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ORCIDFrontiers in Neuroinformatics, Volume 3
Volume 3, 2009
- Michael L. Hines, Andrew P. Davison
, Eilif B. Müller:
NEURON and Python. 1 - Landon T. Detwiler, Dan Suciu, Joshua D. Franklin, Eider B. Moore, Andrew V. Poliakov, Eunjung Lee, David P. Corina, George A. Ojemann, James F. Brinkley:
Distributed XQuery-based integration and visualization of multimodality brain mapping data. 2 - Michael Hanke, Yaroslav O. Halchenko, Per B. Sederberg, Emanuele Olivetti, Ingo Fründ, Jochem W. Rieger, Christoph S. Herrmann, James V. Haxby, Stephen José Hanson, Stefan Pollmann:
PyMVPA: a unifying approach to the analysis of neuroscientific data. 3 - Robin A. A. Ince, Rasmus S. Petersen, Daniel C. Swan, Stefano Panzeri:
Python for information theoretic analysis of neural data. 4 - Peter Jurica, Cees van Leeuwen:
OMPC: an open-source MATLAB®-to-Python compiler. 5 - Charles W. Fox, Mark D. Humphries, Ben Mitchinson, Tamás Kiss, Zoltán Somogyvári, Tony J. Prescott:
Technical integration of hippocampus, basal ganglia and physical models for spatial navigation. 6 - Terrence C. Stewart, Bryan P. Tripp, Chris Eliasmith:
Python scripting in the Nengo simulator. 7 - James A. Bednar:
Topographica: building and analyzing map-level simulations from Python, C/C++, MATLAB, NEST, or NEURON components. 8 - Andre D. Gouws, Will P. Woods, Rebecca E. Millman, Antony B. Morland, Gary G. R. Green:
DataViewer3D: An open-source, cross-platform multi-modal neuroimaging data visualization tool. 9 - James Gonzalo King, Michael L. Hines, Sean L. Hill, Philip H. Goodman, Henry Markram, Felix Schürmann:
A component-based extension framework for large-scale parallel simulations in NEURON. 10 - Dejan Pecevski, Thomas Natschläger, Klaus Schuch:
PCSIM: a parallel simulation environment for neural circuits fully integrated with Python. 11 - Gary Strangman, Quan Zhang, Thomas A. Zeffiro:
Near-infrared neuroimaging with NinPy. 12 - Ryoji Yanashima, Noriyuki Kitagawa, Yoshiya Matsubara, Robert Weatheritt, Kotaro Oka, Shinichi Kikuchi, Masaru Tomita, Shun Ishizaki:
Network features and pathway analyses of a signal transduction cascade. 13 - Samuel Garcia, Nicolas Fourcaud-Trocmé:
OpenElectrophy: an electrophysiological data- and analysis-sharing framework. 14 - Stefan Wils, Erik De Schutter:
STEPS: modeling and simulating complex reaction-diffusion systems with Python. 15 - Rich Drewes, Quan Zou, Philip H. Goodman:
Brainlab: a Python toolkit to aid in the design, simulation, and analysis of spiking neural networks with the NeoCortical Simulator. 16 - Daniel Brüderle, Eric Müller, Andrew P. Davison, Eilif B. Müller, Johannes Schemmel, Karlheinz Meier:
Establishing a novel modeling tool: a python-based interface for a neuromorphic hardware system. 17 - Vesa Kiviniemi, Jukka J. Remes, Tuomo Starck, Juha Nikkinen, Marianne Haapea, Olli Silvén, Osmo Tervonen:
Mapping transient hyperventilation induced alterations with estimates of the multi-scale dynamics of BOLD signal. 18 - Jason M. Lohrey, Neil E. B. Killeen, Gary F. Egan:
An integrated object model and method framework for subject-centric e-Research applications. 19 - Stefan J. Kiebel, Jean Daunizeau, Karl J. Friston:
Perception and hierarchical dynamics. 20 - Hubert Eichner, Tobias Klug, Alexander Borst:
Neural simulations on multi-core architectures. 21 - Ivo D. Dinov, John D. Van Horn, Kamen Lozev, Rico Magsipoc, Petros Petrosyan, Zhizhong Liu, Allan MacKenzie-Graham, Paul R. Eggert, Douglas Stott Parker, Arthur W. Toga:
Efficient, distributed and interactive neuroimaging data analysis using the LONI pipeline. 22 - Angela R. Laird, Simon B. Eickhoff, Florian Kurth, Peter M. Fox, Angela Uecker, Jessica A. Turner, Jennifer L. Robinson, Jack L. Lancaster, Peter T. Fox:
ALE meta-analysis workflows via the BrainMap database: progress towards a probabilistic functional brain atlas. 23 - Francisco Aparecido Rodrigues, Luciano da F. Costa:
Signal propagation in cortical networks: a digital signal processing approach. 24 - Daniel Mietchen, Christian Gaser:
Computational morphometry for detecting changes in brain structure due to development, aging, learning, disease and evolution. 25 - Finn Årup Nielsen:
Visualizing data mining results with the Brede tools. 26 - Cinly Ooi, Edward T. Bullmore, Alle Meije Wink, Levent Sendur, Anna Barnes, Sophie Achard, John Aspden, Sanja Abbott, Shigang Yue, Manfred G. Kitzbichler, David Meunier, Voichita Maxim, Raymond Salvador, Julian Henty, Roger Tait, Naresh Subramaniam, John Suckling:
CamBAfx: workflow design, implementation and application for neuroimaging. 27 - Marc-Thorsten Hütt, Annick Lesne:
Interplay between topology and dynamics in excitation patterns on hierarchical graphs. 28 - Leon French, Suzanne Lane, Lydia Xu, Paul Pavlidis:
Automated recognition of brain region mentions in neuroscience literature. 29 - David B. Keator, Dingying Wei, Syam Gadde, Henry Jeremy Bockholt, Jeffrey S. Grethe, Daniel S. Marcus, Nicole Aucoin, Ibrahim Burak Özyurt:
Derived data storage and exchange workflow for large-scale neuroimaging analyses on the BIRN grid. 30 - John D. Van Horn, Arthur W. Toga:
Neuroimaging workflow design and data-mining: a Frontiers in Neuroinformatics special issue. 31 - Meron Gurkiewicz, Dana Iron, Izhar Bar-Gad, Alon Korngreen:
Rise of the appendage. 32 - Sergi G. Costafreda:
Pooling fMRI data: meta-analysis, mega-analysis and multi-center studies. 33 - Sarah Kenny, Michael Andric, Steven M. Boker, Michael C. Neale, Michael Wilde, Steven L. Small:
Parallel workflows for data-driven structural equation modeling in functional neuroimaging. 34 - Xi Cheng, Ricardo Pizarro, Yunxia Tong, Bradley Zoltick, Qian Luo, Daniel R. Weinberger, Venkata S. Mattay:
Bio-Swarm-Pipeline: a light-weight, extensible batch processing system for efficient biomedical data processing. 35 - Henry Jeremy Bockholt, Mark Scully, William Courtney, Srinivas Rachakonda, Adam Scott, Arvind Caprihan, Jill Fries, Ravi Kalyanam, Judith M. Segall, Raul de la Garza, Susan R. Lane, Vince D. Calhoun:
Mining the mind research network: a novel framework for exploring large scale, heterogeneous translational neuroscience research data sources. 36 - David Meunier, Renaud Lambiotte, Alex Fornito, Karen D. Ersche, Edward T. Bullmore:
Hierarchical modularity in human brain functional networks. 37 - Shantanu H. Joshi, John D. Van Horn, Arthur W. Toga:
Interactive exploration of neuroanatomical meta-spaces. 38 - Eilen Nordlie, Hans Ekkehard Plesser:
Visualizing neuronal network connectivity with connectivity pattern tables. 39
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