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2020 – today
- 2021
[j47]Arush Honnedevasthana Arun
, Alan Connelly, Robert Elton Smith, Fernando Calamante:
Characterisation of white matter asymmetries in the healthy human brain using diffusion MRI fixel-based analysis. NeuroImage 225: 117505 (2021)- 2020
- [j46]Dennis Dimond, Christiane S. Rohr, Robert E. Smith, Thijs Dhollander, Ivy Cho, Catherine Lebel, Deborah Dewey, Alan Connelly, Signe Bray:
Early childhood development of white matter fiber density and morphology. NeuroImage 210: 116552 (2020) - [j45]Dennis Dimond, Stella Heo, Amanda Ip, Christiane S. Rohr, Ryann Tansey, Kirk Graff, Thijs Dhollander, Robert E. Smith, Catherine Lebel, Deborah Dewey, Alan Connelly, Signe Bray:
Maturation and interhemispheric asymmetry in neurite density and orientation dispersion in early childhood. NeuroImage 221: 117168 (2020)
2010 – 2019
- 2019
- [j44]Xiaoyun Liang, Chun-Hung Yeh, Alan Connelly, Fernando Calamante:
A Novel Method for Extracting Hierarchical Functional Subnetworks Based on a Multisubject Spectral Clustering Approach. Brain Connect. 9(5): 399-414 (2019) - [j43]Oren Civier, Robert Elton Smith, Chun-Hung Yeh, Alan Connelly, Fernando Calamante:
Is removal of weak connections necessary for graph-theoretical analysis of dense weighted structural connectomes from diffusion MRI? NeuroImage 194: 68-81 (2019) - [j42]Chun-Hung Yeh, Robert E. Smith, Thijs Dhollander, Fernando Calamante, Alan Connelly:
Connectomes from streamlines tractography: Assigning streamlines to brain parcellations is not trivial but highly consequential. NeuroImage 199: 160-171 (2019) - [j41]Jacques-Donald Tournier, Robert E. Smith, David Raffelt, Rami Tabbara, Thijs Dhollander, Maximilian Pietsch, Daan Christiaens, Ben Jeurissen, Chun-Hung Yeh, Alan Connelly:
MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. NeuroImage 202 (2019) - 2017
- [j40]David A. Raffelt, Jacques-Donald Tournier, Robert E. Smith, David N. Vaughan, Graeme D. Jackson, Gerard R. Ridgway, Alan Connelly:
Investigating white matter fibre density and morphology using fixel-based analysis. NeuroImage 144: 58-73 (2017) - 2016
- [j39]Chun-Hung Yeh, Robert E. Smith, Xiaoyun Liang, Fernando Calamante, Alan Connelly:
Correction for diffusion MRI fibre tracking biases: The consequences for structural connectomic metrics. NeuroImage 142: 150-162 (2016) - [j38]Wai Yen Loh, Alan Connelly, Jeanie L. Y. Cheong, Alicia J. Spittle, Jian Chen, Christopher L. Adamson, Zohra M. Ahmadzai, Lillian Gabra Fam, Sandra Rees, Katherine J. Lee, Lex W. Doyle, Peter J. Anderson, Deanne K. Thompson:
A New MRI-Based Pediatric Subcortical Segmentation Technique (PSST). Neuroinformatics 14(1): 69-81 (2016) - 2015
- [j37]Xiaoyun Liang, Alan Connelly, Fernando Calamante:
Voxel-Wise Functional Connectomics Using Arterial Spin Labeling Functional Magnetic Resonance Imaging: The Role of Denoising. Brain Connect. 5(9): 543-553 (2015) - [j36]Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly:
The effects of SIFT on the reproducibility and biological accuracy of the structural connectome. NeuroImage 104: 253-265 (2015) - [j35]David A. Raffelt, Robert E. Smith, Gerard R. Ridgway, Jacques-Donald Tournier, David N. Vaughan, Stephen E. Rose, Robert D. Henderson, Alan Connelly:
Connectivity-based fixel enhancement: Whole-brain statistical analysis of diffusion MRI measures in the presence of crossing fibres. NeuroImage 117: 40-55 (2015) - [j34]Amir Fazlollahi, Pierrick Bourgeat, Xiaoyun Liang, Fabrice Mériaudeau, Alan Connelly, Olivier Salvado, Fernando Calamante:
Reproducibility of multiphase pseudo-continuous arterial spin labeling and the effect of post-processing analysis methods. NeuroImage 117: 191-201 (2015) - [j33]Fernando Calamante, Robert E. Smith, Jacques-Donald Tournier, David Raffelt, Alan Connelly:
Quantification of voxel-wise total fibre density: Investigating the problems associated with track-count mapping. NeuroImage 117: 284-293 (2015) - [j32]Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly:
SIFT2: Enabling dense quantitative assessment of brain white matter connectivity using streamlines tractography. NeuroImage 119: 338-351 (2015) - [j31]Thomas G. Close, Jacques-Donald Tournier, Leigh A. Johnston, Fernando Calamante, Iven Mareels, Alan Connelly:
Fourier Tract Sampling (FouTS): A framework for improved inference of white matter tracts from diffusion MRI by explicitly modelling tract volume. NeuroImage 120: 412-427 (2015) - 2014
- [j30]Lisa Willats, David Raffelt, Robert E. Smith, Jacques-Donald Tournier, Alan Connelly, Fernando Calamante:
Quantification of track-weighted imaging (TWI): Characterisation of within-subject reproducibility and between-subject variability. NeuroImage 87: 18-31 (2014) - [j29]Samuel Groeschel, Jacques-Donald Tournier, Gemma B. Northam, Torsten Baldeweg, John Wyatt, Brigitte Vollmer, Alan Connelly:
Identification and interpretation of microstructural abnormalities in motor pathways in adolescents born preterm. NeuroImage 87: 209-219 (2014) - [j28]Xiaoyun Liang, Alan Connelly, Fernando Calamante:
Graph analysis of resting-state ASL perfusion MRI data: Nonlinear correlations among CBF and network metrics. NeuroImage 87: 265-275 (2014) - [j27]Jhimli Mitra, Pierrick Bourgeat, Jurgen Fripp, Soumya Ghose, Stephen E. Rose, Olivier Salvado, Alan Connelly, Bruce Campbell, Susan Palmer, Gagan Sharma, Soren Christensen, Leeanne Carey:
Lesion segmentation from multimodal MRI using random forest following ischemic stroke. NeuroImage 98: 324-335 (2014) - [j26]Kay Richards, Fernando Calamante, Jacques-Donald Tournier, Nyoman D. Kurniawan, Farnoosh Sadeghian, Alexander R. Retchford, Gabriel Davis Jones, Christopher A. Reid, David C. Reutens, Roger J. Ordidge, Alan Connelly, Steven Petrou:
Mapping somatosensory connectivity in adult mice using diffusion MRI tractography and super-resolution track density imaging. NeuroImage 102: 381-392 (2014) - [j25]Ben Jeurissen, Jacques-Donald Tournier, Thijs Dhollander, Alan Connelly, Jan Sijbers:
Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data. NeuroImage 103: 411-426 (2014) - 2013
- [j24]Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly:
SIFT: Spherical-deconvolution informed filtering of tractograms. NeuroImage 67: 298-312 (2013) - [j23]Fernando Calamante, Richard A. J. Masterton, Jacques-Donald Tournier, Robert E. Smith, Lisa Willats, David Raffelt, Alan Connelly:
Track-weighted functional connectivity (TW-FC): A tool for characterizing the structural-functional connections in the brain. NeuroImage 70: 199-210 (2013) - [c1]Jhimli Mitra, Pierrick Bourgeat, Jurgen Fripp, Soumya Ghose, Stephen E. Rose, Olivier Salvado, Alan Connelly, Bruce Campbell, Susan Palmer, Gagan Sharma, Soren Christensen, Leeanne Carey:
Classification Forests and Markov Random Field to Segment Chronic Ischemic Infarcts from Multimodal MRI. MBIA 2013: 107-118 - 2012
- [j22]Xiaoyun Liang, Jacques-Donald Tournier, Richard A. J. Masterton, Alan Connelly, Fernando Calamante:
A k-space sharing 3D GRASE pseudocontinuous ASL method for whole-brain resting-state functional connectivity. Int. J. Imaging Syst. Technol. 22(1): 37-43 (2012) - [j21]Jacques-Donald Tournier, Fernando Calamante, Alan Connelly:
MRtrix: Diffusion tractography in crossing fiber regions. Int. J. Imaging Syst. Technol. 22(1): 53-66 (2012) - [j20]Fernando Calamante, Jacques-Donald Tournier, Nyoman D. Kurniawan, Zhengyi Yang, Erika Gyengesi, Graham J. Galloway, David C. Reutens, Alan Connelly:
Super-resolution track-density imaging studies of mouse brain: Comparison to histology. NeuroImage 59(1): 286-296 (2012) - [j19]Fernando Calamante, Alan Connelly:
Comment on time-varying eddy currents effects on diffusion-weighting echo-planar imaging. NeuroImage 59(2): 881-882 (2012) - [j18]Fernando Calamante, Jacques-Donald Tournier, Robert E. Smith, Alan Connelly:
A generalised framework for super-resolution track-weighted imaging. NeuroImage 59(3): 2494-2503 (2012) - [j17]David Raffelt, Jacques-Donald Tournier, Stephen E. Rose, Gerard R. Ridgway, Robert D. Henderson, Stuart Crozier, Olivier Salvado, Alan Connelly:
Apparent Fibre Density: A novel measure for the analysis of diffusion-weighted magnetic resonance images. NeuroImage 59(4): 3976-3994 (2012) - [j16]Robert E. Smith, Jacques-Donald Tournier, Fernando Calamante, Alan Connelly:
Anatomically-constrained tractography: Improved diffusion MRI streamlines tractography through effective use of anatomical information. NeuroImage 62(3): 1924-1938 (2012) - 2011
- [j15]David Raffelt, Jacques-Donald Tournier, Jurgen Fripp, Stuart Crozier, Alan Connelly, Olivier Salvado:
Symmetric diffeomorphic registration of fibre orientation distributions. NeuroImage 56(3): 1171-1180 (2011) - [j14]Fernando Calamante, Jacques-Donald Tournier, Robin M. Heidemann, Alfred Anwander, Graeme D. Jackson, Alan Connelly:
Track density imaging (TDI): Validation of super resolution property. NeuroImage 56(3): 1259-1266 (2011) - 2010
- [j13]Chun-Hung Yeh, Jacques-Donald Tournier, Kuan-Hung Cho, Ching-Po Lin, Fernando Calamante, Alan Connelly:
The effect of finite diffusion gradient pulse duration on fibre orientation estimation in diffusion MRI. NeuroImage 51(2): 743-751 (2010) - [j12]Fernando Calamante, Jacques-Donald Tournier, Graeme D. Jackson, Alan Connelly:
Track-density imaging (TDI): Super-resolution white matter imaging using whole-brain track-density mapping. NeuroImage 53(4): 1233-1243 (2010)
2000 – 2009
- 2009
- [j11]Thomas G. Close, Jacques-Donald Tournier, Fernando Calamante, Leigh A. Johnston, Iven M. Y. Mareels, Alan Connelly:
A software tool to generate simulated white matter structures for the assessment of fibre-tracking algorithms. NeuroImage 47(4): 1288-1300 (2009) - 2008
- [j10]Jacques-Donald Tournier, Chun-Hung Yeh, Fernando Calamante, Kuan-Hung Cho, Alan Connelly, Ching-Po Lin:
Resolving crossing fibres using constrained spherical deconvolution: Validation using diffusion-weighted imaging phantom data. NeuroImage 42(2): 617-625 (2008) - 2007
- [j9]Jacques-Donald Tournier, Fernando Calamante, Alan Connelly:
Robust determination of the fibre orientation distribution in diffusion MRI: Non-negativity constrained super-resolved spherical deconvolution. NeuroImage 35(4): 1459-1472 (2007) - [j8]Alison Rowan, Faraneh Vargha-Khadem, Fernando Calamante, Jacques-Donald Tournier, Fenella J. Kirkham, Wui K. Chong, Torsten Baldeweg, Alan Connelly, David G. Gadian:
Cortical abnormalities and language function in young patients with basal ganglia stroke. NeuroImage 36(2): 431-440 (2007) - 2005
- [j7]Francesca Cormack, David G. Gadian, Faraneh Vargha-Khadem, J. Helen Cross, Alan Connelly, Torsten Baldeweg:
Extra-hippocampal grey matter density abnormalities in paediatric mesial temporal sclerosis. NeuroImage 27(3): 635-643 (2005) - 2004
- [j6]Alison Rowan, Frédérique Liégeois, Faraneh Vargha-Khadem, David G. Gadian, Alan Connelly, Torsten Baldeweg:
Cortical lateralization during verb generation: a combined ERP and fMRI study. NeuroImage 22(2): 665-675 (2004) - [j5]Jacques-Donald Tournier, Fernando Calamante, David G. Gadian, Alan Connelly:
Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage 23(3): 1176-1185 (2004) - 2003
- [j4]Jacques-Donald Tournier, Fernando Calamante, David G. Gadian, Alan Connelly:
Diffusion-weighted magnetic resonance imaging fibre tracking using a front evolution algorithm. NeuroImage 20(1): 276-288 (2003) - 2002
- [j3]C. H. Salmond, John Ashburner, Faraneh Vargha-Khadem, Alan Connelly, David G. Gadian, Karl J. Friston:
The Precision of Anatomical Normalization in the Medial Temporal Lobe Using Spatial Basis Functions. NeuroImage 17(1): 507-512 (2002) - [j2]C. H. Salmond, John Ashburner, Faraneh Vargha-Khadem, Alan Connelly, David G. Gadian, Karl J. Friston:
Distributional Assumptions in Voxel-Based Morphometry. NeuroImage 17(2): 1027-1030 (2002) - [j1]Frédérique Liégeois, Alan Connelly, C. H. Salmond, David G. Gadian, Faraneh Vargha-Khadem, Torsten Baldeweg:
A Direct Test for Lateralization of Language Activation using fMRI: Comparison with Invasive Assessments in Children with Epilepsy. NeuroImage 17(4): 1861-1867 (2002)
Coauthor Index
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