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ORCIDAedín C. Culhane
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2020 – today
- 2024
[i1]Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean Davis, Maria A. Doyle, Susan Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson:
Learning and teaching biological data science in the Bioconductor community. CoRR abs/2410.01351 (2024)- 2023
- [j19]Kelly B. Eckenrode
, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron:
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol. 19(8) (2023)
2010 – 2019
- 2016
- [j18]Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron:
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17(4): 603-615 (2016) - [j17]Chen Meng, Oana A. Zeleznik, Gerhard G. Thallinger, Bernhard Küster, Amin Moghaddas Gholami, Aedín C. Culhane:
Dimension reduction techniques for the integrative analysis of multi-omics data. Briefings Bioinform. 17(4): 628-641 (2016) - [p1]Chen Meng, Aedín C. Culhane:
Integrative Exploratory Analysis of Two or More Genomic Datasets. Statistical Genomics 2016: 19-38 - 2014
- [j16]Chen Meng, Bernhard Küster, Aedín C. Culhane, Amin Moghaddas Gholami:
A multivariate approach to the integration of multi-omics datasets. BMC Bioinform. 15: 162 (2014) - 2013
- [j15]Markus S. Schröder, Daniel Gusenleitner, John Quackenbush, Aedín C. Culhane, Benjamin Haibe-Kains:
RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface. Bioinform. 29(5): 666-668 (2013) - [j14]Andrew H. Beck, Nicholas W. Knoblauch, Marco M. Hefti, Jennifer Kaplan, Stuart J. Schnitt, Aedín C. Culhane, Markus S. Schröder, Thomas Risch, John Quackenbush, Benjamin Haibe-Kains:
Significance Analysis of Prognostic Signatures. PLoS Comput. Biol. 9(1) (2013) - 2012
- [j13]Daniel Gusenleitner, Eleanor Howe, Stefan Bentink, John Quackenbush, Aedín C. Culhane:
iBBiG: iterative binary bi-clustering of gene sets. Bioinform. 28(19): 2484-2492 (2012) - [j12]Shannan J. Ho Sui, Kimberly Begley, Dorothy Reilly, Brad Chapman, Ray McGovern, Philippe Rocca-Serra, Eamonn Maguire, Gabriel M. Altschuler, Terah A. A. Hansen, Ramakrishna Sompallae, Andrei Krivtsov, Ramesh A. Shivdasani, Scott A. Armstrong, Aedín C. Culhane, Mick Correll, Susanna-Assunta Sansone, Oliver Hofmann, Winston Hide:
The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons. Nucleic Acids Res. 40(Database-Issue): 984-991 (2012) - [j11]Aedín C. Culhane, Markus S. Schröder, Razvan Sultana, Shaita C. Picard, Enzo N. Martinelli, Caroline Kelly, Benjamin Haibe-Kains, Misha Kapushesky, Anne-Alyssa St Pierre, William Flahive, Kermshlise C. Picard, Daniel Gusenleitner, Gerald Papenhausen, Niall O'Connor, Mick Correll, John Quackenbush:
GeneSigDB: a manually curated database and resource for analysis of gene expression signatures. Nucleic Acids Res. 40(Database-Issue): 1060-1066 (2012) - [j10]Misha Kapushesky, Tomasz Adamusiak, Tony Burdett, Aedín C. Culhane, Anna Farne, Alexey Filippov, Ele Holloway, Andrey Klebanov, Nataliya Kryvych, Natalja Kurbatova, Pavel Kurnosov, James Malone, Olga Melnichuk, Robert Petryszak, Nikolay Pultsin, Gabriella Rustici, Andrew Tikhonov, Ravensara S. Travillian, Eleanor Williams, Andrey Zorin, Helen E. Parkinson, Alvis Brazma:
Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res. 40(Database-Issue): 1077-1081 (2012) - 2011
- [j9]Markus S. Schröder, Aedín C. Culhane, John Quackenbush, Benjamin Haibe-Kains:
survcomp: an R/Bioconductor package for performance assessment and comparison of survival models. Bioinform. 27(22): 3206-3208 (2011) - 2010
- [j8]Aedín C. Culhane, Thomas Schwarzl, Razvan Sultana, Kermshlise C. Picard, Shaita C. Picard, Tim H. Lu, Katherine R. Franklin, Simon J. French, Gerald Papenhausen, Mick Correll, John Quackenbush:
GeneSigDB - a curated database of gene expression signatures. Nucleic Acids Res. 38(Database-Issue): 716-725 (2010)
2000 – 2009
- 2009
- [r1]Amira Djebbari, Aedín C. Culhane, Alice Armstrong, John Quackenbush:
AI Methods for Analyzing Microarray Data. Encyclopedia of Artificial Intelligence 2009: 65-70 - 2007
- [j7]Ian B. Jeffery, Stephen F. Madden, Paul A. McGettigan, Guy Perrière, Aedín C. Culhane, Desmond G. Higgins:
Integrating transcription factor binding site information with gene expression datasets. Bioinform. 23(3): 298-305 (2007) - 2006
- [j6]Ian B. Jeffery, Desmond G. Higgins, Aedín C. Culhane:
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data. BMC Bioinform. 7: 359 (2006) - 2005
- [j5]Aedín C. Culhane, Jean Thioulouse, Guy Perrière, Desmond G. Higgins:
MADE4: an R package for multivariate analysis of gene expression data. Bioinform. 21(11): 2789-2790 (2005) - [j4]Florent Baty, Michel P. Bihl, Guy Perrière, Aedín C. Culhane, Martin H. Brutsche:
Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data. BMC Bioinform. 6: 239 (2005) - 2004
- [j3]Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma:
Expression Profiler: next generation - an online platform for analysis of microarray data. Nucleic Acids Res. 32(Web-Server-Issue): 465-470 (2004) - 2003
- [j2]Aedín C. Culhane, Guy Perrière, Desmond G. Higgins:
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis. BMC Bioinform. 4: 59 (2003) - 2002
- [j1]Aedín C. Culhane, Guy Perrière, Elizabeth C. Considine, Thomas G. Cotter, Desmond G. Higgins:
Between-group analysis of microarray data. Bioinform. 18(12): 1600-1608 (2002)
Coauthor Index
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