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ORCIDAndrey Rzhetsky
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2020 – today
- 2023
[j31]Gengjie Jia
, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi Terao, Masato Akiyama, Koichi Matsuda, David E. Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao, Andrey Rzhetsky:
The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nat. Comput. Sci. 3(5): 403-417 (2023)- [j30]Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi Terao, Masato Akiyama, Koichi Matsuda, David E. Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao, Andrey Rzhetsky:
Author Correction: The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nat. Comput. Sci. 3(7): 658 (2023) - 2022
- [j29]Alexander V. Belikov, Andrey Rzhetsky, James A. Evans:
Prediction of robust scientific facts from literature. Nat. Mach. Intell. 4(5): 445-454 (2022) - [j28]Jonathan M. Matthews, Brooke Schuster, Sara Saheb Kashaf, Ping Liu, Rakefet Ben-Yishay, Dana Ishay-Ronen, Evgeny Izumchenko, Le Shen, Christopher R. Weber, Margaret Bielski, Sonia S. Kupfer, Mustafa Bilgic, Andrey Rzhetsky, Savas Tay:
OrganoID: A versatile deep learning platform for tracking and analysis of single-organoid dynamics. PLoS Comput. Biol. 18(11): 1010584 (2022) - 2021
- [j27]Yanan Long, Qi Chen, Henrik Larsson, Andrey Rzhetsky:
Observable variations in human sex ratio at birth. PLoS Comput. Biol. 17(12) (2021) - [c20]Chao Zhang, Jaswanth K. Yella, Yu Huang, Xiaoye Qian, Sergei Petrov, Andrey Rzhetsky, Sthitie Bom:
Soft Sensing Transformer: Hundreds of Sensors are Worth a Single Word. IEEE BigData 2021: 1999-2008 - [i6]Chao Zhang, Hanxin Zhang, Atif Ali Khan, Ted Kim, Olasubomi Omoleye, Oluwamayomikun Abiona, Amy Lehman, Christopher O. Olopade, Olufunmilayo I. Olopade, Pedro Lopes, Andrey Rzhetsky:
Lightweight Mobile Automated Assistant-to-physician for Global Lower-resource Areas. CoRR abs/2110.15127 (2021) - [i5]Chao Zhang, Jaswanth K. Yella, Yu Huang, Xiaoye Qian, Sergei Petrov, Andrey Rzhetsky, Sthitie Bom:
Soft Sensing Transformer: Hundreds of Sensors are Worth a Single Word. CoRR abs/2111.05973 (2021) - 2020
- [j26]Hanxin Zhang, Torsten Dahlén, Atif Ali Khan, Gustaf Edgren, Andrey Rzhetsky:
Measurable health effects associated with the daylight saving time shift. PLoS Comput. Biol. 16(6) (2020) - [i4]Alexander V. Belikov, Andrey Rzhetsky, James A. Evans:
Detecting signal from science: The structure of research communities and prior knowledge improves prediction of genetic regulatory experiments. CoRR abs/2008.09985 (2020)
2010 – 2019
- 2019
- [c19]Hrant Khachatrian, Lilit Nersisyan, Karen Hambardzumyan, Tigran Galstyan, Anna Hakobyan, Arsen Arakelyan, Andrey Rzhetsky, Aram Galstyan:
BioRelEx 1.0: Biological Relation Extraction Benchmark. BioNLP@ACL 2019: 176-190 - 2018
- [j25]Ji-Sung Kim, Xin Gao, Andrey Rzhetsky:
RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning. PLoS Comput. Biol. 14(4) (2018) - [i3]Valentin Danchev, Andrey Rzhetsky, James A. Evans:
Centralized "big science" communities more likely generate non-replicable results. CoRR abs/1801.05042 (2018) - 2017
- [i2]Ji-Sung Kim, Andrey Rzhetsky:
RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning. CoRR abs/1707.01623 (2017) - 2016
- [c18]Andrey Rzhetsky:
The Big Mechanism Program: Changing How Science Is Done. DAMDID/RCDL 2016: 1-2 - 2014
- [j24]Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky, Fengzhu Sun, Michael S. Waterman, Jeremy J. W. Chen, Preet M. Chaudhary, Joseph Loscalzo, Edward Crandall, Xianghong Jasmine Zhou:
DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Res. 42(Webserver-Issue): 137-146 (2014) - [j23]Andrey Rzhetsky, Steven C. Bagley, Kanix Wang, Christopher S. Lyttle, Edwin H. Cook Jr., Russ B. Altman, Robert D. Gibbons:
Environmental and State-Level Regulatory Factors Affect the Incidence of Autism and Intellectual Disability. PLoS Comput. Biol. 10(3) (2014) - [j22]David R. Blair, Kanix Wang, Svetlozar Nestorov, James A. Evans, Andrey Rzhetsky:
Quantifying the Impact and Extent of Undocumented Biomedical Synonymy. PLoS Comput. Biol. 10(9) (2014) - 2013
- [j21]Larisa N. Soldatova, Andrey Rzhetsky, Kurt De Grave, Ross D. King:
Representation of probabilistic scientific knowledge. J. Biomed. Semant. 4(S-1): S7 (2013) - [i1]Jacob G. Foster, Andrey Rzhetsky, James A. Evans:
Tradition and Innovation in Scientists' Research Strategies. CoRR abs/1302.6906 (2013) - 2012
- [c17]Shi Yu, Robert Grossman, Andrey Rzhetsky:
Global and Local Approach of Part-of-Speech Tagging for Large Corpora. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text 2012 - 2011
- [j20]Larisa N. Soldatova, Andrey Rzhetsky:
Representation of research hypotheses. J. Biomed. Semant. 2(S-2): S9 (2011) - [j19]Lixia Yao, Anna Divoli, Ilya Mayzus, James A. Evans, Andrey Rzhetsky:
Benchmarking Ontologies: Bigger or Better? PLoS Comput. Biol. 7(1) (2011) - [j18]Andrey Rzhetsky, James A. Evans:
War of Ontology Worlds: Mathematics, Computer Code, or Esperanto? PLoS Comput. Biol. 7(9) (2011) - [j17]Anna Divoli, Eneida A. Mendonça, James A. Evans, Andrey Rzhetsky:
Conflicting Biomedical Assumptions for Mathematical Modeling: The Case of Cancer Metastasis. PLoS Comput. Biol. 7(10) (2011) - [c16]Andrey Rzhetsky:
Understanding Etiology of Complex Neurodevelopmental Disorders: Two Approaches. AIME 2011: 1 - [c15]Atilla Soner Balkir, Ian T. Foster, Andrey Rzhetsky:
A distributed look-up architecture for text mining applications using mapreduce. HPDC 2011: 279-280 - [c14]Atilla Soner Balkir, Ian T. Foster, Andrey Rzhetsky:
A distributed look-up architecture for text mining applications using MapReduce. SC 2011: 59:1-59:11 - [e2]Robert Grossman, Andrey Rzhetsky, Sun Kim, Wei Wang:
ACM International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 11, Chicago, IL, USA - July 31 - August 03, 2011. ACM 2011, ISBN 978-1-4503-0796-3 [contents] - 2010
- [c13]Sonjia Waxmonsky, John Goldsmith, Andrey Rzhetsky:
Discovering and Counting Biomedical Verbs. ICMLA 2010: 975-978
2000 – 2009
- 2009
- [j16]Andrey Rzhetsky, Hagit Shatkay, W. John Wilbur:
How to Get the Most out of Your Curation Effort. PLoS Comput. Biol. 5(5) (2009) - [j15]Andrey Rzhetsky, Michael R. Seringhaus, Mark B. Gerstein:
Getting Started in Text Mining: Part Two. PLoS Comput. Biol. 5(7) (2009) - [j14]Ivan Iossifov, Raul Rodriguez-Esteban, Ilya Mayzus, Kathleen J. Millen, Andrey Rzhetsky:
Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans. PLoS Comput. Biol. 5(11) (2009) - 2008
- [j13]Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky, W. John Wilbur:
Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users. Bioinform. 24(18): 2086-2093 (2008) - [j12]Lixia Yao, Andrey Rzhetsky:
Quantitative systems-level determinants of drug targets. BMC Bioinform. 9(S-10) (2008) - 2006
- [j11]W. John Wilbur, Andrey Rzhetsky, Hagit Shatkay:
New directions in biomedical text annotation: definitions, guidelines and corpus construction. BMC Bioinform. 7: 356 (2006) - [j10]Raul Rodriguez-Esteban, Ivan Iossifov, Andrey Rzhetsky:
Imitating Manual Curation of Text-Mined Facts in Biomedicine. PLoS Comput. Biol. 2(9) (2006) - [c12]Andrey Rzhetsky:
Mining biomedical texts for disease-related pathways. BioNLP@NAACL-HLT 2006: 81 - 2005
- [j9]Mark Borodovsky, Andrey Rzhetsky, Dmitrij Frishman:
The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: in silico Biology, Computational Genomics and Evolutionary Biology. Bioinform. 21(S3): 1 (2005) - 2004
- [j8]Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky:
Probabilistic inference of molecular networks from noisy data sources. Bioinform. 20(8): 1205-1213 (2004) - [j7]Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur:
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. J. Biomed. Informatics 37(1): 43-53 (2004) - 2003
- [j6]Shawn M. Gomez, William Stafford Noble, Andrey Rzhetsky:
Learning to predict protein-protein interactions from protein sequences. Bioinform. 19(15): 1875-1881 (2003) - 2002
- [j5]Carol Friedman, Pauline Kra, Andrey Rzhetsky:
Two biomedical sublanguages: a description based on the theories of Zellig Harris. J. Biomed. Informatics 35(4): 222-235 (2002) - [j4]Hong Yu, Vasileios Hatzivassiloglou, Andrey Rzhetsky, W. John Wilbur:
Automatically identifying gene/protein terms in MEDLINE abstracts. J. Biomed. Informatics 35(5-6): 322-330 (2002) - [c11]Hong Yu, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky, W. John Wilbur:
Automatic extraction of gene and protein synonyms from MEDLINE and journal articles. AMIA 2002 - [c10]Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky:
Of truth and pathways: chasing bits of information through myriads of articles. ISMB 2002: 249-257 - [c9]Shawn M. Gomez, Andrey Rzhetsky:
Towards the Prediction of Complete Protein-Protein Interaction Networks. Pacific Symposium on Biocomputing 2002: 413-424 - 2001
- [j3]Andrey Rzhetsky, Shawn M. Gomez:
Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome. Bioinform. 17(10): 988-996 (2001) - [c8]Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman:
GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics 2001: 2-5 - [c7]Carol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky:
GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. ISMB (Supplement of Bioinformatics) 2001: 74-82 - [c6]Vasileios Hatzivassiloglou, Pablo Ariel Duboué, Andrey Rzhetsky:
Disambiguating proteins, genes, and RNA in text: a machine learning approach. ISMB (Supplement of Bioinformatics) 2001: 97-106 - [c5]Andrey Rzhetsky, Pavel Morozov:
Markov Chain Monte Carlo Computation of Confidence Intervals for Substitution-Rate Variation in Proteins. Pacific Symposium on Biocomputing 2001: 203-214 - 2000
- [j2]Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Shawn M. Gomez, Michael Krauthammer, Sabina H. Kaplan, Pauline Kra, James J. Russo, Carol Friedman:
A knowledge model for analysis and simulation of regulatory networks. Bioinform. 16(12): 1120-1128 (2000) - [c4]Michael Krauthammer, Andrey Rzhetsky, Pavel Morozov, Carol Friedman:
Using BLAST, A DNA and Protein Sequence Comparison Tool, for Finding Gene and Protein Names in Journal Articles. AMIA 2000
1990 – 1999
- 1999
- [c3]Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Pauline Kra, Carol Friedman:
A Knowledge Model for Analysis and Simulation of Regulatory Based on Information in Electronic Publications. AMIA 1999 - [c2]Hong Yu, Carol Friedman, Andrey Rzhetsky, Pauline Kra:
Representing genomic knowledge in the UMLS semantic network. AMIA 1999 - 1997
- [e1]Boris G. Mirkin, Fred R. McMorris, Fred S. Roberts, Andrey Rzhetsky:
Mathematical Hierarchies and Biology, Proceedings of a DIMACS Workshop, November 13-15, 1996. DIMACS Series in Discrete Mathematics and Theoretical Computer Science 37, DIMACS/AMS 1997, ISBN 978-0-8218-0762-0 [contents] - 1996
- [c1]Andrey Rzhetsky, Francisco José Ayala, Lily C. Hsu, Cheng Chang, Akira Yoshida:
Fitting models of intron evolution to aldehyde dehydrogenase data. Mathematical Hierarchies and Biology 1996: 95-110 - 1994
- [j1]Andrey Rzhetsky, Masatoshi Nei:
METREE: a program package for inferring and testing minimum-evolution trees. Comput. Appl. Biosci. 10(4): 409-412 (1994)
Coauthor Index
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