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2020 – today
- 2021
[j8]Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry:
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum). Nucleic Acids Res. 49(Database-Issue): D1555 (2021)- [j7]Samuel M. D. Seaver
, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry:
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes. Nucleic Acids Res. 49(Database-Issue): D575-D588 (2021)
2010 – 2019
- 2018
- [j6]Brendan King, Terry Farrah, Matthew A. Richards, Michael B. Mundy, Evangelos Simeonidis, Nathan D. Price:
ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions. Bioinform. 34(9): 1594-1596 (2018) - 2017
- [j5]Michael B. Mundy, Helena Mendes-Soares, Nicholas Chia:
Mackinac: a bridge between ModelSEED and COBRApy to generate and analyze genome-scale metabolic models. Bioinform. 33(15): 2416-2418 (2017) - 2016
- [j4]Helena Mendes-Soares, Michael B. Mundy, Luis Mendes Soares, Nicholas Chia:
MMinte: an application for predicting metabolic interactions among the microbial species in a community. BMC Bioinform. 17: 343 (2016) - 2014
- [j3]Matthew N. Benedict, Michael B. Mundy, Christopher S. Henry, Nicholas Chia, Nathan D. Price:
Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models. PLoS Comput. Biol. 10(10) (2014)
2000 – 2009
- 2007
- [j2]José E. Moreira, Valentina Salapura, George Almási, Charles Archer, Ralph Bellofatto, Peter Bergner, Randy Bickford, Matthias A. Blumrich, José R. Brunheroto, Arthur A. Bright, Michael Brutman, José G. Castaños, Dong Chen, Paul Coteus, Paul Crumley, Sam Ellis, Thomas Engelsiepen, Alan Gara, Mark Giampapa, Tom Gooding, Shawn Hall, Ruud A. Haring, Roger L. Haskin, Philip Heidelberger, Dirk Hoenicke, Todd Inglett, Gerard V. Kopcsay, Derek Lieber, David Limpert, Patrick McCarthy, Mark Megerian, Michael B. Mundy, Martin Ohmacht, Jeff Parker, Rick A. Rand, Don Reed, Ramendra K. Sahoo, Alda Sanomiya, Richard Shok, Brian E. Smith, Gordon G. Stewart, Todd Takken, Pavlos Vranas, Brian P. Wallenfelt, Michael Blocksome, Joe Ratterman:
The Blue Gene/L Supercomputer: A Hardware and Software Story. Int. J. Parallel Program. 35(3): 181-206 (2007) - 2006
- [c2]José E. Moreira, Michael Brutman, José G. Castaños, Thomas Engelsiepen, Mark Giampapa, Tom Gooding, Roger L. Haskin, Todd Inglett, Derek Lieber, Patrick McCarthy, Michael B. Mundy, Jeff Parker, Brian P. Wallenfelt:
Blue Gene system software - Designing a highly-scalable operating system: the Blue Gene/L story. SC 2006: 118 - [c1]Michael Blocksome, Charles Archer, Todd Inglett, Patrick McCarthy, Michael B. Mundy, Joe Ratterman, A. Sidelnik, Brian E. Smith, George Almási, José G. Castaños, Derek Lieber, José E. Moreira, Sriram Krishnamoorthy, Vinod Tipparaju, Jarek Nieplocha:
Blue Gene system software - Design and implementation of a one-sided communication interface for the IBM eServer Blue Gene® supercomputer. SC 2006: 120 - 2005
- [j1]José E. Moreira, George Almási, Charles Archer, Ralph Bellofatto, Peter Bergner, José R. Brunheroto, Michael Brutman, José G. Castaños, Paul Crumley, Manish Gupta, Todd Inglett, Derek Lieber, David Limpert, Patrick McCarthy, Mark Megerian, Mark P. Mendell, Michael B. Mundy, Don Reed, Ramendra K. Sahoo, Alda Sanomiya, Richard Shok, Brian E. Smith, Greg G. Stewart:
Blue Gene/L programming and operating environment. IBM J. Res. Dev. 49(2-3): 367-376 (2005)
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