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2020 – today
- 2024
[c26]Alexander Oberstraß, Jordan DeKraker, Nicola Palomero-Gallagher, Sascha E. A. Muenzing, Alan C. Evans, Markus Axer, Katrin Amunts, Timo Dickscheid
:
Analyzing Regional Organization of The Human Hippocampus in 3D-PLI Using Contrastive Learning and Geometric Unfolding. ISBI 2024: 1-5- [i4]Alexander Oberstraß, Sascha E. A. Muenzing, Meiqi Niu, Nicola Palomero-Gallagher, Christian Schiffer, Markus Axer, Katrin Amunts, Timo Dickscheid:
Self-Supervised Representation Learning for Nerve Fiber Distribution Patterns in 3D-PLI. CoRR abs/2401.17207 (2024) - [i3]Alexander Oberstraß, Jordan DeKraker, Nicola Palomero-Gallagher, Sascha E. A. Muenzing, Alan C. Evans, Markus Axer, Katrin Amunts, Timo Dickscheid:
Analyzing Regional Organization of the Human Hippocampus in 3D-PLI Using Contrastive Learning and Geometric Unfolding. CoRR abs/2402.17744 (2024) - 2022
- [j13]Anastasia Yendiki, Manisha Aggarwal, Markus Axer, Amy F. D. Howard, Anne-Marie van Cappellen van Walsum, Suzanne N. Haber:
Post mortem mapping of connectional anatomy for the validation of diffusion MRI. NeuroImage 256: 119146 (2022) - [c25]Esteban Vaca, Miriam Menzel, Katrin Amunts, Markus Axer, Timo Dickscheid:
GORDA: Graph-Based Orientation Distribution Analysis of SLI Scatterometry Patterns of Nerve Fibres. ISBI 2022: 1-5 - [i2]Esteban Vaca, Miriam Menzel, Katrin Amunts, Markus Axer, Timo Dickscheid:
GORDA: Graph-based ORientation Distribution Analysis of SLI scatterometry Patterns of Nerve Fibres. CoRR abs/2204.05776 (2022) - 2021
- [j12]Felix Matuschke, Katrin Amunts, Markus Axer:
fastPLI: A Fiber Architecture Simulation Toolbox for 3D-PLI. J. Open Source Softw. 6(61): 3042 (2021) - [j11]Miriam Menzel, Jan André Reuter, David Gräßel, Mike Huwer, Philipp Schlömer, Katrin Amunts, Markus Axer:
Scattered Light Imaging: Resolving the substructure of nerve fiber crossings in whole brain sections with micrometer resolution. NeuroImage 233: 117952 (2021) - 2020
- [j10]Abib Alimi, Samuel Deslauriers-Gauthier, Felix Matuschke, Andreas Müller, Sascha E. A. Muenzing, Markus Axer, Rachid Deriche:
Analytical and fast Fiber Orientation Distribution reconstruction in 3D-Polarized Light Imaging. Medical Image Anal. 65: 101760 (2020)
2010 – 2019
- 2019
- [j9]Jan André Reuter, Felix Matuschke, Miriam Menzel, Nicole Schubert, Kévin Ginsburger, Cyril Poupon, Katrin Amunts, Markus Axer:
FAConstructor: an interactive tool for geometric modeling of nerve fiber architectures in the brain. Int. J. Comput. Assist. Radiol. Surg. 14(11): 1881-1889 (2019) - [j8]Kévin Ginsburger, Felix Matuschke, Fabrice Poupon, Jean-François Mangin, Markus Axer, Cyril Poupon:
MEDUSA: A GPU-based tool to create realistic phantoms of the brain microstructure using tiny spheres. NeuroImage 193: 10-24 (2019) - [c24]Marius Nolden, Nicole Schubert, Daniel Schmitz, Andreas Müller, Markus Axer:
Tracing of Nerve Fibers Through Brain Regions of Fiber Crossings in Reconstructed 3D-PLI Volumes. Bildverarbeitung für die Medizin 2019: 62-67 - [c23]Jan André Reuter, Felix Matuschke, Nicole Schubert, Markus Axer:
Efficient Construction of Geometric Nerve Fiber Models for Simulation with 3D-PLI. Bildverarbeitung für die Medizin 2019: 333-338 - [c22]Kai Benning, Miriam Menzel, Jan André Reuter, Markus Axer:
Independent Component Analysis for Noise and Artifact Removal in Three-Dimensional Polarized Light Imaging. BrainComp 2019: 90-102 - [c21]Abib Alimi, Samuel Deslauriers-Gauthier, Felix Matuschke, Daniel Schmitz, Markus Axer, Rachid Deriche:
Analytical Fiber ODF Reconstruction in 3D Polarized Light Imaging: Performance Assessment. ISBI 2019: 1652-1655 - [c20]Ali C. Demiralp, Daniel Zielasko, Markus Axer, Tom Vierjahn, Torsten W. Kuhlen:
Parallel Particle Advection and Lagrangian Analysis for 3D-PLI Fiber Orientation Maps. LDAV 2019: 89-90 - 2018
- [j7]Sharib Ali, Stefan Wörz, Katrin Amunts, Roland Eils, Markus Axer, Karl Rohr:
Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution. NeuroImage 181: 235-251 (2018) - [c19]Sharib Ali, Dehui Lin, Markus Axer, Karl Rohr:
Comparison of Self-similarity Measures for Multi-modal Non-rigid Registration of 3D-PLI Brain Images. Bildverarbeitung für die Medizin 2018: 49-54 - [c18]Daniel Schmitz, Katrin Amunts, Thomas Lippert, Markus Axer:
A least squares approach for the reconstruction of nerve fiber orientations from tiltable specimen experiments in 3D-PLI. ISBI 2018: 132-135 - [c17]Sharib Ali, Markus Axer, Katrin Amunts, Roland Eils, Karl Rohr:
Evaluating local features in high-resolution 3D-PLI data. ISBI 2018: 729-733 - [c16]Sharib Ali, Katrin Amunts, Roland Eils, Markus Axer, Karl Rohr:
Scale-bundle spline-based non-rigid registration for handling fissures. ISBI 2018: 762-765 - [c15]Sharib Ali, Martin Schober, Philipp Schlömer, Katrin Amunts, Markus Axer, Karl Rohr:
Towards Ultra-High Resolution 3D Reconstruction of a Whole Rat Brain from 3D-PLI Data. CNI@MICCAI 2018: 1-10 - [i1]Sharib Ali, Martin Schober, Philipp Schlömer, Katrin Amunts, Markus Axer, Karl Rohr:
Towards ultra-high resolution 3D reconstruction of a whole rat brain from 3D-PLI data. CoRR abs/1807.11080 (2018) - 2017
- [c14]Sharib Ali, Karl Rohr, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Markus Axer, Stefan Wörz:
Spline-Based Multimodal Image Registration of 3D PLI Data of the Human Brain. Bildverarbeitung für die Medizin 2017: 268-273 - [c13]Sharib Ali, Karl Rohr, Markus Axer, Katrin Amunts, Roland Eils, Stefan Wörz:
Registration of ultra-high resolution 3D PLI data of human brain sections to their corresponding high-resolution counterpart. ISBI 2017: 415-419 - [c12]Sharib Ali, Karl Rohr, Markus Axer, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Stefan Wörz:
Elastic registration of high-resolution 3D PLI data of the human brain. ISBI 2017: 1151-1155 - [c11]Claudia Hänel, Ali C. Demiralp, Markus Axer, David Gräßel, Bernd Hentschel, Torsten W. Kuhlen:
Interactive Level-of-Detail Visualization of 3D-Polarized Light Imaging Data Using Spherical Harmonics. EuroVis (Short Papers) 2017: 127-131 - 2016
- [c10]Martin Schober, Markus Axer, Marcel Huysegoms, Nicole Schubert, Katrin Amunts, Timo Dickscheid:
Morphing Image Masks for Stacked Histological Sections Using Laplace's Equation. Bildverarbeitung für die Medizin 2016: 146-151 - [c9]Nicole Schubert, David Gräßel, Uwe Pietrzyk, Katrin Amunts, Markus Axer:
Visualization of Vector Fields Derived from 3D Polarized Light Imaging. Bildverarbeitung für die Medizin 2016: 176-181 - 2015
- [j6]Melanie Dohmen, Miriam Menzel, Hendrik Wiese, Julia Reckfort, Frederike Hanke, Uwe Pietrzyk, Karl Zilles, Katrin Amunts, Markus Axer:
Understanding fiber mixture by simulation in 3D Polarized Light Imaging. NeuroImage 111: 464-475 (2015) - [c8]Nicole Schubert, Mehmet Eylem Kirlangic, Martin Schober, Anh-Minh Huynh, Katrin Amunts, Karl Zilles, Markus Axer:
3D Reconstruction of Histological Rat Brain Images. Bildverarbeitung für die Medizin 2015: 149-154 - [c7]Anh-Minh Huynh, Mehmet Eylem Kirlangic, Nicole Schubert, Martin Schober, Katrin Amunts, Karl Zilles, Markus Axer:
Reconstructing a Series of Auto-Radiographic Images in Rat Brains. Bildverarbeitung für die Medizin 2015: 167-172 - [c6]Anna Lührs, Oliver Bücker, Markus Axer:
Towards Large-Scale Fiber Orientation Models of the Brain - Automation and Parallelization of a Seeded Region Growing Segmentation of High-Resolution Brain Section Images. BrainComp 2015: 28-42 - [c5]Miriam Menzel, Markus Axer, Hans De Raedt, Kristel Michielsen:
Finite-Difference Time-Domain Simulation for Three-Dimensional Polarized Light Imaging. BrainComp 2015: 73-85 - 2013
- [c4]Katrin Amunts, Oliver Bücker, Markus Axer:
Towards a Multiscale, High-Resolution Model of the Human Brain. BrainComp 2013: 3-14 - [c3]Andrew V. Adinetz, Jiri Kraus, Markus Axer, Marcel Huysegoms, Stefan Köhnen, Dirk Pleiter:
Computation of Mutual Information Metric for Image Registration on Multiple GPUs. Euro-Par Workshops 2013: 208-217 - 2012
- [j5]Jürgen Dammers, Lukas Breuer, Markus Axer, Melanie Kleiner, Björn Eiben, David Gräßel, Timo Dickscheid, Karl Zilles, Katrin Amunts, Nadim Joni Shah, Uwe Pietrzyk:
Automatic identification of gray and white matter components in polarized light imaging. NeuroImage 59(2): 1338-1347 (2012) - [c2]Melanie Kleiner, Markus Axer, David Gräßel, Julia Reckfort, Uwe Pietrzyk, Katrin Amunts, Timo Dickscheid:
Classification of Ambiguous Nerve Fiber Orientations in 3D Polarized Light Imaging. MICCAI (1) 2012: 206-213 - 2011
- [j4]Hubertus Axer, Sindy Beck, Markus Axer, Friederike Schuchardt, Jörn Heepe, Anja Flücken, Martina Axer, Andreas Prescher, Otto W. Witte:
Microstructural Analysis of Human White Matter Architecture Using Polarized Light Imaging: Views from Neuroanatomy. Frontiers Neuroinformatics 5: 28 (2011) - [j3]Markus Axer, David Gräßel, Melanie Kleiner, Jürgen Dammers, Timo Dickscheid, Julia Reckfort, Tim Hütz, Björn Eiben, Uwe Pietrzyk, Karl Zilles, Katrin Amunts:
High-Resolution Fiber Tract Reconstruction in the Human Brain by Means of Three-Dimensional Polarized Light Imaging. Frontiers Neuroinformatics 5: 34 (2011) - [j2]Markus Axer, Katrin Amunts, David Gräßel, Christoph Palm, Jürgen Dammers, Hubertus Axer, Uwe Pietrzyk, Karl Zilles:
A novel approach to the human connectome: Ultra-high resolution mapping of fiber tracts in the brain. NeuroImage 54(2): 1091-1101 (2011) - 2010
- [j1]Jürgen Dammers, Markus Axer, David Gräßel, Christoph Palm, Karl Zilles, Katrin Amunts, Uwe Pietrzyk:
Signal enhancement in polarized light imaging by means of independent component analysis. NeuroImage 49(2): 1241-1248 (2010)
2000 – 2009
- 2001
- [c1]Hubertus Axer, Timo Krings, Markus Axer, Diedrich Graf v. Keyserlingk:
Die Orientierung der Nervenfasern im menschlichen Gehirn sichtbar gemacht. Bildverarbeitung für die Medizin 2001: 330-334
Coauthor Index
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