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ORCID17th BIBE 2017: Washington, DC, USA
- 17th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2017, Washington, DC, USA, October 23-25, 2017. IEEE Computer Society 2017, ISBN 978-1-5386-1324-5
Neuro-Brain Imaging
- Spyridon Manganas, Nikolaos G. Bourbakis:
A Comparative Survey on Simultaneous EEG-fMRI Methodologies. 1-8 - Lina Chato, Shahram Latifi:
Machine Learning and Deep Learning Techniques to Predict Overall Survival of Brain Tumor Patients using MRI Images. 9-14 - Chunfei Li, Chen Fang
, Malek Adjouadi, Mercedes Cabrerizo, Armando Barreto, Jean Andrian, Ranjan Duara, David A. Loewenstein:
A Neuroimaging Feature Extraction Model for Imaging Genetics with Application to Alzheimer's Disease. 15-20 - Cristina Marie Morales Mojica, Nikhil V. Navkar, Nikolaos V. Tsekos, Dimitrios Tsagkaris, Andrew G. Webb, Theodosios Birbilis, Ioannis Seimenis:
Holographic Interface for three-dimensional Visualization of MRI on HoloLens: A Prototype Platform for MRI Guided Neurosurgeries. 21-27
Drugs and Genomics
- Rebekah K. Loving, Michael R. Peterson:
Investigating the Effects of Rare Variants in Concurrent Drug Usage: An Association Analysis Approach. 28-34 - Walter Blair, Leonardo de Melo Joao, Larry Davis, Paul Anderson:
Streamlining the Genomics Processing Pipeline via Named Pipes and Persistent Spark Satasets. 35-38 - Hima Bindu Yalamanchili, Soon Jye Kho, Michael L. Raymer:
Latent Dirichlet Allocation for Classification using Gene Expression Data. 39-44 - Asai Asaithambi, Swapnoneel Roy, Sandhya Turlapaty:
Implementation and Performance Comparison of Some Heuristic Algorithms for Block Sorting. 45-50
Cells Detection and Processing
- Runkai Zhu, Dong Sui, Hong Qin, Aimin Hao:
An Extended Type Cell Detection and Counting Method based on FCN. 51-56 - Mohammad Daneshzand, Sabreen Ayad Ibrahim, Miad Faezipour, Buket D. Barkana:
Desynchronization and Energy Efficiency of Gaussian Neurostimulation on Different Sites of the Basal Ganglia. 57-62 - Kamyar Esmaeili Pourfarhangi, Mohammad Sahlabadi:
The Size of Red Blood Cells Regulates the Extent of Pulmonary Capillary Diameter Effect on Pulmonary Gas Exchange Process. 63-68 - Paulo Wander Barbosa, Adriano M. de A. Cirtes, Lucia Catabriga:
Studies of a Hybrid and Multiscale Tumor Growth Model via Isogeometric Analysis using PetIGA. 69-74
Brain Networks and Interfacing
- Arash Rahnama, Abdullah Alchihabi, Vijay Gupta, Panos J. Antsaklis, Fatos T. Yarman-Vural:
Encoding Multi-Resolution Brain Networks Using Unsupervised Deep Learning. 75-80 - Pablo Arnau-González, Stamos Katsigiannis, Naeem Ramzan, Debbie Tolson, Miguel Arevalillo-Herráez:
ES1D: A Deep Network for EEG-Based Subject Identification. 81-85 - George Panagopoulos:
Multi-Task Learning for Commercial Brain Computer Interfaces. 86-93 - Kanishka De, Rehan Ahmed, Cheng Hao, Chris Hutchens:
A Low Power Digitally Assisted Analog Front End for Neural Interface with Optical Reception. 94-100
RNA_DNA
- Kristyna Kupkova, Karel Sedlár, Ivo Provazník:
Reference-free Identification of Phage DNA Using Signal Processing on Nanopore Data. 101-105 - Jing-Doo Wang, Yi-Chun Wang, Rouh-Mei Hu, Jeffrey J. P. Tsai:
Extracting the Co-occurrences of DNA Maximal Repeats in both Human and Viruses. 106-111 - Wallison William Guimarães, Cristiano Lacerda Nunes Pinto, Cristiane Neri Nobre, Luis E. Zárate:
The Relevance of Upstream and Downstream Regions of mRNA in the Prediction of Translation Initiation Site of the Protein. 112-118 - Nauman Ahmed, Koen Bertels, Zaid Al-Ars:
Predictive Genome Analysis Using Partial DNA Sequencing Data. 119-124
Tissue, Cells and Bacteria
- Lin Li, Juan Shan:
Automated Microaneurysm Detection in Fundus Images through Region Growing. 125-130 - Y-h. Taguchi:
One-class Differential Expression Analysis using Tensor Decomposition-based Unsupervised Feature Extraction Applied to Integrated Analysis of Multiple Omics Data from 26 Lung Adenocarcinoma Cell Lines. 131-138 - Yuan-Hsiang Chang, Hideo Yokota, Kuniya Abe, Chun-Chi Chen, Ming-Dar Tsai:
3D Segmentation, Visualization and Quantitative Analysis of Differentiation Activity for Mouse Embryonic Stem Cells using Time-Lapse Fluorescence Microscopy Images. 139-144 - Jongseo Lee, Yoonsu Shin, Songkuk Kim, Kyoohyoung Rho, Kyu H. Park:
SVM Classification Model of Similar Bacteria Species using Negative Marker: Based on Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry. 145-150
Cognitive Modelling
- Masaki Stanley Fujimoto, Paul M. Bodily, Cole A. Lyman, Andrew J. Jacobsen, Quinn Snell, Mark J. Clement:
Modeling Global and local Codon Bias with Deep Language Models. 151-156 - Rogrio Gabriel, Marilda Machado Spindola, Alexandre Mesquita, Angelo Zerbetto Neto:
Identification of ADHD Cognitive Pattern Disturbances Using EEG and Wavelets Analysis. 157-162 - Akm Sabbir, Antonio Jimeno-Yepes, Ramakanth Kavuluru:
Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings. 163-170 - Kazuya Onishi, Hiroshi Hagiwara:
Effects of Open Versus Closed Eyes on Physiological Conditions During a Working Memory Task. 171-174
Bio-Sequences Analysis
- Eloi Araujo, Marco Aurelio Stefanes, Valter de O. Ferlete, Luiz C. S. Rozante:
Multiple Sequence Alignment using Hybrid Parallel Computing. 175-180 - Thi Thanh Thuy Phan, Takenao Ohkawa, Akihiro Yamamoto:
Protein-Protein Interaction Extraction from Text by Selecting Linguistic Features. 181-187 - Hamid Mushtaq, Nauman Ahmed, Zaid Al-Ars:
Streaming Distributed DNA Sequence Alignment Using Apache Spark. 188-193 - Majdi Maabreh, Ajay Gupta, Izzat Alsmadi:
Towards Centralized MS/MS Spectra Preprocessing: An Empirical Evaluation of Peptides Search Engines using Ground Truth Datasets. 194-199
Biological Networks I
- Hooman Sedghamiz, Wenxiang Chen, Mark Rice, L. Darrell Whitley, Gordon Broderick:
Selecting Optimal Models Based on Efficiency and Robustness in Multi-valued Biological Networks. 200-205 - Yoonsu Shin, Jongseo Lee, Songkuk Kim:
Validity of Biosignal Processing System based on Haar Transform in IoT Application. 206-211 - M. Stanley Fujimoto, Cole A. Lyman, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement:
Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction. 212-216 - Vishwa Nellore, Chris Dwyer:
Modeling and Experimental Validation of Large Scale Fluorescence Sensor Networks. 217-222
Bio-Imaging I
- Anne-Cecile Lesage, Marc Garbey:
Augmenting a Wireless Portable Ultrasound Imaging with a real-time Hemodynamics Solver. 223-229 - Nefeli Lamprinou, Emmanouil Z. Psarakis:
Pixel-ECC Based Laparoscopic Image Alignment In Presence of Large Untextured Regions. 230-235 - Nikolaos Giannakeas, Maria Tsiplakidou, Markos G. Tsipouras, Pinelopi Manousou, Roberta Forlano, Alexandros T. Tzallas:
Image Enhancement of Routine Biopsies: A Case for Liver Tissue Detection. 236-240 - XueYan Mei, Xiaomeng Dong, Timothy Deyer, Jingyi Zeng, Theodore B. Trafalis, Yan Fang:
Thyroid Nodule Benignty Prediction by Deep Feature Extraction. 241-245
Genomes and Bacteria
- Kamil Khanipov, Levent Albayrak, George Golovko, Maria Pimenova, Ioannis T. Pavlidis, Yuriy Fofanov, Khanipov K.:
Novel Computational Approach for Identification of Highly Mutated Integrated HIV Genomes. 246-248 - Levent L. Albayrak, Kamil Khanipov, Mark Rojas, George Golovko, Maria Pimenova, Michael Kosoy, Yuriy Fofanov:
Exploration of Natural Alignment Scoring Rules and Clustering Thresholds for Bacterial Core/Pan Genome Analysis. 249-254 - Tamanna Motahar, Rummana Rahman, Rafiya Hossain:
A Simulation Study on Light Scattering Effect on Water-borne Bacteriophage Virus Using Mie Analysis. 255-259 - Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement:
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. 260-265
Disease Diagnosis
- Nauman Razzaq, Shafa-At Ali Sheikh, Tahir Zaidi, Imran Akhtar, Syed Hassaan Ahmed:
Automated Differentiation between Normal Sinus Rhythm, Atrial Tachycardia, Atrial Flutter and Atrial Fibrillation during Electrophysiology. 266-272 - Georgios I. Gogolos, Eleni I. Georga, Evangelos C. Rizos, Dimitrios I. Fotiadis:
An mhealth Platform to Evaluate Glycaemic Variability in Type 1 Diabetes. 273-278 - Chen Fang, Chunfei Li, Mercedes Cabrerizo, Armando Barreto, Jean Andrian, David A. Loewenstein, Ranjan Duara, Malek Adjouadi:
A Novel Gaussian Discriminant Analysis-based Computer Aided Diagnosis System for Screening Different Stages of Alzheimer's Disease. 279-284 - Evanthia E. Tripoliti, Georgia S. Karanasiou, Fanis G. Kalatzis, Yorgos Goletsis, Aris Bechlioulis, Silvia Ghimenti, Tommaso Lomonaco, Francesca G. Bellagambi, Roger Fuoco, Mario Marzilli, Maria Chiara Scali, Katerina K. Naka, Abdelhamid Errachid, Dimitrios I. Fotiadis:
Predicting Heart Failure Patient Events by Exploiting Saliva and Breath Biomarkers Information. 285-290 - W. H. S. D. Gunarathne, K. D. M. Perera, K. A. D. C. P. Kahandawaarachchi:
Performance Evaluation on Machine Learning Classification Techniques for Disease Classification and Forecasting through Data Analytics for Chronic Kidney Disease (CKD). 291-296
Bio-Imaging II
- Junedh M. Amrute, Lambros S. Athanasiou, Farhad Rikhtegar, Jose M. de la Torre Hernandez, Tamara Garcia Camarero, Elazer R. Edelman:
Automated Segmentation of Bioresorbable Vascular Scaffold Struts in Intracoronary Optical Coherence Tomography Images. 297-302 - Gregory Yauney, Keith Angelino, David Edlund, Pratik Shah:
Convolutional Neural Network for Combined Classification of Fluorescent Biomarkers and Expert Annotations using White Light Images. 303-309 - (Withdrawn) Performance Comparison of HSV and L*a*b* Spaces in Thought Form Image Analysis. 310-316
- Muhammed Sayed Hammad, Ayman Mahmoud Khalifa, Walid Al-Atabany, El-Sayed H. Ibrahim:
The Influence of the Analysis Technique on Myocardial T2 Estimation Using Cardiac Magnetic Resonance Imaging (CMR). 317-320 - Nischal Koirala, Randolph M. Setser, Jennifer Bullen, Gordon McLennan:
Determination of Dialysis Access Patency Using 2D Angiographic Images. 321-326 - Keith Angelino, David Edlund, Gaurav Bhatia, Sharon Wu, Pratik Shah:
Near-Infrared Transillumination Guides Administration of Dental 2D Radiography and CBCT Imaging. 327-333
Protein Structures
- Anna N. Ntagiou, Markos G. Tsipouras, Nikolaos Giannakeas, Alexandros T. Tzallas:
Protein Structure Recognition by Means of Sequential Pattern Mining. 334-339 - Majdi Maabreh, Basheer Qolomany, Ajay Gupta, James R. Springstead:
Optimizing Protein Search Engines using Particle Swarm Optimization. 340-345 - Christine Kehyayan, Gregory Butler:
SynAPhy and SynAVal: Mining a Synteny-Similarity Graph to Resolve Orthology of Proteins in Fungal Genomes. 346-351 - Susana Medina G., Alexandre Victor Fassio, Sabrina de Azevedo Silveira, Carlos Henrique da Silveira, Raquel Cardoso de Melo Minardi:
CALI: A Novel Visual Model for Frequent Pattern Mining in Protein-Ligand Graphs. 352-358
Bio-Sensing: Frames and Tools I
- Guillaume Joerger, Albert Huang, Barbara Bass, Brian Dunkin, Marc Garbey:
Global Laparoscopy Positioning System with a Smart Trocar. 359-366 - Hatem Loukil, Mohamed Tmar, Mahdi Louati, Afif Masmoudi, Faïez Gargouri:
Towards Probabilistic Simulation of Tandem Mass Spectrometry Fragmentation Applied for Peptide Identification. 367-372 - Mahmut Unan, Ahmet Eren Sonmez:
Simulation of Dual Modality Probe. 373-378 - Kento Fujimori, Ning Li, Yasuhiro Sugimoto:
Sensitivity Comparison Between Reflection and Transmission Coefficient by Free Space Method for Non-Invasive Glucose Monitoring Sensor. 379-382 - Ponnuraj Kirthi Priya, M. Ramasubba Reddy:
Effect of Regional Cellular Uncoupling in presence of LQTS2 in a 2D Cardiac Tissue. 383-387
Bio-Frameworks
- Qingzhen Xu, Fengyun Wang, Yongyi Gong, Zhoutao Wang:
An Edge-oriented Framework for Saliency Detection. 388-393 - Jing Yang, Yongyi Gong, Hefeng Wu, Qi Li:
A Feature Preserved Mesh Subdivision Framework for Biomedical Mesh. 394-401 - Duc Duong, Dvijesh J. Shastri, Ioannis T. Pavlidis:
Dynamic 3D Print of the Breathing Function. 402-408 - Li Li, Runtong Zhang, Jun Wang:
A Medical Diagnosis Method Based on Interval-valued Fuzzy Cognitive Map. 409-414 - Velibor Isailovic, Zarko Milosevic, Dalibor Nikolic, Igor Saveljic, Milica M. Nikolic, Marija Gacic, Bojana R. Cirkovic-Andjelkovic, Themis P. Exarchos, Dimitrios I. Fotiadis, Gualtiero Pelosi, Oberdan Parodi, Nenad Filipovic:
Coupled Computer Modeling of Atherosclerosis Development in the Coronary Arteries. 415-418
Biological Networks II
- Jiang Xie, Jiaxin Li, Dongfang Lu, Jiao Wang, Wu Zhang:
Directed Hungary Greedy Algorithm for Biomolecular Networks Alignment. 419-424 - Hoda Rajaei, Mercedes Cabrerizo, Panuwat Janwattanapong, Alberto Pinzon-Ardila, Sergio M. Gonzalez-Arias, Armando Barreto, Malek Adjouadi:
Connectivity Dynamics of Interictal Epileptiform Activity. 425-430 - Yu Geng, Zhongmeng Zhao, Xingjian Cui, Rong Zhang, Tian Zheng, Xuanping Zhang, Jiayin Wang:
An Efficient Algorithm for Identifying Genomic Structural Inversion with Wide-spectrum of Length. 431-436 - Jonathan Felipe Xavier, Catherine Putonti, Cristiane Neri Nobre:
Computational Tools for Analysis of Codon Usage in Viral Genomes and its Hosts. 437-443
Bio-Sensing: Frames and Tools II
- Nikhil V. Navkar, Leonardo Barbosa, Shidin Balakrishnan, Julien Abinahed, Walid El Ansari, Khalid Al-Rumaihi, Adham Darweesh, Abdulla Al-Ansari, Nikolaos V. Tsekos, Mansour A. Karkoub, Mohamed Gharib:
Towards a Modular, Customizable Robotic System for Needle-Based Image-Guided Interventions: Preliminary Designs, Implementation, and Testing. 444-449 - Haoran Zhao, Xin Liu, Habib M. Zaid, Dipan J. Shah, Michael J. Heffernan, Aaron T. Becker, Nikolaos V. Tsekos:
Early Studies of a Transmission Mechanism for MR-Guided Interventions. 450-456 - Vignesh Kalidas, Lakshman Tamil:
Real-time QRS detector using Stationary Wavelet Transform for Automated ECG Analysis. 457-461 - Georgia S. Karanasiou, Nikolaos S. Tachos, Antonios I. Sakellarios, Lampros K. Michalis, Claire Conway, Elazer R. Edelman, Dimitrios I. Fotiadis:
In Silico Assessment of the effects of Material on Stent Deployment. 462-467
Health Condition Analysis
- Amirabbas Rezaee, Behzad Aliahmad, Pantea Peidaee:
Analysis of Macrostructure of Sleep Apnea with Respect to age and Gender Factors on CAP Database. 468-472 - Panuwat Janwattanapong, Mercedes Cabrerizo, Chen Fang, Hoda Rajaei, Alberto Pinzon-Ardila, Sergio M. Gonzalez-Arias, Malek Adjouadi:
Classification of Interictal Epileptiform Discharges using Partial Directed Coherence. 473-478 - Bipasha Kashyap, David Szmulewicz, Pubudu N. Pathirana, Malcolm Horne, Laura Power:
Identification of Cerebellar Dysarthria with SISO Characterisation. 479-485 - Adithi D. Chakravarthy, Mahadevan Subramaniam, Parvathi Chundi, Muhammad Hassan, Quan Dong Nguyen:
Towards Automated Distortion and Health Correlation for Age-Related Macular Degeneration. 486-491
Bio-Sensing: Frames and Tools III
- Ernst Houtgast, Vlad Mihai Sima, Zaid Al-Ars:
High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL. 492-496 - Shanshan Ren, Koen Bertels, Zaid Al-Ars:
GPU-Accelerated GATK HaplotypeCaller with Load-Balanced Multi-Process Optimization. 497-502 - Dung Phan, Malcolm Horne, Pubudu N. Pathirana, Parisa Farzanehfar, Sajeewani Karunarathne:
Parkinsonian Axial Movement Capture using Wearable Sensors during the Pull Test. 503-507 - Enkhbat Batbayar, Ju Yeon Lee, Woonchul Ham, Enkhbaatar Tumenjargal, Chulgyu Song, Seungkuk Roh:
Implementation of Medical Image Reconstruction Algorithm for Photoacoustic Imaging Using k-wave Toolkit. 508-513
Healthcare
- Setu Shah, Xiao Luo:
Extracting Modifiable Risk Factors from Narrative Preventive Healthcare Guidelines for EHR Integration. 514-519 - Markos G. Tsipouras, Nikolaos Giannakeas, Stefanos Doumpoulakis, Antonis Voulgaridis, Dimitrios Kikidis, Konstantinos Votis, Dimitrios Tzovaras:
Rule Editor for ARDEN Syntax Generation towards a more Effective Self-Management of Asthma Disease Patients. 520-524 - George Spanoudakis, Panagiotis Katrakazas, Dimitris Koutsouris, Dimitrios Kikidis, Athanasios Bibas, Niels Henrik Pontoppidan:
Public Health Policy for Management of Hearing Impairments Based on Big Data Analytics: EVOTION at Genesis. 525-530 - Piyush Jain, Ankur Agarwal, Ravi S. Behara:
Care Coordination: A Systematic Review and a New Perspective. 531-536
Bio-Studies and Assessment
- An Zhao, Yinbao Chong, Hangmei Zhong, Jieshi Ma, Huan Zhang, Zhaolin Luo, Gaosen Li, Xiaomin Luo:
Clinical Assessment of Brachial-Ankle Pulse Wave Velocity and Stiffness Index: Hypertriglyceridemia Effects on Arterial Stiffness. 537-541 - Leyla Aydin, Erhan Kiziltan, Ersin E., Bahadir Azizaaolu, Arda Bekkaraman, Selen Doan, Gizem Ertirk, Cansel Ku:
Is Central Origin of Muscle Fatigue Distinguished Solely in Finger Tapping Performance? 542-547 - Nizamettin Dalkilic, Seckin Tuncer, Ilksen Burat:
Noninvasive Invastigation of Excitability Parameters of the Finger Branches of Median Nerve by Threshold Tracking Method. 548-554 - Tijana Tuteric, Aleksandra Vulovic, Sandra Cvijic, Svetlana Ibric, Nenad Filipovic:
Effect of Circulation Chamber Dimensions on Aerosol Delivery Efficiency of a Commercial Dry Powder Inhaler Aerolizer®. 555-558
Analysis of Bio-Data & Health Care
- Aleksandra Vulovic, Tijana Sustersic, Nenad Filipovic:
Finite Element Analysis of Femoral Implant Under Static Load. 559-562 - Smiljana Djorovic, Nenad Filipovic, Aleksandar Milosavljevic, Lazar U. Velicki:
Comparative Finite Element Analysis of Patient-Specific Tricuspid and Bicuspid Aortic Valve. 563-567 - Anis Davoudi, Tezcan Ozrazgat-Baslanti, Ashkan Ebadi, Alberto C. Bursian, Azra Bihorac, Parisa Rashidi:
Delirium Prediction using Machine Learning Models on Predictive Electronic Health Records Data. 568-573 - Ioannis Paliokas, Alexandros T. Tzallas, Nikolaos S. Katertsidis, Konstantinos Votis, Dimitrios Tzovaras:
Gamification in Social Networking: A Platform for People Living with Dementia and their Caregivers. 574-579 - Yasaman Ettefagh, Mohammad Hossein Moghaddam, Saeed Vahidian:
A novel low-complexity framework in ultra-wideband imaging for breast cancer detection. 580-584
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