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2010 – 2019
- 2018
[c18]Sing-Hoi Sze, Craig D. Kaplan:
Codon-Based Sequence Alignment for Mutation Analysis by High-Throughput Sequencing. ICCABS 2018: 1- 2017
- [c17]Shuhua Fu, Peter L. Chang, Maren L. Friesen, Natasha L. Teakle, Aaron M. Tarone, Sing-Hoi Sze:
Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in melilotus. ICCABS 2017: 1 - 2016
- [c16]Sing-Hoi Sze, Jonathan J. Parrott, Aaron M. Tarone:
A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms. ICCABS 2016: 1 - 2015
- [j16]Jianer Chen, Jia-Hao Fan
, Sing-Hoi Sze:
Parameterized and approximation algorithms for maximum agreement forest in multifurcating trees. Theor. Comput. Sci. 562: 496-512 (2015) - 2014
- [j15]Mu-Fen Hsieh, Sing-Hoi Sze:
Finding Alignments of Conserved Graphlets in Protein Interaction Networks. J. Comput. Biol. 21(3): 234-246 (2014) - [c15]Shuhua Fu, Aaron M. Tarone, Sing-Hoi Sze:
Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data. ICCABS 2014: 1 - 2013
- [c14]Sing-Hoi Sze, Aaron M. Tarone:
A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-seq data. ICCABS 2013: 1 - [c13]Jianer Chen, Jia-Hao Fan, Sing-Hoi Sze:
Parameterized and Approximation Algorithms for the MAF Problem in Multifurcating Trees. WG 2013: 152-164 - 2012
- [j14]Gangman Yi, Michael R. Thon, Sing-Hoi Sze:
Supervised Protein Family Classification and New Family Construction. J. Comput. Biol. 19(8): 957-967 (2012) - [j13]Jia-Hao Fan, Jianer Chen, Sing-Hoi Sze:
Identifying Complexes from Protein Interaction Networks According to Different Types of Neighborhood Density. J. Comput. Biol. 19(12): 1284-1294 (2012) - [j12]Jianer Chen, Yang Liu, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang:
Iterative Expansion and Color Coding: An Improved Algorithm for 3D-Matching. ACM Trans. Algorithms 8(1): 6:1-6:22 (2012) - 2011
- [j11]Xiaoyan Zhao, Sing-Hoi Sze:
Motif Finding in DNA Sequences Based on Skipping Nonconserved Positions in Background Markov Chains. J. Comput. Biol. 18(5): 759-770 (2011) - 2010
- [j10]Qingwu Yang, Gangman Yi, Fenghui Zhang, Michael R. Thon, Sing-Hoi Sze:
Identifying Gene Clusters within Localized Regions in Multiple Genomes. J. Comput. Biol. 17(5): 657-668 (2010) - [c12]Mu-Fen Hsieh, Sing-Hoi Sze:
Graphlet alignment in protein interaction networks. GENSiPS 2010: 1-4
2000 – 2009
- 2009
- [j9]Xiaoning Qian, Sing-Hoi Sze, Byung-Jun Yoon:
Querying Pathways in Protein Interaction Networks Based on Hidden Markov Models. J. Comput. Biol. 16(2): 145-157 (2009) - 2008
- [j8]Qingwu Yang, Sing-Hoi Sze:
Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements. BMC Bioinform. 9 (2008) - [j7]Yue Lu, Sing-Hoi Sze:
Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. J. Comput. Biol. 15(7): 767-777 (2008) - 2007
- [j6]Songjian Lu, Fenghui Zhang, Jianer Chen, Sing-Hoi Sze:
Finding Pathway Structures in Protein Interaction Networks. Algorithmica 48(4): 363-374 (2007) - [j5]Gangman Yi, Sing-Hoi Sze, Michael R. Thon:
Identifying clusters of functionally related genes in genomes. Bioinform. 23(9): 1053-1060 (2007) - [j4]Qingwu Yang, Sing-Hoi Sze:
Path Matching and Graph Matching in Biological Networks. J. Comput. Biol. 14(1): 56-67 (2007) - [c11]Yue Lu, Sing-Hoi Sze:
Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. RECOMB 2007: 283-295 - [c10]Jianer Chen, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang:
Improved algorithms for path, matching, and packing problems. SODA 2007: 298-307 - 2006
- [j3]Sing-Hoi Sze, Yue Lu, Qingwu Yang:
A Polynomial Time Solvable Formulation of Multiple Sequence Alignment. J. Comput. Biol. 13(2): 309-319 (2006) - [c9]Yang Liu, Songjian Lu, Jianer Chen, Sing-Hoi Sze:
Greedy Localization and Color-Coding: Improved Matching and Packing Algorithms. IWPEC 2006: 84-95 - 2005
- [c8]Sing-Hoi Sze, Xiaoyan Zhao:
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences. Systems Biology and Regulatory Genomics 2005: 198-211 - [c7]Sing-Hoi Sze, Yue Lu, Qingwu Yang:
A Polynomial Time Solvable Formulation of Multiple Sequence Alignment. RECOMB 2005: 204-216 - 2004
- [c6]Sing-Hoi Sze, Songjian Lu, Jianer Chen:
Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding. WABI 2004: 438-449 - 2002
- [c5]Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner:
Splicing graphs and EST assembly problem. ISMB 2002: 181-188 - [c4]Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner:
Finding Weak Motifs in DNA Sequences. Pacific Symposium on Biocomputing 2002: 235-246 - 2000
- [c3]Pavel A. Pevzner, Sing-Hoi Sze:
Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. ISMB 2000: 269-278
1990 – 1999
- 1998
- [j2]Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner:
Algorithms and software for support of gene identification experiments. Bioinform. 14(1): 14-19 (1998) - 1997
- [j1]Sing-Hoi Sze, Pavel A. Pevzner:
Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment. J. Comput. Biol. 4(3): 297-309 (1997) - [c2]Guorong Xu, Sing-Hoi Sze, Cheng-Pin Liu, Pavel A. Pevzner, Norman Arnheim:
Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes. German Conference on Bioinformatics 1997: 17 - [c1]Sing-Hoi Sze, Pavel A. Pevzner:
Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. RECOMB 1997: 300-309
Coauthor Index
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