richard Tzong-Han Tsai, Wen-Harn Pan, Wen-Lian Hsu:
T-HOD: a literature-based candidate gene database for hypertension, obesity and diabetes. Database J. Biol. Databases Curation 2013 (2013) - [j16]Yung-Chun Chang, Hong-Jie Dai, Johnny Chi-Yang Wu, Jian-Ming Chen, Richard Tzong-Han Tsai, Wen-Lian Hsu:
TEMPTING system: A hybrid method of rule and machine learning for temporal relation extraction in patient discharge summaries. J. Biomed. Informatics 46(6): S54-S62 (2013) - 2012
- [j15]Hong-Jie Dai, Chun-Yu Chen, Chi-Yang Wu, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Coreference resolution of medical concepts in discharge summaries by exploiting contextual information. J. Am. Medical Informatics Assoc. 19(5): 888-896 (2012) - 2011
- [j14]Hong-Jie Dai, Yen-Ching Chang, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Integration of gene normalization stages and co-reference resolution using a Markov logic network. Bioinform. 27(18): 2586-2594 (2011) - [j13]Yu-Ching Fang, Po-Ting Lai, Hong-Jie Dai, Wen-Lian Hsu:
MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature. BMC Bioinform. 12: 471 (2011) - [j12]Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin M. Livingston, W. John Wilbur:
The gene normalization task in BioCreative III. BMC Bioinform. 12(S-8): S2 (2011) - [c12]Hong-Jie Dai, Wei-Chi Tsai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Enhancing Search Results with Semantic Annotation Using Augmented Browsing. IJCAI 2011: 2418-2423 - [c11]Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Entity Disambiguation Using a Markov-Logic Network. IJCNLP 2011: 846-855 - 2010
- [j11]Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai:
Multistage Gene Normalization and SVM-Based Ranking for Protein Interactor Extraction in Full-Text Articles. IEEE ACM Trans. Comput. Biol. Bioinform. 7(3): 412-420 (2010) - [c10]Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Global Ranking via Data Fusion. COLING (Posters) 2010: 223-231
2000 – 2009
- 2009
- [j10]Richard Tzong-Han Tsai, Hong-Jie Dai, Po-Ting Lai, Chi-Hsin Huang:
PubMed-EX: a web browser extension to enhance PubMed search with text mining features. Bioinform. 25(22): 3031-3032 (2009) - [j9]Richard Tzong-Han Tsai, Po-Ting Lai, Hong-Jie Dai, Chi-Hsin Huang, Yue-Yang Bow, Yen-Ching Chang, Wen-Harn Pan, Wen-Lian Hsu:
HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features. BMC Bioinform. 10(S-15): 9 (2009) - [j8]Ryan T. K. Lin, Justin Liang-Te Chiu, Hong-Jie Dai, Richard Tzong-Han Tsai, Min-Yuh Day, Wen-Lian Hsu:
A supervised learning approach to biological question answering. Integr. Comput. Aided Eng. 16(3): 271-281 (2009) - [j7]Ryan T. K. Lin, Hong-Jie Dai, Yue-Yang Bow, Justin Liang-Te Chiu, Richard Tzong-Han Tsai:
Using conditional random fields for result identification in biomedical abstracts. Integr. Comput. Aided Eng. 16(4): 339-352 (2009) - [j6]Hong-Jie Dai, Yen-Ching Chang, Richard Tzong-Han Tsai, Wen-Lian Hsu:
New Challenges for Biological Text-Mining in the Next Decade. J. Comput. Sci. Technol. 25(1): 169-179 (2009) - [c9]Po-Ting Lai, Yue-Yang Bow, Chi-Hsin Huang, Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Using Contextual Information to Clarify Gene Normalization Ambiguity. IRI 2009: 1-5 - 2008
- [j5]Richard Tzong-Han Tsai, Hsi-Chuan Hung, Hong-Jie Dai, Yi-Wen Lin, Wen-Lian Hsu:
Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles. BMC Bioinform. 9(S-1) (2008) - [j4]Richard Tzong-Han Tsai, Hong-Jie Dai, Chi-Hsin Huang, Wen-Lian Hsu:
Semi-automatic conversion of BioProp semantic annotation to PASBio annotation. BMC Bioinform. 9(S-12) (2008) - [j3]Hong-Jie Dai, Chi-Hsin Huang, Ryan T. K. Lin, Richard Tzong-Han Tsai, Wen-Lian Hsu:
BIOSMILE web search: a web application for annotating biomedical entities and relations. Nucleic Acids Res. 36(Web-Server-Issue): 390-398 (2008) - [c8]Ryan T. K. Lin, Hong-Jie Dai, Yue-Yang Bow, Min-Yuh Day, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Result identification for biomedical abstracts using Conditional Random Fields. IRI 2008: 122-126 - [c7]Ryan T. K. Lin, Justin Liang-Te Chiu, Hong-Jie Dai, Min-Yuh Day, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Biological question answering with syntactic and semantic feature matching and an improved mean reciprocal ranking measurement. IRI 2008: 184-189 - [c6]Hong-Jie Dai, Chi-Hsin Huang, Jaimie Yi-Wen Lin, Pei-Hsuan Chou, Richard Tzong-Han Tsai, Wen-Lian Hsu:
A Survey of State of the Art Biomedical Text Mining Techniques for Semantic Analysis. SUTC 2008: 410-417 - 2007
- [j2]Richard Tzong-Han Tsai, Wen-Chi Chou, Ying-Shan Su, Yu-Chun Lin, Cheng-Lung Sung, Hong-Jie Dai, Irene Tzu-Hsuan Yeh, Wei Ku, Ting-Yi Sung, Wen-Lian Hsu:
BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features. BMC Bioinform. 8 (2007) - [c5]Richard Tzong-Han Tsai, Hsi-Chuan Hung, Hong-Jie Dai, Wen-Lian Hsu:
Exploiting unlabeled internal data in conditional random fields to reduce word segmentation errors for Chinese texts. INTERSPEECH 2007: 2885-2888 - [c4]Richard Tzong-Han Tsai, Hong-Jie Dai, Hsi-Chuan Hung, Ryan T. K. Lin, Wen-Chi Chou, Ying-Shan Su, Min-Yuh Day, Wen-Lian Hsu:
BESearch: A Supervised Learning Approach to Search for Molecular Event Participants. IRI 2007: 412-417 - [c3]Richard Tzong-Han Tsai, Hsieh-Chuan Hung, Hong-Jie Dai, Yi-Wen Lin:
Protein-Protein Interaction Abstract Identification with Contextual Bag of Words. LBM (Short Papers) 2007 - 2006
- [j1]Richard Tzong-Han Tsai, Cheng-Lung Sung, Hong-Jie Dai, Hsieh-Chuan Hung, Ting-Yi Sung, Wen-Lian Hsu:
NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition. BMC Bioinform. 7(S-5) (2006) - [c2]Richard Tzong-Han Tsai, Hsieh-Chuan Hung, Cheng-Lung Sung, Hong-Jie Dai, Wen-Lian Hsu:
On Closed Task of Chinese Word Segmentation: An Improved CRF Model Coupled with Character Clustering and Automatically Generated Template Matching. SIGHAN@COLING/ACL 2006: 134-137 - [c1]Richard Tzong-Han Tsai, Hong-Jie Dai, Hsieh-Chuan Hung, Cheng-Lung Sung, Min-Yuh Day, Wen-Lian Hsu:
Chinese word segmentation with minimal linguistic knowledge: An improved conditional random fields coupled with character clustering and automatically discovered template matching. IRI 2006: 274-279
Coauthor Index
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