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Falk Schreiber

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affiliation: University of Konstanz, Germany
affiliation (former): Monash University, Melbourne, Australia

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2020 – today

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2024
[j88]
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Sabrina Jaeger-Honz, Karsten Klein, Falk Schreiber:
Systematic analysis, aggregation and visualisation of interaction fingerprints for molecular dynamics simulation data. J. Cheminformatics 16(1): 28 (2024)
[j87]
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Martin Golebiewski, Gary D. Bader, Padraig Gleeson, Thomas E. Gorochowski, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber:
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. J. Integr. Bioinform. 21(1) (2024)
[j86]
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Stefan Paul Feyer, Bruno Pinaud, Karsten Klein, Etienne Lein, Falk Schreiber:
Exploring animal behaviour multilayer networks in immersive environments - a conceptual framework. J. Integr. Bioinform. 21(3) (2024)
[j85]
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Niklas Gröne, Benjamin Grüneisen, Karsten Klein, Bernard de Bono, Tobias Czauderna, Falk Schreiber:
Layout of anatomical structures and blood vessels based on the foundational model of anatomy. J. Integr. Bioinform. 21(3) (2024)
[j84]
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Nicolai Kraus, Michael Aichem, Karsten Klein, Etienne Lein, Alex Jordan, Falk Schreiber:
TIBA: A web application for the visual analysis of temporal occurrences, interactions, and transitions of animal behavior. PLoS Comput. Biol. 20(10): 1012425 (2024)
[j83]
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Stefan P. Feyer, Bruno Pinaud, Stephen G. Kobourov, Nicolas Brich, Michael Krone, Andreas Kerren, Michael Behrisch, Falk Schreiber, Karsten Klein:
2D, 2.5D, or 3D? An Exploratory Study on Multilayer Network Visualisations in Virtual Reality. IEEE Trans. Vis. Comput. Graph. 30(1): 469-479 (2024)
[c56]
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  - conf/gd/ForsterKDE0KLMM24
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Henry Förster, Felix Klesen, Tim Dwyer, Peter Eades, Seok-Hee Hong, Stephen G. Kobourov, Giuseppe Liotta, Kazuo Misue, Fabrizio Montecchiani, Alexander Pastukhov, Falk Schreiber:
GraphTrials: Visual Proofs of Graph Properties. GD 2024: 16:1-16:18
[c55]
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Stefan P. Feyer, Wilhelm Kerle-Malcharek, Ying Zhang, Falk Schreiber, Karsten Klein:
Immersive Analytics of Graphs in Virtual Reality with GAV-VR (Software Abstract). GD 2024: 57:1-57:3
[d8]
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Michael Aichem, Karsten Klein, Stephen G. Kobourov, Falk Schreiber:
Supplemental Materials for: "De-emphasise, Aggregate, and Hide: A Study on Interactive Visual Transformations for Group Structures in Network Visualisations". 2.0. DaRUS, 2024 [all versions]
[i8]
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  - journals/corr/abs-2407-00511
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Kathryn Gray, Brian Bell, Diana Sieper, Stephen G. Kobourov, Falk Schreiber, Karsten Klein, Seokhee Hong:
Wooly Graphs : A Mathematical Framework For Knitting. CoRR abs/2407.00511 (2024)
[i7]
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  - journals/corr/abs-2409-02907
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Henry Förster, Felix Klesen, Tim Dwyer, Peter Eades, Seok-Hee Hong, Stephen G. Kobourov, Giuseppe Liotta, Kazuo Misue, Fabrizio Montecchiani, Alexander Pastukhov, Falk Schreiber:
GraphTrials: Visual Proofs of Graph Properties. CoRR abs/2409.02907 (2024)
[i6]
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  - journals/corr/abs-2412-14776
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Dimitar Garkov, Tommaso Piselli, Emilio Di Giacomo, Karsten Klein, Giuseppe Liotta, Fabrizio Montecchiani, Falk Schreiber:
Collaborative Problem Solving in Mixed Reality: A Study on Visual Graph Analysis. CoRR abs/2412.14776 (2024)
2023
[j82]
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  - journals/bioinformatics/KernJSS23
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Martin Kern, Sabrina Jaeger-Honz, Falk Schreiber, Björn Sommer:
APL@voro - interactive visualization and analysis of cell membrane simulations. Bioinform. 39(2) (2023)
[j81]
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  - journals/jib/KonigGGGHKMNSWS23
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Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber:
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. J. Integr. Bioinform. 20(1) (2023)
[j80]
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  - journals/vciba/ZhangKSS23
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Ying Zhang, Karsten Klein, Falk Schreiber, Kamran Safi:
Beyond the horizon: immersive developments for animal ecology research. Vis. Comput. Ind. Biomed. Art 6(1): 11 (2023)
[c54]
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Peter Eades, Niklas Gröne, Karsten Klein, Patrick Eades, Leo Schreiber, Ulf Hailer, Falk Schreiber:
CelticGraph: Drawing Graphs as Celtic Knots and Links. GD (1) 2023: 18-35
[c53]
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  - conf/icat/KerleMalcharekFSK23
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Wilhelm Kerle-Malcharek, Stefan Paul Feyer, Falk Schreiber, Karsten Klein:
GAV-VR: An Extensible Framework for Graph Analysis and Visualisation in Virtual Reality. ICAT-EGVE 2023: 131-139
[d7]
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Michael Aichem, Karsten Klein, Stephen G. Kobourov, Falk Schreiber:
Supplemental Materials for: "De-emphasise, Aggregate, and Hide: Exploring the Effects of Group-Based Visual Transformations for Interactive Clutter Reduction in Network Visualisations". 1.0. DaRUS, 2023 [all versions]
[d6]
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Stefan P. Feyer, Bruno Pinaud, Stephen G. Kobourov, Nicolas Brich, Michael Krone, Andreas Kerren, Falk Schreiber, Karsten Klein:
Supplemental Material: "2D, 2.5D, or 3D? An Exploratory Study on Multilayer Network Visualizations in Virtual Reality". DaRUS, 2023
[d5]
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Dimitar Garkov, Christoph Müller, Matthias Braun, Daniel Weiskopf, Falk Schreiber:
"Research Data Curation in Visualization : Position Paper" (Data). 1.2. DaRUS, 2023 [all versions]
[d4]
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Dimitar Garkov, Christoph Müller, Matthias Braun, Daniel Weiskopf, Falk Schreiber:
"Research Data Curation in Visualization : Position Paper" (Data). 1.3. DaRUS, 2023 [all versions]
[i5]
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  - journals/corr/abs-2307-10674
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Stefan P. Feyer, Bruno Pinaud, Stephen G. Kobourov, Nicolas Brich, Michael Krone, Andreas Kerren, Michael Behrisch, Falk Schreiber, Karsten Klein:
2D, 2.5D, or 3D? An Exploratory Study on Multilayer Network Visualisations in Virtual Reality. CoRR abs/2307.10674 (2023)
[i4]
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  - journals/corr/abs-2309-02852
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Peter Eades, Niklas Gröne, Karsten Klein, Patrick Eades, Leo Schreiber, Ulf Hailer, Falk Schreiber:
CelticGraph: Drawing Graphs as Celtic Knots and Links. CoRR abs/2309.02852 (2023)
2022
[j79]
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  - journals/bib/NiarakisWGSKNCS22
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Anna Niarakis, Dagmar Waltemath, James A. Glazier, Falk Schreiber, Sarah M. Keating, David P. Nickerson, Claudine Chaouiya, Anne Siegel, Vincent Noël, Henning Hermjakob, Tomás Helikar, Sylvain Soliman, Laurence Calzone:
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology. Briefings Bioinform. 23(4) (2022)
[j78]
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  - journals/cgf/KrausFSKEKS22
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Matthias Kraus, Johannes Fuchs, Björn Sommer, Karsten Klein, Ulrich Engelke, Daniel A. Keim, Falk Schreiber:
Immersive Analytics with Abstract 3D Visualizations: A Survey. Comput. Graph. Forum 41(1): 201-229 (2022)
[j77]
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  - journals/it/SchreiberW22
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Falk Schreiber, Daniel Weiskopf:
Quantitative visual computing. it Inf. Technol. 64(4-5): 119-120 (2022)
[j76]
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  - journals/it/KleinSS22
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Karsten Klein, Michael Sedlmair, Falk Schreiber:
Immersive analytics: An overview. it Inf. Technol. 64(4-5): 155-168 (2022)
[j75]
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Falk Schreiber, Tobias Czauderna:
Design considerations for representing systems biology information with the Systems Biology Graphical Notation. J. Integr. Bioinform. 19(2) (2022)
[j74]
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Michael Aichem, Karsten Klein, Tobias Czauderna, Dimitar Garkov, Jinxin Zhao, Jian Li, Falk Schreiber:
Towards a hybrid user interface for the visual exploration of large biomolecular networks using virtual reality. J. Integr. Bioinform. 19(4) (2022)
[j73]
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Lucas Joos, Sabrina Jaeger-Honz, Falk Schreiber, Daniel A. Keim, Karsten Klein:
Visual Comparison of Networks in VR. IEEE Trans. Vis. Comput. Graph. 28(11): 3651-3661 (2022)
[j72]
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  - journals/vciba/BienrothNGKJRS22
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Denis Bienroth, Hieu T. Nim, Dimitar Garkov, Karsten Klein, Sabrina Jaeger-Honz, Mirana Ramialison, Falk Schreiber:
Spatially resolved transcriptomics in immersive environments. Vis. Comput. Ind. Biomed. Art 5(1): 2 (2022)
[c52]
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  - conf/beliv/GarkovMBWS22
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Dimitar Garkov, Christoph Müller, Matthias Braun, Daniel Weiskopf, Falk Schreiber:
Research Data Curation in Visualization : Position Paper. BELIV 2022: 56-65
[d3]
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Dimitar Garkov, Christoph Müller, Matthias Braun, Daniel Weiskopf, Falk Schreiber:
"Research Data Curation in Visualization : Position Paper" (Data). 1.0. DaRUS, 2022 [all versions]
[d2]
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Dimitar Garkov, Christoph Müller, Matthias Braun, Daniel Weiskopf, Falk Schreiber:
"Research Data Curation in Visualization : Position Paper" (Data). 1.1. DaRUS, 2022 [all versions]
[d1]
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Dimitar Garkov, Christoph Müller, Karsten Klein, Thomas Ertl, Falk Schreiber:
Guidelines on Replication and Research Data Management by Task Force A. DaRUS, 2022
2021
[j71]
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Karsten Klein, Dimitar Garkov, Sina Rütschlin, Thomas Böttcher, Falk Schreiber:
QSDB - a graphical Quorum Sensing Database. Database J. Biol. Databases Curation 2021 (2021)
[j70]
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Karsten Klein, Dimitar Garkov, Sina Rütschlin, Thomas Böttcher, Falk Schreiber:
Corrigendum to: QSDB - a graphical Quorum Sensing Database. Database J. Biol. Databases Curation 2021 (2021)
[j69]
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Michael Aichem, Tobias Czauderna, Yan Zhu, Jinxin Zhao, Matthias Klapperstück, Karsten Klein, Jian Li, Falk Schreiber:
Visual exploration of large metabolic models. Bioinform. 37(23): 4460-4468 (2021)
[j68]
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Matthias Kraus, Karsten Klein, Johannes Fuchs, Daniel A. Keim, Falk Schreiber, Michael Sedlmair, Theresa-Marie Rhyne:
The Value of Immersive Visualization. IEEE Computer Graphics and Applications 41(4): 125-132 (2021)
[j67]
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Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath:
Specifications of standards in systems and synthetic biology: status and developments in 2021. J. Integr. Bioinform. 18(3) (2021)
[j66]
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Karsten Klein, Sabrina Jaeger, Jörg Melzheimer, Bettina Wachter, Heribert Hofer, Artur Baltabayev, Falk Schreiber:
Visual analytics of sensor movement data for cheetah behaviour analysis. J. Vis. 24(4): 807-825 (2021)
[j65]
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Karsten Klein, Michael Aichem, Ying Zhang, Stefan Erk, Björn Sommer, Falk Schreiber:
TEAMwISE: synchronised immersive environments for exploration and analysis of animal behaviour. J. Vis. 24(4): 845-859 (2021)
2020
[j64]
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Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath:
Specifications of standards in systems and synthetic biology: status and developments in 2020. J. Integr. Bioinform. 17(2-3) (2020)
[j63]
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Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik-Sheriff, David P. Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers:
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). J. Integr. Bioinform. 17(2-3) (2020)
[c51]
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Joseph Kotlarek, Oh-Hyun Kwon, Kwan-Liu Ma, Peter Eades, Andreas Kerren, Karsten Klein, Falk Schreiber:
A Study of Mental Maps in Immersive Network Visualization. PacificVis 2020: 1-10
[i3]
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  - journals/corr/abs-2001-06462
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Joseph Kotlarek, Oh-Hyun Kwon, Kwan-Liu Ma, Peter Eades, Andreas Kerren, Karsten Klein, Falk Schreiber:
A Study of Mental Maps in Immersive Network Visualization. CoRR abs/2001.06462 (2020)

2010 – 2019

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2019
[j62]
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Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna:
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. J. Integr. Bioinform. 16(2) (2019)
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Falk Schreiber, Björn Sommer, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019. J. Integr. Bioinform. 16(2) (2019)
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Dimitar Garkov, Karsten Klein, Christian Klukas, Falk Schreiber:
Mental-Map Preserving Visualisation of Partitioned Networks in Vanted. J. Integr. Bioinform. 16(3) (2019)
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Marcel Friedrichs, Alban Shoshi, Piotr Chmura, Jon C. Ison, Veit Schwämmle, Falk Schreiber, Ralf Hofestädt, Björn Sommer:
JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools. J. Integr. Bioinform. 16(4) (2019)
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Sabrina Jaeger, Karsten Klein, Lucas Joos, Johannes Zagermann, Michael de Ridder, Jinman Kim, Jean Yee Hwa Yang, Ulrike Pfeil, Harald Reiterer, Falk Schreiber:
Challenges for Brain Data Analysis in VR Environments. PacificVis 2019: 42-46
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Björn Sommer, Alexandra Diehl, Michael Aichem, Philipp Meschenmoser, Kim Rehberg, David Weber, Ying Zhang, Karsten Klein, Daniel A. Keim, Falk Schreiber:
Tiled Stereoscopic 3D Display Wall - Concept, Applications and Evaluation. SD&A 2019: 1-15
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Bjorn Sommer, Stefan P. Feyer, Daniel Klinkhammer, Karsten Klein, Jonathan Wieland, Daniel Fink, Wolfgang Fiedler, Andrea Flack, Máté Nagy, Martin Wikelski, Harald Reiterer, Falk Schreiber:
BinocularsVR - A VR experience for the exhibition "From Lake Constance to Africa, a long distance travel with ICARUS". ERVR 2019
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Karsten Klein, Michael Aichem, Björn Sommer, Stefan Erk, Ying Zhang, Falk Schreiber:
TEAMwISE: Synchronised Immersive Environments for Exploration and Analysis of Movement Data. VINCI 2019: 9:1-9:5
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Karsten Klein, Sabrina Jaeger, Jörg Melzheimer, Bettina Wachter, Heribert Hofer, Artur Baltabayev, Falk Schreiber:
Visual Analytics for Cheetah Behaviour Analysis. VINCI 2019: 16:1-16:8
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Carla Binucci, Ulrik Brandes, Tim Dwyer, Martin Gronemann, Reinhard von Hanxleden, Marc J. van Kreveld, Petra Mutzel, Marcus Schaefer, Falk Schreiber, Bettina Speckmann:
10 Reasons to Get Interested in Graph Drawing. Computing and Software Science 2019: 85-104
2018
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Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017. J. Integr. Bioinform. 15(1) (2018)
[j57]
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Niklas Biere, Mehmood Ghaffar, Anja Doebbe, Daniel Jäger, Nils Rothe, Benjamin M. Friedrich, Ralf Hofestädt, Falk Schreiber, Olaf Kruse, Björn Sommer:
Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell. J. Integr. Bioinform. 15(2) (2018)
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Matthias Klapperstück, Tobias Czauderna, Cagatay Goncu, Jaroslaw Glowacki, Tim Dwyer, Falk Schreiber, Kim Marriott:
ContextuWall: Multi-site collaboration using display walls. J. Vis. Lang. Comput. 46: 35-42 (2018)
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Artur Baltabayev, Alexej Gluschkow, Johannes Blank, Gero Birkhölzer, Jean Büsche, Martin Kern, Fabian Klopfer, Lisa-Maria Mayer, Gabriel Scheibler, Karsten Klein, Falk Schreiber, Björn Sommer:
Virtual Reality for Sensor Data Visualization and Analysis. ERVR 2018
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Falk Schreiber:
Immersive Analytics - Methodology and Applications in the Life Sciences. VISIGRAPP 2018: 9
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Yunlong Wang, Corinna Breitinger, Björn Sommer, Falk Schreiber, Harald Reiterer:
Comparing Sequential and Temporal Patterns from Human Mobility Data for Next-Place Prediction. UMAP (Adjunct Publication) 2018: 157-164
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Mehmood Ghaffar, Niklas Biere, Daniel Jäger, Karsten Klein, Falk Schreiber, Olaf Kruse, Björn Sommer:
3D Modelling and Visualisation of Heterogeneous Cell Membranes in Blender. VINCI 2018: 64-71
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Tim Dwyer, Kim Marriott, Tobias Isenberg, Karsten Klein, Nathalie Henry Riche, Falk Schreiber, Wolfgang Stuerzlinger, Bruce H. Thomas:
Immersive Analytics: An Introduction. Immersive Analytics 2018: 1-23
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Tobias Czauderna, Jason Haga, Jinman Kim, Matthias Klapperstück, Karsten Klein, Torsten W. Kuhlen, Steffen Oeltze-Jafra, Björn Sommer, Falk Schreiber:
Immersive Analytics Applications in Life and Health Sciences. Immersive Analytics 2018: 289-330
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Kim Marriott, Falk Schreiber, Tim Dwyer, Karsten Klein, Nathalie Henry Riche, Takayuki Itoh, Wolfgang Stuerzlinger, Bruce H. Thomas:
Immersive Analytics. Lecture Notes in Computer Science 11190, Springer 2018, ISBN 978-3-030-01387-5 [contents]
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Yunlong Wang, Björn Sommer, Falk Schreiber, Harald Reiterer:
Clustering with Temporal Constraints on Spatio-Temporal Data of Human Mobility. CoRR abs/1807.00546 (2018)
2017
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Björn Sommer, Falk Schreiber:
Integration and virtual reality exploration of biomedical data with CmPI and VANTED. it Inf. Technol. 59(4): 181 (2017)
[j54]
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Ralf Hofestädt, Falk Schreiber, Björn Sommer, Jens Allmer:
Computational miRNomics - Integrative Approaches. J. Integr. Bioinform. 14(1) (2017)
[c41]
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Björn Sommer, David G. Barnes, Sarah E. Boyd, Tom Chandler, Maxime Cordeil, Tobias Czauderna, Matthias Klapperstück, Karsten Klein, Toàn D. Nguyên, Hieu T. Nim, Kingsley Stephens, Dany Vohl, Stephen Jia Wang, Elliott Wilson, Yan Zhu, Jian Li, Jon McCormack, Kim Marriott, Falk Schreiber:
3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz. SD&A 2017: 179-187
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Falk Schreiber:
Analyse und Aufzeigen von Zusammenhängen. GI-Jahrestagung 2017: 597
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Hieu T. Nim, Björn Sommer, Karsten Klein, Andrea Flack, Kamran Safi, Máté Nagy, Wolfgang Fiedler, Martin Wikelski, Falk Schreiber:
Design Considerations for Immersive Analytics of Bird Movements Obtained by Miniaturised GPS Sensors. VCBM 2017: 27-31
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Andreas Kerren, Kostiantyn Kucher, Yuan-Fang Li, Falk Schreiber:
MDS-based Visual Survey of Biological Data Visualization Techniques. EuroVis (Posters) 2017: 85-87
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Chris J. Myers, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, David P. Nickerson, Falk Schreiber, Dagmar Waltemath:
A brief history of COMBINE. WSC 2017: 884-895
2016
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Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016. J. Integr. Bioinform. 13(3) (2016)
[j52]
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Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber:
Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans. Biomed. Eng. 63(10): 2007-2014 (2016)
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Matthias Klapperstück, Tobias Czauderna, Cagatay Goncu, Jaroslaw Glowacki, Tim Dwyer, Falk Schreiber, Kim Marriott:
ContextuWall: Peer Collaboration Using (Large) Displays. BDVA 2016: 1-8
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Hieu T. Nim, Mengyang Wang, Yujie Zhu, Björn Sommer, Falk Schreiber, Sarah E. Boyd, Stephen Jia Wang:
Communicating the Effect of Human Behaviour on the Great Barrier Reef via Mixed Reality Visualisation. BDVA 2016: 1-6
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Björn Sommer, Andreas Hamacher, Owen Kaluza, Tobias Czauderna, Matthias Klapperstück, Niklas Biere, Marco Civico, Bruce H. Thomas, David G. Barnes, Falk Schreiber:
Stereoscopic Space Map - Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments. SD&A 2016: 1-9
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Ina Koch, Falk Schreiber:
Introduction. Modeling in Systems Biology, The Petri Net Approach 2016: 3-18
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Takayuki Itoh, Kim Marriott, Falk Schreiber, Uwe Wössner:
Immersive Analytics: A new multidisciplinary initiative to explore future interaction technologies for data analytics (NII Shonan Meeting 2016-2). NII Shonan Meet. Rep. 2016 (2016)
2015
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Syed Murtuza Baker, C. Hart Poskar, Falk Schreiber, Björn H. Junker:
A unified framework for estimating parameters of kinetic biological models. BMC Bioinform. 16: 104:1-104:21 (2015)
[j50]
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Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin, Alice Villéger:
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 . J. Integr. Bioinform. 12(2) (2015)
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Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Stephan Weise:
Specifications of Standards in Systems and Synthetic Biology. J. Integr. Bioinform. 12(2) (2015)
[j48]
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Anatoly A. Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger:
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2. J. Integr. Bioinform. 12(2) (2015)
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Björn Sommer, Stephen Jia Wang, Lifeng Xu, Ming Chen, Falk Schreiber:
Hybrid-Dimensional Visualization and Interaction - Integrating 2D and 3D Visualization with Semi-Immersive Navigation Techniques. BDVA 2015: 65-72
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Tom Chandler, Maxime Cordeil, Tobias Czauderna, Tim Dwyer, Jaroslaw Glowacki, Cagatay Goncu, Matthias Klapperstück, Karsten Klein, Kim Marriott, Falk Schreiber, Elliott Wilson:
Immersive Analytics. BDVA 2015: 73-80
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Hieu T. Nim, Terence Done, Falk Schreiber, Sarah E. Boyd:
Interactive Geolocational and Coral Compositional Visualisation of Great Barrier Reef Heat Stress Data. BDVA 2015: 81-87
2014
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Andreas Kerren, Falk Schreiber:
Why Integrate InfoVis and SciVis?: An Example from Systems Biology. IEEE Computer Graphics and Applications 34(6): 69-73 (2014)
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Ina Koch, Wolfgang Reisig, Falk Schreiber:
Petri Nets in the Biosciences. it Inf. Technol. 56(2): 43-45 (2014)
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Matthias Klapperstück, Falk Schreiber:
BioNetLink - An Architecture for Working with Network Data. J. Integr. Bioinform. 11(2) (2014)
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Andreas Kerren, Falk Schreiber:
Network Visualization for Integrative Bioinformatics. Approaches in Integrative Bioinformatics 2014: 173-202
2013
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Syed Murtuza Baker, C. Hart Poskar, Falk Schreiber, Björn H. Junker:
An improved constraint filtering technique for inferring hidden states and parameters of a biological model. Bioinform. 29(8): 1052-1059 (2013)
[j43]
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Tobias Czauderna, Michael Wybrow, Kim Marriott, Falk Schreiber:
Conversion of KEGG metabolic pathways to SBGN maps including automatic layout. BMC Bioinform. 14: 250 (2013)
[j42]
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Torsten Vogt, Tobias Czauderna, Falk Schreiber:
Translation of SBGN maps: Process Description to Activity Flow. BMC Syst. Biol. 7: 115 (2013)
[j41]
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Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère:
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst. Biol. 7: 116 (2013)
[j40]
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Ilir Jusufi, Andreas Kerren, Falk Schreiber:
Exploring biological data: Mappings between ontology- and cluster-based representations. Inf. Vis. 12(3-4): 291-307 (2013)
[j39]
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Ralf Hofestädt, Benjamin Kormeier, Matthias Lange, Falk Schreiber, Björn Sommer, Stephan Weise:
Editorial. J. Integr. Bioinform. 10(1) (2013)
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Oliver Kohlbacher, Falk Schreiber, Matthew O. Ward:
Multivariate Networks in the Life Sciences. Multivariate Network Visualization 2013: 61-73
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Falk Schreiber, Andreas Kerren, Katy Börner, Hans Hagen, Dirk Zeckzer:
Heterogeneous Networks on Multiple Levels. Multivariate Network Visualization 2013: 175-206
[c28]
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Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Matthias Lange, Martin Mascher, Stephan Weise, Uwe Scholz, Falk Schreiber:
OPTIMAS-DW, MetaCrop and VANTED: A Case Study for Data Integration, Curation and Visualisation in Life Sciences. GI-Jahrestagung 2013: 1834-1840
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Christian Bachmaier, Ulrik Brandes, Falk Schreiber:
Biological Networks. Handbook of Graph Drawing and Visualization 2013: 621-651
2012
[j38]
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  - journals/bioinformatics/GrasslerKS12
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Johannes Gräßler, Dirk Koschützki, Falk Schreiber:
CentiLib: comprehensive analysis and exploration of network centralities. Bioinform. 28(8): 1178-1179 (2012)
[j37]
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Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber:
Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinform. 28(15): 2016-2021 (2012)
[j36]
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Hendrik Rohn, Anja Hartmann, Astrid Junker, Björn H. Junker, Falk Schreiber:
FluxMap: A VANTED add-on for the visual exploration of flux distributions in biological networks. BMC Syst. Biol. 6: 33 (2012)
[j35]
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Hendrik Rohn, Astrid Junker, Anja Hartmann, Eva Grafahrend-Belau, Hendrik Treutler, Matthias Klapperstück, Tobias Czauderna, Christian Klukas, Falk Schreiber:
VANTED v2: a framework for systems biology applications. BMC Syst. Biol. 6: 139 (2012)
[j34]
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Ilir Jusufi, Christian Klukas, Andreas Kerren, Falk Schreiber:
Guiding the interactive exploration of metabolic pathway interconnections. Inf. Vis. 11(2): 136-150 (2012)
[j33]
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Katrin Lotz, Falk Schreiber, Röbbe Wünschiers:
Nutrilyzer: A Tool for Deciphering Atomic Stoichiometry of Differentially Expressed Paralogous Proteins. J. Integr. Bioinform. 9(2) (2012)
[j32]
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Hendrik Mehlhorn, Matthias Lange, Uwe Scholz, Falk Schreiber:
IDPredictor: predict database links in biomedical database. J. Integr. Bioinform. 9(2) (2012)
[j31]
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Falk Schreiber, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Astrid Junker, Björn H. Junker, Matthias Klapperstück, Uwe Scholz, Stephan Weise:
MetaCrop 2.0: managing and exploring information about crop plant metabolism. Nucleic Acids Res. 40(Database-Issue): 1173-1177 (2012)
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Ilir Jusufi, Andreas Kerren, Vladyslav Aleksakhin, Falk Schreiber:
Visualization of mappings between the gene ontology and cluster trees. Visualization and Data Analysis 2012: 82940N
[c26]
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Andreas Kerren, Falk Schreiber:
Toward the role of interaction in visual analytics. WSC 2012: 420:1-420:13
2011
[j30]
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Hendrik Rohn, Christian Klukas, Falk Schreiber:
Creating views on integrated multidomain data. Bioinform. 27(13): 1839-1845 (2011)
[j29]
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Anja Hartmann, Tobias Czauderna, Roberto Hoffmann, Nils Stein, Falk Schreiber:
HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping. BMC Bioinform. 12: 148 (2011)
[j28]
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Stephan Weise, Jinbo Chen, Björn H. Junker, Matthias Klapperstück, Matthias Lange, Falk Schreiber, Uwe Scholz:
Das Informationssystem MetaCrop zur Unterstützung systembiologischer Forschung an Kulturpflanzen. it Inf. Technol. 53(5): 234-240 (2011)
[j27]
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Hendrik Mehlhorn, Falk Schreiber:
DBE2 - Management of experimental data for the VANTED system. J. Integr. Bioinform. 8(2) (2011)
[c25]
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Hendrik Mehlhorn, Falk Schreiber:
Integration and exploration of biological networks. GI-Jahrestagung 2011: 160
[c24]
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Hendrik Rohn, Christian Klukas, Falk Schreiber:
Visual Analytics of Multimodal Biological Data. IMAGAPP/IVAPP 2011: 256-261
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Ina Koch, Wolfgang Reisig, Falk Schreiber:
Modeling in Systems Biology, The Petri Net Approach. Computational Biology 16, Springer 2011, ISBN 978-1-84996-473-9 [contents]
2010
[j26]
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Tobias Czauderna, Christian Klukas, Falk Schreiber:
Editing, validating and translating of SBGN maps. Bioinform. 26(18): 2340-2341 (2010)
[j25]
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Michael Scharfe, Rainer Pielot, Falk Schreiber:
Fast multi-core based multimodal registration of 2D cross-sections and 3D datasets. BMC Bioinform. 11: 20 (2010)
[j24]
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Christian Klukas, Falk Schreiber:
Integration of -omics data and networks for biomedical research with VANTED. J. Integr. Bioinform. 7(2) (2010)
[j23]
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Klaus Hippe, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Uwe Scholz, Falk Schreiber, Stephan Weise:
Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches. J. Integr. Bioinform. 7(3) (2010)

2000 – 2009

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2009
[j22]
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Eva Grafahrend-Belau, Christian Klukas, Björn H. Junker, Falk Schreiber:
FBA-SimVis: interactive visualization of constraint-based metabolic models. Bioinform. 25(20): 2755-2757 (2009)
[j21]
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Zahra Razaghi Moghadam Kashani, Hayedeh Ahrabian, Elahe Elahi, Abbas Nowzari-Dalini, Elnaz Saberi Ansari, Sahar Asadi, Shahin Mohammadi, Falk Schreiber, Ali Masoudi-Nejad:
Kavosh: a new algorithm for finding network motifs. BMC Bioinform. 10: 318 (2009)
[j20]
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Falk Schreiber, Tim Dwyer, Kim Marriott, Michael Wybrow:
A generic algorithm for layout of biological networks. BMC Bioinform. 10: 375 (2009)
[j19]
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Falk Schreiber:
Analyse und Visualisierung biologischer Netzwerke. Inform. Spektrum 32(4): 301-309 (2009)
[c23]
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Stephan Weise, Christian Colmsee, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Matthias Lange, Uwe Scholz, Falk Schreiber:
An Integration and Analysis Pipeline for Systems Biology in Crop Plant Metabolism. DILS 2009: 196-203
[c22]
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  - conf/gcb/FesterSS09
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Thilo Fester, Falk Schreiber, Marc Strickert:
CUDA-based Multi-core Implementation of MDS-based Bioinformatics Algorithms. GCB 2009: 67-79
[c21]
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Hendrik Rohn, Christian Klukas, Falk Schreiber:
Integration and Visualisation of Multimodal Biological Data. GCB 2009: 105-115
[c20]
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Mario Albrecht, Andreas Kerren, Karsten Klein, Oliver Kohlbacher, Petra Mutzel, Wolfgang Paul, Falk Schreiber, Michael Wybrow:
On Open Problems in Biological Network Visualization. GD 2009: 256-267
[c19]
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Stephan Weise, Christian Colmsee, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Matthias Lange, Uwe Scholz, Falk Schreiber:
Datenaustausch und Datenintegration zur Modellierung und Analyse metabolischer Netzwerke am Beispiel von Kulturpflanzen. GI Jahrestagung 2009: 693-697
[c18]
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David Cho Yau Fung, Seok-Hee Hong, Dirk Koschützki, Falk Schreiber, Kai Xu:
Visual Analysis of Overlapping Biological Networks. IV 2009: 337-342
[c17]
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Rainer Pielot, Udo Seiffert, Bertram Manz, Diana Weier, Frank Volke, Falk Schreiber, Winfriede Weschke:
Multimodal Registration of NMR-volumes and Histological Cross-sections of Barley Grains on the Cell Broadband Engine Processor. VISAPP (1) 2009: 241-244
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Ivo Grosse, Steffen Neumann, Stefan Posch, Falk Schreiber, Peter F. Stadler:
German Conference on Bioinformatics 2009, 28th to 30th September 2009, Martin Luther University Halle-Wittenberg, Germany. LNI P-157, GI 2009, ISBN 978-3-88579-251-2 [contents]
2008
[j18]
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Eva Grafahrend-Belau, Falk Schreiber, Monika Heiner, Andrea Sackmann, Björn H. Junker, Stefanie Grunwald, Astrid Speer, Katja Winder, Ina Koch:
Modularization of biochemical networks based on classification of Petri net t-invariants. BMC Bioinform. 9 (2008)
[j17]
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David Cho Yau Fung, Seok-Hee Hong, Dirk Koschützki, Falk Schreiber, Kai Xu:
2.5D Visualisation of Overlapping Biological Networks. J. Integr. Bioinform. 5(1) (2008)
[j16]
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Eva Grafahrend-Belau, Stephan Weise, Dirk Koschützki, Uwe Scholz, Björn H. Junker, Falk Schreiber:
MetaCrop: a detailed database of crop plant metabolism. Nucleic Acids Res. 36(Database-Issue): 954-958 (2008)
[j15]
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Tim Dwyer, Kim Marriott, Falk Schreiber, Peter J. Stuckey, Michael Woodward, Michael Wybrow:
Exploration of Networks using overview+detail with Constraint-based cooperative layout. IEEE Trans. Vis. Comput. Graph. 14(6): 1293-1300 (2008)
2007
[j14]
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Christian Klukas, Falk Schreiber:
Dynamic exploration and editing of KEGG pathway diagrams. Bioinform. 23(3): 344-350 (2007)
[j13]
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Michael Telgkamp, Dirk Koschützki, Henning Schwöbbermeyer, Falk Schreiber:
Community-based Linking of Biological Network Resources: Databases, Formats and Tools. J. Integr. Bioinform. 4(3) (2007)
2006
[j12]
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Björn H. Junker, Christian Klukas, Falk Schreiber:
VANTED: A system for advanced data analysis and visualization in the context of biological networks. BMC Bioinform. 7: 109 (2006)
[j11]
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Björn H. Junker, Dirk Koschützki, Falk Schreiber:
Exploration of biological network centralities with CentiBiN. BMC Bioinform. 7: 219 (2006)
[j10]
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Stephan Weise, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz, Falk Schreiber, Björn H. Junker:
Meta-All: a system for managing metabolic pathway information. BMC Bioinform. 7: 465 (2006)
[j9]
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Björn H. Junker, Dirk Koschützki, Falk Schreiber:
Kinetic Modelling with the Systems Biology Modelling Environment SyBME. J. Integr. Bioinform. 3(1) (2006)
[c16]
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Christian Klukas, Falk Schreiber, Henning Schwöbbermeyer:
Coordinated perspectives and enhanced force-directed layout for the analysis of network motifs. APVIS 2006: 39-48
[c15]
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Tim Dwyer, Seok-Hee Hong, Dirk Koschützki, Falk Schreiber, Kai Xu:
Visual analysis of network centralities. APVIS 2006: 189-197
2005
[j8]
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Falk Schreiber, Henning Schwöbbermeyer:
MAVisto: a tool for the exploration of network motifs. Bioinform. 21(17): 3572-3574 (2005)
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Christian Klukas, Dirk Koschützki, Falk Schreiber:
Graph Pattern Analysis with PatternGravisto. J. Graph Algorithms Appl. 9(1): 19-29 (2005)
[j6]
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Falk Schreiber, Henning Schwöbbermeyer:
Frequency Concepts and Pattern Detection for the Analysis of Motifs in Networks. Trans. Comp. Sys. Biology 3: 89-104 (2005)
2004
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Ljudmilla Borisjuk, Mohammad-Reza Hajirezaei, Christian Klukas, Hardy Rolletschek, Falk Schreiber:
Integrating data from biological experiments into metabolic networks with the DBE information system. Silico Biol. 5(2): 93-102 (2004)
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Ulrik Brandes, Tim Dwyer, Falk Schreiber:
Visual Understanding of Metabolic Pathways Across Organisms Using Layout in Two and a Half Dimensions. J. Integr. Bioinform. 1(1) (2004)
[c14]
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Carsten Friedrich, Falk Schreiber:
Flexible Layering in Hierarchical Drawings with Nodes of Arbitrary Size. ACSC 2004: 369-376
[c13]
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Tim Dwyer, Hardy Rolletschek, Falk Schreiber:
Representing Experimental Biological Data in Metabolic Networks. APBC 2004: 13-20
[c12]
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Tim Dwyer, Falk Schreiber:
Optimal Leaf Ordering for Two and a Half Dimensional Phylogenetic Tree Visualisation. InVis.au 2004: 109-115
[c11]
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Dirk Koschützki, Falk Schreiber:
Comparison of Centralities for Biological Networks. German Conference on Bioinformatics 2004: 199-206
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Ulrik Brandes, Tim Dwyer, Falk Schreiber:
Visual Triangulation of Network-Based Phylogenetic Trees. VisSym 2004: 75-83
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Franz J. Brandenburg, Michael Forster, Andreas Pick, Marcus Raitner, Falk Schreiber:
BioPath - Exploration and Visualization of Biochemical Pathways. Graph Drawing Software 2004: 215-235
2003
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Falk Schreiber:
Visual comparison of metabolic pathways. J. Vis. Lang. Comput. 14(4): 327-340 (2003)
[c9]
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Falk Schreiber:
Comparison of Metabolic Pathways using Constraint Graph Drawing. APBC 2003: 105-110
[c8]
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Ulrik Brandes, Tim Dwyer, Falk Schreiber:
Visualizing Related Metabolic Pathways in Two and a Half Dimensions. GD 2003: 111-122
2002
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Falk Schreiber:
High quality visualization of biochemical pathways in BioPath. Silico Biol. 2(2): 59-73 (2002)
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Michael Forster, Andreas Pick, Marcus Raitner, Falk Schreiber, Franz-Josef Brandenburg:
The system architecture of the BioPath system. Silico Biol. 2(3): 415-426 (2002)
2001
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Falk Schreiber:
Visualisierung biochemischer Reaktionsnetze. Passau University, Germany, 2001
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Franz-Josef Brandenburg, Michael Forster, Andreas Pick, Marcus Raitner, Falk Schreiber:
BioPath Visualization of Biochemical Pathways. German Conference on Bioinformatics 2001: 11-15
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Franz-Josef Brandenburg, Michael Forster, Andreas Pick, Marcus Raitner, Falk Schreiber:
BioPath. GD 2001: 455-456

1990 – 1999

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1999
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Carl-Christian Kanne, Falk Schreiber, Dietrich Trümbach:
Interactive Biochemical Pathways. German Conference on Bioinformatics 1999: 204-205
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Franz-Josef Brandenburg, Michael Jünger, Joe Marks, Petra Mutzel, Falk Schreiber:
Graph-Drawing Contest Report. GD 1999: 400-409
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Carl-Christian Kanne, Falk Schreiber, Dietrich Trümbach:
Electronic Biochemical Pathways. GD 1999: 418-419
1998
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Falk Schreiber, Konstantin Skodinis:
NP-Completeness of Some Tree-Clustering Problems. GD 1998: 288-301
1997
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Michael von der Beeck, Volker Braun, Andreas Claßen, Achim Dannecker, Carsten Friedrich, Dirk Koschützki, Tiziana Margaria, Falk Schreiber, Bernhard Steffen:
Graphs in METAFrame: The Unifying Power of Polymorphism. TACAS 1997: 112-129

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