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2020 – today
- 2022
[j13]Carlos Bueno
, James Liman, Nicholas P. Schafer, Margaret S. Cheung, Peter G. Wolynes:
A generalized Flory-Stockmayer kinetic theory of connectivity percolation and rigidity percolation of cytoskeletal networks. PLoS Comput. Biol. 18(5) (2022)- [j12]Xinyu Gu, Nicholas P. Schafer, Carlos Bueno, Wei Lu, Peter G. Wolynes:
A structural dynamics model for how CPEB3 binding to SUMO2 can regulate translational control in dendritic spines. PLoS Comput. Biol. 18(11): 1010657 (2022) - 2021
- [j11]Atilio O. Rausch, Maria I Freiberger, Cesar O. Leonetti, Diego M. Luna, Leandro G. Radusky, Peter G. Wolynes, Diego U. Ferreiro, R. Gonzalo Parra:
FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations. Bioinform. 37(18): 3038-3040 (2021) - [j10]Vinícius G. Contessoto, Ryan R. Cheng, Arya Hajitaheri, Esteban Dodero-Rojas, Matheus F. Mello, Erez Lieberman Aiden, Peter G. Wolynes, Michele Di Pierro, José N. Onuchic:
The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome. Nucleic Acids Res. 49(Database-Issue): D172-D182 (2021) - [j9]Wei Lu, Carlos Bueno, Nicholas P. Schafer, Joshua Moller, Shikai Jin, Xun Chen, Mingchen Chen, Xinyu Gu, Aram Davtyan, Juan J. de Pablo, Peter G. Wolynes:
OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations. PLoS Comput. Biol. 17(2) (2021) - 2020
- [j8]Shikai Jin, Vinícius G. Contessoto, Mingchen Chen, Nicholas P. Schafer, Wei Lu, Xun Chen, Carlos Bueno, Arya Hajitaheri, Brian J. Sirovetz, Aram Davtyan, Garegin A. Papoian, Min-Yeh Tsai, Peter G. Wolynes:
AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes. Nucleic Acids Res. 48(Webserver-Issue): W25-W30 (2020)
2010 – 2019
- 2016
- [j7]R. Gonzalo Parra, Nicholas P. Schafer, Leandro G. Radusky, Min-Yeh Tsai, A. Brenda Guzovsky, Peter G. Wolynes, Diego U. Ferreiro:
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics. Nucleic Acids Res. 44(Webserver-Issue): W356-W360 (2016) - 2012
- [j6]Michael Jenik, R. Gonzalo Parra, Leandro G. Radusky, Adrian Gustavo Turjanski, Peter G. Wolynes, Diego U. Ferreiro:
Protein frustratometer: a tool to localize energetic frustration in protein molecules. Nucleic Acids Res. 40(Web-Server-Issue): 348-351 (2012) - 2010
- [j5]Michael C. Prentiss, David J. Wales, Peter G. Wolynes:
The Energy Landscape, Folding Pathways and the Kinetics of a Knotted Protein. PLoS Comput. Biol. 6(7) (2010)
2000 – 2009
- 2008
- [j4]Diego U. Ferreiro, Aleksandra M. Walczak, Elizabeth A. Komives, Peter G. Wolynes:
The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures. PLoS Comput. Biol. 4(5) (2008) - 2002
- [j3]Corey Hardin, Michael P. Eastwood, Michael C. Prentiss, Zaida Luthey-Schulten, Peter G. Wolynes:
Folding funnels: The key to robust protein structure prediction. J. Comput. Chem. 23(1): 138-146 (2002) - 2001
- [j2]Michael P. Eastwood, Corey Hardin, Zaida Luthey-Schulten, Peter G. Wolynes:
Evaluating protein structure-prediction schemes using energy landscape theory. IBM J. Res. Dev. 45(3): 475-498 (2001)
1990 – 1999
- 1994
- [c1]Richard A. Goldstein, Zaida Luthey-Schulten, Peter G. Wolynes:
A Bayesian Approach to Sequence Alignment Algorithms for Protein Structure Recognition. HICSS (5) 1994: 306-315 - 1992
- [j1]J. Irwin, Henrik G. Bohr, K. Mochizuki, Peter G. Wolynes:
Classification and Prediction of Protein Side-Chains by Neural Network Techniques. Int. J. Neural Syst. 3(Supplement): 177-182 (1992)
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